Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 3326.2 1720 100.0
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 3252.6 1721 98.0
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 2537.7 1731 76.1
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 0.0e+00 2475.7 1713 74.7
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 0.0e+00 2398.2 1735 72.6
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 0.0e+00 2375.9 1730 71.3
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 0.0e+00 2342.8 1729 70.2
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 0.0e+00 2338.1 1717 70.2
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2334.3 1731 69.8
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2327.7 1724 69.8
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2320.4 1720 69.7
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2317.3 1722 69.1
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2310.0 1730 68.8
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2308.1 1730 69.6
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 0.0e+00 2306.6 1727 68.8
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 0.0e+00 2305.4 1736 68.8
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 0.0e+00 2291.9 1713 68.8
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2289.6 1720 69.3
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2286.9 1725 68.5
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2279.6 1731 68.4
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2276.5 1728 68.9
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 0.0e+00 2256.1 1739 67.4
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 0.0e+00 2251.1 1730 67.5
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2246.1 1727 67.5
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 0.0e+00 2244.9 1736 68.4
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 0.0e+00 2243.8 1696 68.3
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 0.0e+00 2241.8 1727 67.6
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 0.0e+00 2239.5 1724 66.9
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 2238.0 1609 71.2
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 0.0e+00 2236.5 1725 67.6
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2235.7 1691 68.7
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2232.2 1730 67.1
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2229.9 1726 67.4
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 0.0e+00 2219.9 1741 67.4
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2215.7 1730 66.7
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 2215.7 1731 65.6
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2210.6 1728 66.7
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 2199.5 1735 65.1
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 0.0e+00 2197.9 1738 66.6
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2192.2 1729 65.5
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 2187.5 1721 65.4
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 0.0e+00 2187.1 1736 66.2
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 0.0e+00 2185.6 1721 66.1
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 0.0e+00 2182.9 1728 66.0
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 0.0e+00 2181.0 1729 66.5
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 0.0e+00 2176.0 1716 65.7
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 2165.2 1653 67.4
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 0.0e+00 2159.0 1725 65.5
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2152.1 1748 64.4
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 0.0e+00 2150.2 1699 66.0
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 0.0e+00 2142.9 1713 64.0
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 0.0e+00 2141.3 1709 66.2
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2129.8 1659 66.5
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 0.0e+00 2129.8 1784 63.2
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 0.0e+00 2124.0 1719 64.9
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 0.0e+00 2121.7 1782 63.7
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 0.0e+00 2115.9 1725 64.2
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 0.0e+00 2112.8 1727 63.3
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 0.0e+00 2110.1 1741 63.9
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 0.0e+00 2103.6 1741 63.6
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 0.0e+00 2102.8 1763 64.4
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 0.0e+00 2093.5 1721 63.7
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 2084.3 1742 62.9
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2083.1 1725 63.5
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2080.8 1791 62.4
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 0.0e+00 2075.8 1736 63.2
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2066.2 1736 62.4
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 0.0e+00 2065.8 1877 60.4
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 0.0e+00 2062.3 1736 62.3
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2058.5 1735 62.4
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 0.0e+00 2057.3 1744 61.9
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 0.0e+00 2051.6 1416 71.5
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 0.0e+00 2049.2 1743 62.5
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2038.8 1772 62.0
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 0.0e+00 2035.4 1736 61.5
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2027.3 1692 62.5
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2024.6 1705 61.7
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2020.7 1735 61.5
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 0.0e+00 1994.5 1717 61.6
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 0.0e+00 1993.8 2150 53.6
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 0.0e+00 1986.1 1660 62.8
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 0.0e+00 1947.2 1652 61.9
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 0.0e+00 1940.6 1705 60.3
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 0.0e+00 1931.0 1723 58.0
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1902.5 1294 70.7
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 0.0e+00 1902.1 1298 69.9
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 0.0e+00 1894.4 1646 61.2
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 0.0e+00 1885.2 1725 58.1
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 0.0e+00 1838.5 1812 57.0
