Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G1902 Papaver somniferum HOM05D003730 ORTHO05D004458 4.2e-119 431.4 223 100.0
PSO541G3402 Papaver somniferum HOM05D003730 ORTHO05D004458 1.3e-72 276.9 141 98.6
PSO339G0047 Papaver somniferum HOM05D003730 ORTHO05D004458 3.6e-62 242.3 141 83.0
PSO063G2117 Papaver somniferum HOM05D003730 ORTHO05D004458 8.0e-62 241.1 136 85.3
PSO339G5717 Papaver somniferum HOM05D003730 ORTHO05D004458 7.3e-47 191.4 142 68.3
PSO063G2886 Papaver somniferum HOM05D003730 ORTHO05D004458 2.1e-46 189.9 142 68.3
Aqoxy2G02240 Aquilegia oxysepala HOM05D003730 ORTHO05D004458 1.5e-36 157.1 138 55.1
BcaC02g07503 Brassica carinata HOM05D003730 ORTHO05D004458 2.0e-36 156.8 140 55.0
C04p66100 Brassica napus HOM05D003730 ORTHO05D004458 2.0e-36 156.8 140 55.0
Os03g0822200 Oryza sativa ssp. japonica HOM05D003730 ORTHO05D004458 2.6e-36 156.4 142 55.6
Sp4g20020 Schrenkiella parvula HOM05D003730 ORTHO05D004458 2.6e-36 156.4 140 54.3
A04p28820 Brassica napus HOM05D003730 ORTHO05D004458 4.4e-36 155.6 140 54.3
BraA04t18359Z Brassica rapa HOM05D003730 ORTHO05D004458 4.4e-36 155.6 140 54.3
BcaB06g29015 Brassica carinata HOM05D003730 ORTHO05D004458 5.8e-36 155.2 140 54.3
BcaB06g29016 Brassica carinata HOM05D003730 ORTHO05D004458 5.8e-36 155.2 140 54.3
A05p08310 Brassica napus HOM05D003730 ORTHO05D004458 9.9e-36 154.5 140 52.9
BraA05t19796Z Brassica rapa HOM05D003730 ORTHO05D004458 9.9e-36 154.5 140 52.9
Ca_27652_v3 Cicer arietinum L. HOM05D003730 ORTHO05D004458 9.9e-36 154.5 141 53.2
Medtr7g062140 Medicago truncatula HOM05D003730 ORTHO05D004458 2.2e-35 153.3 141 56.7
ClCG04G008110 Citrullus lanatus HOM05D003730 ORTHO05D004458 2.9e-35 152.9 141 56.0
Thhalv10016917m.g Eutrema salsugineum HOM05D003730 ORTHO05D004458 2.9e-35 152.9 140 52.1
Psat7g235680 Pisum sativum HOM05D003730 ORTHO05D004458 2.9e-35 152.9 141 54.6
BcaB02g09264 Brassica carinata HOM05D003730 ORTHO05D004458 3.8e-35 152.5 140 52.1
Nn2g13382 Nelumbo nucifera HOM05D003730 ORTHO05D004458 3.8e-35 152.5 133 55.6
ECA248G3650 Erigeron canadensis HOM05D003730 ORTHO05D004458 4.9e-35 152.1 141 53.9
Gohir.A09G155032 Gossypium hirsutum HOM05D003730 ORTHO05D004458 4.9e-35 152.1 132 58.3
AL4G34250 Arabidopsis lyrata HOM05D003730 ORTHO05D004458 6.4e-35 151.8 140 51.4
CSS0040011 Camellia sinensis var. sinensis HOM05D003730 ORTHO05D004458 6.4e-35 151.8 133 56.4
Carub.0004s1959 Capsella rubella HOM05D003730 ORTHO05D004458 6.4e-35 151.8 140 51.4
MBI14_g12122_MAGBIO Magnolia biondii HOM05D003730 ORTHO05D004458 6.4e-35 151.8 133 56.4
Ciclev10012166m.g Citrus clementina HOM05D003730 ORTHO05D004458 8.4e-35 151.4 138 54.3
Gohir.D09G150600 Gossypium hirsutum HOM05D003730 ORTHO05D004458 8.4e-35 151.4 132 57.6
Lalb_Chr03g0042331 Lupinus albus HOM05D003730 ORTHO05D004458 8.4e-35 151.4 141 54.6
