Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G2169 Papaver somniferum HOM05D003844 ORTHO05D004534 4.2e-116 421.4 217 100.0
PSO675G8298 Papaver somniferum HOM05D003844 ORTHO05D004534 4.7e-107 391.3 209 94.7
TAR628G0330 Trochodendron aralioides HOM05D003844 ORTHO05D004534 3.6e-67 258.8 220 63.6
Nn5g29521 Nelumbo nucifera HOM05D003844 ORTHO05D004534 8.9e-66 254.2 220 62.3
TAR376G1074 Trochodendron aralioides HOM05D003844 ORTHO05D004534 9.9e-65 250.8 220 61.8
Thecc.08G023100 Theobroma cacao HOM05D003844 ORTHO05D004534 6.6e-61 238.0 220 60.5
Manes.18G029300 Manihot esculenta HOM05D003844 ORTHO05D004534 1.1e-60 237.3 198 65.2
MBI16_g28231_MAGBIO Magnolia biondii HOM05D003844 ORTHO05D004534 4.3e-60 235.3 219 60.3
Dinv36050 Davidia involucrata HOM05D003844 ORTHO05D004534 1.2e-59 233.8 219 57.1
PSO700G0367 Papaver somniferum HOM05D003844 ORTHO05D004534 1.2e-59 233.8 214 58.9
COL.COLO4_26357 Corchorus olitorius HOM05D003844 ORTHO05D004534 1.6e-59 233.4 221 58.8
PSO170G0196 Papaver somniferum HOM05D003844 ORTHO05D004534 1.6e-59 233.4 214 58.9
Cfa018432 Carpinus fangiana HOM05D003844 ORTHO05D004534 2.8e-59 232.6 198 62.6
CSS0015572 Camellia sinensis var. sinensis HOM05D003844 ORTHO05D004534 3.6e-59 232.3 222 58.1
Potri.014G042200 Populus trichocarpa HOM05D003844 ORTHO05D004534 4.7e-59 231.9 195 64.1
Atru.chr13.530 Acer truncatum HOM05D003844 ORTHO05D004534 8.1e-59 231.1 220 59.5
Sabra14G0030700 Salix brachista HOM05D003844 ORTHO05D004534 8.1e-59 231.1 221 57.0
Peaxi162Scf00057g00625 Petunia axillaris HOM05D003844 ORTHO05D004534 1.1e-58 230.7 222 59.0
Hma1.2p1_0203F.1_g086610 Hydrangea macrophylla HOM05D003844 ORTHO05D004534 1.4e-58 230.3 219 61.6
Haze_17631 Corylus avellana HOM05D003844 ORTHO05D004534 1.8e-58 229.9 198 62.1
VMungo1309G3156 Vigna mungo HOM05D003844 ORTHO05D004534 2.4e-58 229.6 209 59.3
Duzib093G0973 Durio zibethinus HOM05D003844 ORTHO05D004534 4.0e-58 228.8 220 59.1
Duzib041G0703 Durio zibethinus HOM05D003844 ORTHO05D004534 6.9e-58 228.0 219 57.5
CSS0020057 Camellia sinensis var. sinensis HOM05D003844 ORTHO05D004534 8.9e-58 227.6 222 57.7
CANSAT25G0011 Cannabis sativa HOM05D003844 ORTHO05D004534 1.2e-57 227.3 223 58.3
FvH4_2g40130 Fragaria vesca HOM05D003844 ORTHO05D004534 1.5e-57 226.9 217 59.9
Phvul.009G056600 Phaseolus vulgaris HOM05D003844 ORTHO05D004534 2.0e-57 226.5 209 59.3
GSVIVG01009661001 Vitis vinifera HOM05D003844 ORTHO05D004534 2.0e-57 226.5 210 59.0
Lj1g0003038 Lotus japonicus HOM05D003844 ORTHO05D004534 2.6e-57 226.1 209 59.8
RcHm_v2.0_Chr6g0300601 Rosa chinensis HOM05D003844 ORTHO05D004534 3.4e-57 225.7 213 60.6
Glyma.04G033600 Glycine max HOM05D003844 ORTHO05D004534 5.8e-57 224.9 212 59.4
Ciclev10001396m.g Citrus clementina HOM05D003844 ORTHO05D004534 7.6e-57 224.6 226 56.2