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 0.0e+00 1810.0 1461 63.6
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 0.0e+00 1799.3 1162 74.5
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1724.5 1696 54.0
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1722.6 1744 54.1
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1714.9 1697 55.3
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1709.9 1737 53.7
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 0.0e+00 1681.0 1462 61.8
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 0.0e+00 1649.8 1716 52.4
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 0.0e+00 1610.5 1736 54.7
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1533.5 1047 71.2
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1502.6 1087 66.7
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 0.0e+00 1425.6 935 73.4
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1423.3 1387 57.3
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1376.7 1140 65.7
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 0.0e+00 1314.3 1103 64.2
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1266.9 1171 59.1
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1256.1 946 73.7
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1112.4 912 62.5
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 3.4e-277 959.5 745 64.7
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 3.3e-272 943.0 619 74.0
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 8.7e-265 918.3 799 65.3
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 2.2e-260 903.7 683 62.5
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 1.2e-242 844.7 603 69.0
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 3.0e-233 813.5 552 71.9
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 9.8e-216 755.4 1588 34.0
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 6.8e-209 732.6 853 42.2
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 2.4e-174 617.8 427 70.0
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 4.8e-154 550.4 378 71.7
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 5.9e-144 516.9 331 76.4
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 3.2e-142 511.1 573 57.2
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 2.0e-136 491.9 630 52.9
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 8.2e-122 443.4 889 33.0
HPP92_000970 Vanilla planifolia HOM05D004072 ORTHO05D005933 1.2e-115 422.9 550 54.0
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 2.0e-115 422.2 699 38.6
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 3.8e-103 381.3 241 75.9
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 1.5e-102 379.4 454 42.1
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 1.3e-98 366.3 366 56.0
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 4.5e-96 357.8 216 73.1
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 2.3e-92 345.5 247 64.4
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 3.3e-78 298.5 193 74.6
Glyma.09G084500 Glycine max HOM05D004072 ORTHO05D005933 3.3e-70 271.9 374 51.1
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 3.8e-66 258.5 181 63.5
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 5.6e-62 244.6 153 73.9
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 1.6e-61 243.0 175 65.1
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 3.3e-46 192.2 203 44.3
PGSC0003DMG400021174 Solanum tuberosum HOM05D004072 ORTHO05D005933 2.4e-44 186.0 117 79.5
VMungo1309G0832 Vigna mungo HOM05D004072 ORTHO05D005933 4.2e-41 175.3 448 38.6
QL05p053334 Quercus lobata HOM05D004072 ORTHO05D005933 3.5e-40 172.2 98 89.8
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 1.5e-38 166.8 129 58.1
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 4.2e-33 148.7 169 47.9
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 1.1e-30 140.6 131 50.4
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 7.4e-30 137.9 206 43.2
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 1.1e-28 134.0 125 53.6
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 3.1e-28 132.5 244 44.7
Cpa.g.sc17.84 Carica papaya HOM05D004072 ORTHO05D019491 2.5e-25 122.9 89 67.4
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 4.2e-25 122.1 88 67.0
Cc09_g08270 Coffea canephora HOM05D004072 ORTHO05D005933 4.6e-24 118.6 72 80.6
Hma1.2p1_1600F.1_g293130 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 7.9e-24 117.9 63 90.5
CSS0009414 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 5.1e-23 115.2 57 91.2
Cpa.g.sc17.80 Carica papaya HOM05D004072 ORTHO05D021063 5.1e-23 115.2 290 39.0
Medtr3g010273 Medicago truncatula HOM05D004072 ORTHO05D005933 4.3e-22 112.1 93 61.3
CSS0023750 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 1.7e-21 110.2 297 39.1
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 2.8e-21 109.4 111 48.6
Cc09_g08260 Coffea canephora HOM05D004072 ORTHO05D005933 6.9e-20 104.8 75 74.7
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 1.3e-18 100.5 214 34.6
RcHm_v2.0_Chr1g0313151 Rosa chinensis HOM05D004072 ORTHO05D005933 3.8e-18 99.0 57 86.0
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 5.5e-17 95.1 98 44.9
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 7.9e-16 91.3 84 53.6
Duzib248G0219 Durio zibethinus HOM05D004072 ORTHO05D019491 3.3e-14 85.9 94 52.1
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 7.4e-14 84.7 53 69.8
PGSC0003DMG400002279 Solanum tuberosum HOM05D004072 ORTHO05D005933 2.8e-13 82.8 50 82.0
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 2.4e-12 79.7 52 75.0
Actinidia36003 Actinidia chinensis HOM05D004072 ORTHO05D021063 5.9e-11 75.1 128 45.3
Actinidia36004 Actinidia chinensis HOM05D004072 ORTHO05D038051 5.9e-11 75.1 58 56.9
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 8.5e-10 71.2 43 69.8
SalBow5G4417 Salvia bowleyana HOM05D004072 ORTHO05D007163 1.4e-09 70.5 95 38.9
Duzib248G0875 Durio zibethinus HOM05D000121 ORTHO05D000102 1.6e-08 67.0 106 43.4
SEGI_36323 Sequoiadendron giganteum HOM05D004072 ORTHO05D385563 2.7e-08 66.2 54 57.4
Lsat_1_v5_gn_6_117121 Lactuca sativa HOM05D004072 ORTHO05D001686 3.6e-08 65.9 40 72.5
Lsat_1_v5_gn_6_30620 Lactuca sativa HOM05D000062 ORTHO05D013119 3.6e-08 65.9 165 30.3
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 3.6e-08 65.9 68 50.0
Lsat_1_v5_gn_5_73260 Lactuca sativa HOM05D000371 ORTHO05D006177 1.8e-07 63.5 42 64.3
Lsat_1_v5_gn_9_121081 Lactuca sativa HOM05D004072 ORTHO05D001686 3.0e-07 62.8 35 77.1
Rhsim12G0022600 Rhododendron simsii HOM05D004072 ORTHO05D005933 2.6e-06 59.7 49 67.3


User provided reference genes

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