RcHm_v2.0_Chr3g0466371 Rosa chinensis HOM05D003730 ORTHO05D004458 8.4e-35 151.4 141 53.9
HPP92_018136 Vanilla planifolia HOM05D003730 ORTHO05D004458 8.4e-35 151.4 134 56.0
Aa31LG5G23160 Aethionema arabicum HOM05D003730 ORTHO05D004458 1.1e-34 151.0 140 51.4
MELO3C003137.2 Cucumis melo HOM05D003730 ORTHO05D004458 1.1e-34 151.0 133 57.1
Dinv35586 Davidia involucrata HOM05D003730 ORTHO05D004458 1.1e-34 151.0 141 53.2
Hma1.2p1_1889F.1_g306630 Hydrangea macrophylla HOM05D003730 ORTHO05D004458 1.1e-34 151.0 141 53.9
CsaV3_4G025080 Cucumis sativus L. HOM05D003730 ORTHO05D004458 1.4e-34 150.6 133 57.1
MD04G1130500 Malus domestica HOM05D003730 ORTHO05D004458 1.4e-34 150.6 141 53.9
MD12G1143700 Malus domestica HOM05D003730 ORTHO05D004458 1.4e-34 150.6 141 54.6
THA.LOC104816264 Tarenaya hassleriana HOM05D003730 ORTHO05D004458 1.4e-34 150.6 133 55.6
TPR.G1677 Trifolium pratense HOM05D003730 ORTHO05D004458 1.4e-34 150.6 141 56.7
MSTRG.5656 Avicennia marina HOM05D003730 ORTHO05D004458 1.9e-34 150.2 135 53.3
Sed0018240 Sechium edule HOM05D003730 ORTHO05D004458 1.9e-34 150.2 133 56.4
Atru.chr8.1989 Acer truncatum HOM05D003730 ORTHO05D004458 2.4e-34 149.8 135 54.1
BolC4t28114H Brassica oleracea HOM05D003730 ORTHO05D004458 2.4e-34 149.8 147 51.7
FvH4_6g13500 Fragaria vesca HOM05D003730 ORTHO05D004458 2.4e-34 149.8 141 53.9
FAN05G3435 Fragaria x ananassa HOM05D003730 ORTHO05D004458 2.4e-34 149.8 141 53.9
FAN09G4346 Fragaria x ananassa HOM05D003730 ORTHO05D004458 2.4e-34 149.8 141 53.9
FAN14G3205 Fragaria x ananassa HOM05D003730 ORTHO05D004458 2.4e-34 149.8 141 53.9
FAN14G3787 Fragaria x ananassa HOM05D003730 ORTHO05D004458 2.4e-34 149.8 141 53.9
Gorai.006G171900 Gossypium raimondii HOM05D003730 ORTHO05D004458 2.4e-34 149.8 132 56.8
Hma1.2p1_0936F.1_g238830 Hydrangea macrophylla HOM05D003730 ORTHO05D004458 2.4e-34 149.8 141 53.2
TAR623G1158 Trochodendron aralioides HOM05D003730 ORTHO05D004458 2.4e-34 149.8 133 55.6
Zm00001eb355850 Zea mays HOM05D003730 ORTHO05D004458 2.4e-34 149.8 133 56.4
A10p33380 Brassica napus HOM05D003730 ORTHO05D004458 3.2e-34 149.4 133 54.1
C09p74290 Brassica napus HOM05D003730 ORTHO05D004458 3.2e-34 149.4 133 54.9
BolC9t60162H Brassica oleracea HOM05D003730 ORTHO05D004458 3.2e-34 149.4 133 54.9
CARHR211130 Cardamine hirsuta HOM05D003730 ORTHO05D004458 3.2e-34 149.4 132 56.1
FAN02G4300 Fragaria x ananassa HOM05D003730 ORTHO05D004458 3.2e-34 149.4 133 55.6
SalBow4G0960 Salvia bowleyana HOM05D003730 ORTHO05D004458 3.2e-34 149.4 138 55.1
Sc20g0005000 Simmondsia chinensis HOM05D003730 ORTHO05D004458 3.2e-34 149.4 135 56.3
CARHR131920 Cardamine hirsuta HOM05D003730 ORTHO05D004458 4.2e-34 149.1 133 54.1
Manes.09G092700 Manihot esculenta HOM05D003730 ORTHO05D004458 4.2e-34 149.1 141 53.2
Medtr4g021815 Medicago truncatula HOM05D003730 ORTHO05D004458 4.2e-34 149.1 141 53.9