Gohir.A06G011600 Gossypium hirsutum HOM05D003844 ORTHO05D004534 7.6e-57 224.6 219 56.2
Gorai.010G011800 Gossypium raimondii HOM05D003844 ORTHO05D004534 7.6e-57 224.6 219 56.6
Gohir.D06G009000 Gossypium hirsutum HOM05D003844 ORTHO05D004534 9.9e-57 224.2 219 56.6
Manes.05G162700 Manihot esculenta HOM05D003844 ORTHO05D004534 9.9e-57 224.2 225 57.3
Prupe.1G382400 Prunus persica HOM05D003844 ORTHO05D004534 9.9e-57 224.2 225 57.8
FAN15G3259 Fragaria x ananassa HOM05D003844 ORTHO05D004534 1.7e-56 223.4 218 59.6
TWI36G0861 Tripterygium wilfordii HOM05D003844 ORTHO05D004534 1.7e-56 223.4 224 57.6
FAN27G2061 Fragaria x ananassa HOM05D003844 ORTHO05D004534 4.9e-56 221.9 219 58.4
FAN20G0087 Fragaria x ananassa HOM05D003844 ORTHO05D004534 6.4e-56 221.5 218 59.2
Glyma.06G033800 Glycine max HOM05D003844 ORTHO05D004534 8.4e-56 221.1 209 58.9
Sc02g0006420 Simmondsia chinensis HOM05D003844 ORTHO05D004534 8.4e-56 221.1 227 55.5
MD08G1032300 Malus domestica HOM05D003844 ORTHO05D004534 1.1e-55 220.7 217 57.1
Nitab4.5_0000110g0330 Nicotiana tabacum HOM05D003844 ORTHO05D004534 1.9e-55 219.9 225 56.0
CAN.G1126.25 Capsicum annuum HOM05D003844 ORTHO05D004534 2.4e-55 219.5 227 55.1
MD15G1029000 Malus domestica HOM05D003844 ORTHO05D004534 2.4e-55 219.5 217 58.1
ATR0733G255 Amborella trichopoda HOM05D003844 ORTHO05D004534 3.2e-55 219.2 225 56.0
Potri.002G134100 Populus trichocarpa HOM05D003844 ORTHO05D004534 3.2e-55 219.2 215 57.7
TPR.G19519 Trifolium pratense HOM05D003844 ORTHO05D004534 3.2e-55 219.2 211 57.8
CDE07G1101 Ceratophyllum demersum HOM05D003844 ORTHO05D004534 4.2e-55 218.8 217 57.1
TWI56G1194 Tripterygium wilfordii HOM05D003844 ORTHO05D004534 5.4e-55 218.4 224 56.2
Nitab4.5_0003246g0140 Nicotiana tabacum HOM05D003844 ORTHO05D004534 7.1e-55 218.0 225 55.1
Cc10_g03240 Coffea canephora HOM05D003844 ORTHO05D004534 1.2e-54 217.2 229 52.0
MSTRG.22297 Avicennia marina HOM05D003844 ORTHO05D004534 1.6e-54 216.9 216 56.0
QL02p007730 Quercus lobata HOM05D003844 ORTHO05D004534 4.6e-54 215.3 220 54.5
Aqoxy6G01030 Aquilegia oxysepala HOM05D003844 ORTHO05D004534 6.0e-54 214.9 177 64.4
vmacro21621 Vaccinium macrocarpon HOM05D003844 ORTHO05D004534 6.0e-54 214.9 216 54.2
Lalb_Chr22g0355431 Lupinus albus HOM05D003844 ORTHO05D004534 1.3e-53 213.8 215 54.9
Eucgr.A00496 Eucalyptus grandis HOM05D003844 ORTHO05D004534 1.7e-53 213.4 213 55.9
HPP92_000098 Vanilla planifolia HOM05D003844 ORTHO05D004534 1.7e-53 213.4 193 58.5
CiPaw.16G054500 Carya illinoinensis HOM05D003844 ORTHO05D004534 2.3e-53 213.0 225 52.4
CsaV3_2G028530 Cucumis sativus L. HOM05D003844 ORTHO05D004534 2.3e-53 213.0 199 60.3
Medtr7g104580 Medicago truncatula HOM05D003844 ORTHO05D004534 3.9e-53 212.2 211 56.4
Lalb_Chr11g0062381 Lupinus albus HOM05D003844 ORTHO05D004534 5.1e-53 211.8 215 56.7
MSTRG.1291 Avicennia marina HOM05D003844 ORTHO05D004534 6.6e-53 211.5 218 54.1
Psat3g033360 Pisum sativum HOM05D003844 ORTHO05D004534 6.6e-53 211.5 218 57.3
PGSC0003DMG400027853 Solanum tuberosum HOM05D003844 ORTHO05D004534 6.6e-53 211.5 223 53.4
CiPaw.15G074100 Carya illinoinensis HOM05D003844 ORTHO05D004534 8.7e-53 211.1 226 54.0
PGR031G2782 Punica granatum HOM05D003844 ORTHO05D004534 8.7e-53 211.1 231 51.9
MELO3C010927.2 Cucumis melo HOM05D003844 ORTHO05D004534 1.1e-52 210.7 199 59.8
Sed0006776 Sechium edule HOM05D003844 ORTHO05D004534 1.5e-52 210.3 194 59.3
ClCG08G015280 Citrullus lanatus HOM05D003844 ORTHO05D004534 1.9e-52 209.9 197 58.9
QL01p055640 Quercus lobata HOM05D003844 ORTHO05D004534 2.5e-52 209.5 223 53.4
Sopen04g033610 Solanum pennellii HOM05D003844 ORTHO05D004534 2.5e-52 209.5 223 52.9
BcaB02g08710 Brassica carinata HOM05D003844 ORTHO05D004534 4.3e-52 208.8 212 54.7
Migut.C00695 Erythranthe guttata HOM05D003844 ORTHO05D004534 4.3e-52 208.8 222 54.1
arahy.Tifrunner.gnm1.ann1.HBE6U5 Arachis hypogaea HOM05D003844 ORTHO05D004534 5.6e-52 208.4 227 52.9
Lj4C43T11 Lonicera japonica HOM05D003844 ORTHO05D004534 7.3e-52 208.0 191 56.0
Oeu009862.2 Olea europaea HOM05D003844 ORTHO05D004534 9.6e-52 207.6 217 53.9
MSTRG.25150 Avicennia marina HOM05D003844 ORTHO05D004534 1.6e-51 206.8 218 54.1
Solyc04g080020.4 Solanum lycopersicum HOM05D003844 ORTHO05D004534 1.6e-51 206.8 223 52.0
Lalb_Chr23g0266661 Lupinus albus HOM05D003844 ORTHO05D004534 3.6e-51 205.7 217 55.8
arahy.Tifrunner.gnm1.ann1.N96YDH Arachis hypogaea HOM05D003844 ORTHO05D004534 4.8e-51 205.3 230 51.7
AUR62041676 Chenopodium quinoa HOM05D003844 ORTHO05D004534 1.1e-50 204.1 222 48.6
THA.LOC104808171 Tarenaya hassleriana HOM05D003844 ORTHO05D004534 1.1e-50 204.1 223 50.2
SalBow7G3794 Salvia bowleyana HOM05D003844 ORTHO05D004534 4.0e-50 202.2 212 54.7
SGA_v2.0_scaffold48G18062 Striga asiatica HOM05D003844 ORTHO05D004534 5.3e-50 201.8 216 51.4
BcaC08g47532 Brassica carinata HOM05D003844 ORTHO05D004534 6.9e-50 201.4 211 52.1
BolC6t40372H Brassica oleracea HOM05D003844 ORTHO05D004534 6.9e-50 201.4 211 52.1
BraA07t31982Z Brassica rapa HOM05D003844 ORTHO05D004534 6.9e-50 201.4 211 52.1
AUR62033852 Chenopodium quinoa HOM05D003844 ORTHO05D004534 6.9e-50 201.4 221 49.8
HanXRQChr02g0040241 Helianthus annuus HOM05D003844 ORTHO05D004534 6.9e-50 201.4 209 53.6
TPR.G15768 Trifolium pratense HOM05D003844 ORTHO05D004534 9.0e-50 201.1 210 54.8
Rhsim06G0035800 Rhododendron simsii HOM05D003844 ORTHO05D004534 1.5e-49 200.3 252 46.0
A07p44740 Brassica napus HOM05D003844 ORTHO05D004534 4.5e-49 198.7 211 51.7
Gorai.002G129600 Gossypium raimondii HOM05D003844 ORTHO05D004534 5.8e-49 198.4 219 51.6