BraA10t45369Z Brassica rapa HOM05D003730 ORTHO05D004458 5.4e-34 148.7 133 54.1
Carub.0006s0108 Capsella rubella HOM05D003730 ORTHO05D004458 5.4e-34 148.7 132 56.1
COL.COLO4_14783 Corchorus olitorius HOM05D003730 ORTHO05D004458 5.4e-34 148.7 132 55.3
HanXRQChr01g0003071 Helianthus annuus HOM05D003730 ORTHO05D004458 5.4e-34 148.7 141 52.5
TAR636G1862 Trochodendron aralioides HOM05D003730 ORTHO05D004458 5.4e-34 148.7 133 54.9
QL07p048679 Quercus lobata HOM05D003730 ORTHO05D004458 7.1e-34 148.3 133 54.9
GSVIVG01034152001 Vitis vinifera HOM05D003730 ORTHO05D004458 7.1e-34 148.3 133 54.9
Actinidia13152 Actinidia chinensis HOM05D003730 ORTHO05D004458 9.3e-34 147.9 140 52.9
DCAR_024060 Daucus carota HOM05D003730 ORTHO05D004458 9.3e-34 147.9 133 55.6
Mapoly0187s0017 Marchantia polymorpha HOM05D003730 ORTHO05D004458 9.3e-34 147.9 140 55.0
Thecc.05G037600 Theobroma cacao HOM05D003730 ORTHO05D004458 9.3e-34 147.9 132 54.5
AT2G37660 Arabidopsis thaliana HOM05D003730 ORTHO05D004458 1.2e-33 147.5 140 50.0
Ca_07559_v3 Cicer arietinum L. HOM05D003730 ORTHO05D004458 1.2e-33 147.5 141 53.2
Duzib093G1851 Durio zibethinus HOM05D003730 ORTHO05D004458 1.2e-33 147.5 132 56.1
Potri.006G086800 Populus trichocarpa HOM05D003730 ORTHO05D004458 1.2e-33 147.5 132 54.5
CDE08G1340 Ceratophyllum demersum HOM05D000714 ORTHO05D000544 1.6e-33 147.1 141 51.8
Duzib128G1894 Durio zibethinus HOM05D003730 ORTHO05D004458 1.6e-33 147.1 132 56.1
Thhalv10014474m.g Eutrema salsugineum HOM05D003730 ORTHO05D004458 1.6e-33 147.1 132 54.5
Os05g0110300 Oryza sativa ssp. japonica HOM05D003730 ORTHO05D004458 2.1e-33 146.7 133 54.9
Psat3g138600 Pisum sativum HOM05D003730 ORTHO05D004458 2.1e-33 146.7 141 53.2
Sopen09g005650 Solanum pennellii HOM05D003730 ORTHO05D004458 2.1e-33 146.7 141 53.2
CiPaw.09G194500 Carya illinoinensis HOM05D003730 ORTHO05D004458 2.7e-33 146.4 133 53.4
CDE04G1817 Ceratophyllum demersum HOM05D003730 ORTHO05D004458 2.7e-33 146.4 142 50.0
PGSC0003DMG400008830 Solanum tuberosum HOM05D003730 ORTHO05D004458 2.7e-33 146.4 141 53.2
TWI74G0344 Tripterygium wilfordii HOM05D003730 ORTHO05D004458 2.7e-33 146.4 133 53.4
Oeu010095.1 Olea europaea HOM05D003730 ORTHO05D004458 3.5e-33 146.0 141 53.2
Peaxi162Scf00165g00819 Petunia axillaris HOM05D003730 ORTHO05D004458 3.5e-33 146.0 141 52.5
TWI77G0750 Tripterygium wilfordii HOM05D003730 ORTHO05D004458 3.5e-33 146.0 133 53.4
AT5G02240 Arabidopsis thaliana HOM05D003730 ORTHO05D004458 4.6e-33 145.6 132 55.3
DCAR_012103 Daucus carota HOM05D003730 ORTHO05D004458 4.6e-33 145.6 131 53.4
Glyma.18G182600 Glycine max HOM05D003730 ORTHO05D004458 4.6e-33 145.6 141 52.5
Sp6g40210 Schrenkiella parvula HOM05D003730 ORTHO05D004458 4.6e-33 145.6 132 53.8
VMungo1383G3507 Vigna mungo HOM05D003730 ORTHO05D004458 4.6e-33 145.6 140 54.3
Actinidia26475 Actinidia chinensis HOM05D003730 ORTHO05D004458 6.0e-33 145.2 142 51.4
Haze_20813 Corylus avellana HOM05D003730 ORTHO05D004458 6.0e-33 145.2 136 51.5
Sabra06G0066200 Salix brachista HOM05D003730 ORTHO05D004458 6.0e-33 145.2 132 53.8
SEGI_20216 Sequoiadendron giganteum HOM05D003730 ORTHO05D004458 6.0e-33 145.2 138 51.4
Solyc09g010930.4 Solanum lycopersicum HOM05D003730 ORTHO05D004458 6.0e-33 145.2 141 53.2
arahy.Tifrunner.gnm1.ann1.E6NKCB Arachis hypogaea HOM05D003730 ORTHO05D004458 7.8e-33 144.8 138 51.4
AUR62041751 Chenopodium quinoa HOM05D003730 ORTHO05D004458 7.8e-33 144.8 141 53.2
Glyma.07G133200 Glycine max HOM05D003730 ORTHO05D004458 7.8e-33 144.8 141 52.5
Lsat_1_v5_gn_5_149640 Lactuca sativa HOM05D003730 ORTHO05D004458 7.8e-33 144.8 141 51.8
Phvul.008G119600 Phaseolus vulgaris HOM05D003730 ORTHO05D004458 7.8e-33 144.8 141 53.2
ATR0559G007 Amborella trichopoda HOM05D003730 ORTHO05D004458 1.0e-32 144.4 132 54.5
arahy.Tifrunner.gnm1.ann1.L41CIL Arachis hypogaea HOM05D003730 ORTHO05D004458 1.0e-32 144.4 137 51.8
VMungo0331G0374 Vigna mungo HOM05D003730 ORTHO05D004458 1.0e-32 144.4 134 51.5
CAN.G1685.1 Capsicum annuum HOM05D003730 ORTHO05D004458 1.3e-32 144.1 133 54.1
Phvul.010G011300 Phaseolus vulgaris HOM05D003730 ORTHO05D004458 1.3e-32 144.1 141 51.1
PGR004G0886 Punica granatum HOM05D003730 ORTHO05D004458 1.3e-32 144.1 133 54.9
PGR031G0852 Punica granatum HOM05D003730 ORTHO05D004458 1.3e-32 144.1 133 52.6
CiPaw.10G146400 Carya illinoinensis HOM05D003730 ORTHO05D004458 1.7e-32 143.7 133 53.4
Lj1g0003421 Lotus japonicus HOM05D003730 ORTHO05D004458 1.7e-32 143.7 141 51.8
Lalb_Chr12g0209561 Lupinus albus HOM05D003730 ORTHO05D004458 1.7e-32 143.7 134 53.7
Zm00001eb062770 Zea mays HOM05D003730 ORTHO05D004458 1.7e-32 143.7 142 50.7
Migut.J00321 Erythranthe guttata HOM05D003730 ORTHO05D004458 2.3e-32 143.3 135 52.6
THA.LOC104823415 Tarenaya hassleriana HOM05D003730 ORTHO05D004458 2.3e-32 143.3 131 53.4
arahy.Tifrunner.gnm1.ann1.CCZS04 Arachis hypogaea HOM05D003730 ORTHO05D004458 3.0e-32 142.9 141 51.1
arahy.Tifrunner.gnm1.ann1.D1PGNE Arachis hypogaea HOM05D003730 ORTHO05D004458 3.0e-32 142.9 141 51.1
Eucgr.A01273 Eucalyptus grandis HOM05D003730 ORTHO05D004458 3.0e-32 142.9 133 52.6
Prupe.6G257200 Prunus persica HOM05D003730 ORTHO05D004458 3.0e-32 142.9 141 52.5
Aa31LG1G22500 Aethionema arabicum HOM05D005507 ORTHO05D007316 3.9e-32 142.5 133 53.4
PSO339G5845 Papaver somniferum HOM05D003730 ORTHO05D004458 1.5e-31 140.6 133 52.6
AL6G11480 Arabidopsis lyrata HOM05D003730 ORTHO05D004458 1.9e-31 140.2 132 53.0
Hund10632 Selenicereus undatus HOM05D003730 ORTHO05D004458 1.9e-31 140.2 141 51.8
Lj3g0005938 Lotus japonicus HOM05D003730 ORTHO05D004458 2.5e-31 139.8 133 53.4
Manes.08G088900 Manihot esculenta HOM05D003730 ORTHO05D004458 3.3e-31 139.4 140 51.4
PSO513G0074 Papaver somniferum HOM05D003730 ORTHO05D004458 3.3e-31 139.4 133 51.9