Lj5g0022337 Lotus japonicus HOM05D003844 ORTHO05D004534 7.6e-49 198.0 212 53.3
Phvul.001G015600 Phaseolus vulgaris HOM05D003844 ORTHO05D004534 7.6e-49 198.0 223 52.0
Lsat_1_v5_gn_1_18240 Lactuca sativa HOM05D003844 ORTHO05D004534 9.9e-49 197.6 229 51.5
EL10Ac1g01762 Beta vulgaris HOM05D003844 ORTHO05D004534 1.3e-48 197.2 208 52.4
Medtr1g022005 Medicago truncatula HOM05D003844 ORTHO05D004534 1.3e-48 197.2 218 50.0
Lj4A783T77 Lonicera japonica HOM05D003844 ORTHO05D004534 1.7e-48 196.8 215 52.1
Ah.11g043250 Amaranthus hybridus HOM05D003844 ORTHO05D004534 3.8e-48 195.7 224 48.2
THA.LOC104813592 Tarenaya hassleriana HOM05D003844 ORTHO05D004534 4.9e-48 195.3 217 51.2
Thhalv10018678m.g Eutrema salsugineum HOM05D003844 ORTHO05D004534 6.4e-48 194.9 223 50.7
Gohir.A05G260100 Gossypium hirsutum HOM05D003844 ORTHO05D004534 6.4e-48 194.9 220 52.3
AT1G80950 Arabidopsis thaliana HOM05D003844 ORTHO05D004534 1.4e-47 193.7 226 50.0
Gohir.A01G117200 Gossypium hirsutum HOM05D003844 ORTHO05D004534 2.4e-47 193.0 219 50.2
C06p53560 Brassica napus HOM05D003844 ORTHO05D004534 3.2e-47 192.6 213 51.2
DCAR_020963 Daucus carota HOM05D003844 ORTHO05D004534 4.2e-47 192.2 209 50.2
HanXRQChr09g0268531 Helianthus annuus HOM05D003844 ORTHO05D004534 4.2e-47 192.2 224 49.1
AL2G40430 Arabidopsis lyrata HOM05D003844 ORTHO05D004534 7.1e-47 191.4 226 48.7
Carub.0002s2659 Capsella rubella HOM05D003844 ORTHO05D004534 7.1e-47 191.4 226 49.6
CARHR073500 Cardamine hirsuta HOM05D003844 ORTHO05D004534 1.2e-46 190.7 225 49.8
Hund26589 Selenicereus undatus HOM05D003844 ORTHO05D004534 1.2e-46 190.7 195 52.3
Gorai.009G273900 Gossypium raimondii HOM05D003844 ORTHO05D004534 1.6e-46 190.3 220 51.4
Sp5g34790 Schrenkiella parvula HOM05D003844 ORTHO05D004534 1.6e-46 190.3 227 49.3
Migut.N00512 Erythranthe guttata HOM05D003844 ORTHO05D004534 2.1e-46 189.9 192 55.7
Gohir.D05G262000 Gossypium hirsutum HOM05D003844 ORTHO05D004534 2.1e-46 189.9 220 50.9
Aa31LG4G1260 Aethionema arabicum HOM05D003844 ORTHO05D004534 1.3e-45 187.2 226 49.1
BcaNung04167 Brassica carinata HOM05D003844 ORTHO05D004534 3.9e-45 185.7 227 48.9
C06p29640 Brassica napus HOM05D003844 ORTHO05D004534 3.9e-45 185.7 227 48.9
SalBow8G1589 Salvia bowleyana HOM05D003844 ORTHO05D004534 5.1e-45 185.3 273 43.6
BolC6t38129H Brassica oleracea HOM05D003844 ORTHO05D004534 6.7e-45 184.9 228 48.2
ECA247G1868 Erigeron canadensis HOM05D003844 ORTHO05D004534 6.7e-45 184.9 188 52.7
Lsat_1_v5_gn_4_121720 Lactuca sativa HOM05D003844 ORTHO05D004534 1.1e-44 184.1 209 49.3
BcaB02g07236 Brassica carinata HOM05D003844 ORTHO05D004534 4.3e-44 182.2 230 48.3
DCAR_019512 Daucus carota HOM05D003844 ORTHO05D004534 4.3e-44 182.2 219 47.5
Eucgr.F01545 Eucalyptus grandis HOM05D003844 ORTHO05D004534 5.6e-44 181.8 168 56.0
BraA07t30341Z Brassica rapa HOM05D003844 ORTHO05D004534 1.6e-43 180.3 228 47.4
SGA_v2.0_scaffold374G50217 Striga asiatica HOM05D003844 ORTHO05D004534 2.1e-43 179.9 210 49.0
A07p26970 Brassica napus HOM05D003844 ORTHO05D004534 2.8e-43 179.5 228 47.4
ECA232G4877 Erigeron canadensis HOM05D003844 ORTHO05D004534 1.1e-42 177.6 175 52.6
Psat6g007040 Pisum sativum HOM05D003844 ORTHO05D004534 5.3e-42 175.3 212 51.4
SEGI_22020 Sequoiadendron giganteum HOM05D003844 ORTHO05D004534 9.0e-42 174.5 232 46.1
PGR083G2363 Punica granatum HOM05D003844 ORTHO05D004534 4.5e-41 172.2 169 51.5
Ca_13342_v3 Cicer arietinum L. HOM05D003844 ORTHO05D004534 2.9e-40 169.5 164 56.7
Gohir.D01G105300 Gossypium hirsutum HOM05D003844 ORTHO05D004534 3.8e-40 169.1 220 45.9
Actinidia15305 Actinidia chinensis HOM05D003844 ORTHO05D004534 8.4e-40 167.9 121 66.9
MD15G1028600 Malus domestica HOM05D003844 ORTHO05D004534 1.1e-39 167.5 168 54.8
SalBow8G5355 Salvia bowleyana HOM05D003844 ORTHO05D004534 3.5e-38 162.5 161 56.5
VMungo0647G2028 Vigna mungo HOM05D003844 ORTHO05D004534 1.4e-34 150.6 164 52.4
Mapoly0057s0031 Marchantia polymorpha HOM05D003844 ORTHO05D004534 4.0e-34 149.1 219 42.9
SMO116G0301 Selaginella moellendorffii HOM05D003844 ORTHO05D004534 2.6e-33 146.4 179 46.9
AagrBONN_evm.TU.Sc2ySwM_368.2423 Anthoceros agrestis HOM05D003844 ORTHO05D004534 1.7e-32 143.7 178 46.6
Pp3c11_25100 Physcomitrium patens HOM05D003844 ORTHO05D004534 2.2e-32 143.3 215 42.8
Pp3c11_25102 Physcomitrium patens HOM05D003844 ORTHO05D004534 2.2e-32 143.3 215 42.8
Zm00001eb130340 Zea mays HOM05D003844 ORTHO05D004534 1.1e-31 141.0 175 43.4
Os05g0357800 Oryza sativa ssp. japonica HOM05D003844 ORTHO05D004534 3.5e-30 136.0 189 42.9
PGR083G2093 Punica granatum HOM05D003844 ORTHO05D004534 6.9e-26 121.7 186 38.2
Dinv39393 Davidia involucrata HOM05D003844 ORTHO05D004534 2.6e-25 119.8 219 39.7
Ca_09005_v3 Cicer arietinum L. HOM05D003844 ORTHO05D004534 3.4e-25 119.4 209 40.7
HanXRQChr17g0553611 Helianthus annuus HOM05D003844 ORTHO05D004534 1.0e-24 117.9 102 56.9
CBR_g16994 Chara braunii HOM05D003844 ORTHO05D004534 2.4e-18 96.7 204 34.3
MBI16_g24678_MAGBIO Magnolia biondii HOM05D003844 ORTHO05D004534 2.0e-17 93.6 85 58.8
unitig_37.g12962 Utricularia gibba HOM05D003844 ORTHO05D004534 6.1e-14 82.0 82 51.2
unitig_37.g12961 Utricularia gibba HOM05D003844 ORTHO05D004534 1.8e-10 70.5 96 41.7
Zm00001eb347450 Zea mays HOM05D003844 ORTHO05D004534 6.9e-10 68.6 61 59.0
Actinidia22564 Actinidia chinensis HOM05D003844 ORTHO05D004534 9.1e-10 68.2 234 30.3
CDE06G1085 Ceratophyllum demersum HOM05D003844 ORTHO05D004534 1.0e-08 64.7 61 59.0
MBI16_g24677_MAGBIO Magnolia biondii HOM05D003844 ORTHO05D004534 7.9e-06 55.1 66 45.5


User provided reference genes

Program Settings