Cfa017360 Carpinus fangiana HOM05D003730 ORTHO05D004458 5.6e-31 138.7 136 50.0
Dinv37162 Davidia involucrata HOM05D003730 ORTHO05D004458 2.1e-30 136.7 122 54.1
Rhsim05G0193900 Rhododendron simsii HOM05D003730 ORTHO05D004458 2.1e-30 136.7 133 49.6
SMO141G0146 Selaginella moellendorffii HOM05D003730 ORTHO05D004458 2.1e-30 136.7 134 52.2
Pp3c14_3760 Physcomitrium patens HOM05D003730 ORTHO05D004458 2.8e-30 136.3 139 54.0
unitig_8.g4054 Utricularia gibba HOM05D003730 ORTHO05D004458 3.6e-30 136.0 136 50.7
TPR.G5554 Trifolium pratense HOM05D003730 ORTHO05D004458 4.8e-30 135.6 124 50.8
MSTRG.5810 Avicennia marina HOM05D003730 ORTHO05D004458 6.2e-30 135.2 142 48.6
CANSAT54G2707 Cannabis sativa HOM05D003730 ORTHO05D004458 1.8e-29 133.7 132 51.5
BcaB02g09265 Brassica carinata HOM05D003730 ORTHO05D004458 9.0e-29 131.3 121 51.2
Pp3c15_16990 Physcomitrium patens HOM05D003730 ORTHO05D004458 2.6e-28 129.8 132 53.8
AUR62041348 Chenopodium quinoa HOM05D003730 ORTHO05D004458 3.4e-28 129.4 122 53.3
AagrBONN_evm.TU.Sc2ySwM_117.3727 Anthoceros agrestis HOM05D003730 ORTHO05D004458 1.3e-27 127.5 132 51.5
Pp3c9_11060 Physcomitrium patens HOM05D003730 ORTHO05D004458 1.3e-27 127.5 133 53.4
SMO118G0186 Selaginella moellendorffii HOM05D003730 ORTHO05D004458 1.7e-27 127.1 135 48.1
vmacro08647 Vaccinium macrocarpon HOM05D003730 ORTHO05D004458 3.8e-27 125.9 121 50.4
Nitab4.5_0004639g0020 Nicotiana tabacum HOM05D003730 ORTHO05D004458 6.4e-27 125.2 127 50.4
Oeu036136.3 Olea europaea HOM05D003730 ORTHO05D004458 8.4e-27 124.8 122 47.5
SGA_v2.0_scaffold75G24956 Striga asiatica HOM05D000181 ORTHO05D003134 3.5e-25 119.4 121 47.9
vmacro20165 Vaccinium macrocarpon HOM05D003730 ORTHO05D004458 6.0e-25 118.6 117 47.9
Aqoxy3G01130 Aquilegia oxysepala HOM05D003730 ORTHO05D004458 1.5e-23 114.0 109 50.5
Lj2A93T84 Lonicera japonica HOM05D003730 ORTHO05D004458 7.4e-23 111.7 141 46.1
CBR_g8964 Chara braunii HOM05D003730 ORTHO05D004458 6.2e-22 108.6 140 41.4
Cc06_g02520 Coffea canephora HOM05D003730 ORTHO05D004458 3.4e-20 102.8 141 41.8
Lj3A966G51 Lonicera japonica HOM05D003730 ORTHO05D004458 1.9e-18 97.1 97 47.4
BcaC02g11887 Brassica carinata HOM05D003730 ORTHO05D004458 2.1e-17 93.6 115 41.7
Cre06.g279850 Chlamydomonas reinhardtii HOM05D003730 ORTHO05D004458 6.7e-16 88.6 140 39.3
MCO14G206 Micromonas commoda HOM05D003730 ORTHO05D004458 1.4e-13 80.9 147 39.5
VMungo1383G0388 Vigna mungo HOM05D003730 ORTHO05D004458 2.3e-08 63.5 95 38.9
Actinidia11261 Actinidia chinensis HOM05D003730 ORTHO05D004458 5.1e-08 62.4 67 38.8
PRCOL_00003288 Prasinoderma coloniale HOM05D003730 ORTHO05D004458 3.7e-06 56.2 149 33.6
C04p10280 Brassica napus HOM05D003730 ORTHO05D004458 4.8e-06 55.8 56 48.2
BolC4t22626H Brassica oleracea HOM05D003730 ORTHO05D004458 4.8e-06 55.8 56 48.2


User provided reference genes

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