Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 0.0e+00 1085.5 553 100.0
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 1.8e-296 1021.9 553 95.3
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 1.3e-230 803.1 538 74.2
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 2.2e-230 802.4 531 74.8
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 3.8e-230 801.6 524 75.2
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 6.5e-230 800.8 530 74.9
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 8.5e-230 800.4 533 75.0
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.5e-229 799.7 524 74.8
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 2.5e-229 798.9 524 74.2
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 1.2e-226 790.0 521 73.9
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 1.5e-226 789.6 533 73.2
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 2.6e-226 788.9 529 74.9
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 1.3e-225 786.6 532 73.3
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 6.3e-225 784.3 529 73.0
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 2.4e-224 782.3 525 72.8
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 2.7e-223 778.9 536 72.0
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 1.0e-222 776.9 532 71.6
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 1.3e-222 776.5 530 71.7
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 2.2e-222 775.8 530 73.2
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 2.2e-222 775.8 523 74.2
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 3.8e-222 775.0 528 72.3
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 1.9e-221 772.7 527 72.7
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 1.2e-220 770.0 524 72.3
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 1.2e-220 770.0 536 71.1
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 1.6e-220 769.6 523 73.0
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 3.6e-220 768.5 536 70.9
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 8.0e-220 767.3 525 73.1
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 1.8e-219 766.1 523 71.9
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 2.3e-219 765.8 543 70.7
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 4.0e-219 765.0 543 70.5
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 4.0e-219 765.0 528 71.0
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 4.0e-219 765.0 527 72.7
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 4.4e-218 761.5 528 72.0
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 1.7e-217 759.6 539 70.9
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 6.3e-217 757.7 524 70.6
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 3.1e-216 755.4 512 73.4
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 1.2e-215 753.4 538 70.8
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 5.9e-215 751.1 520 71.2
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 1.3e-214 750.0 518 72.4
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 2.3e-214 749.2 538 70.3
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 3.8e-214 748.4 514 72.0
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 1.5e-213 746.5 523 73.4
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 5.5e-213 744.6 533 70.9
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 1.2e-212 743.4 527 70.8
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 1.6e-212 743.0 537 70.4
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 1.6e-212 743.0 537 70.4
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 1.6e-212 743.0 537 70.4
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 2.1e-212 742.7 508 73.6
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 1.4e-211 740.0 530 70.2
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 1.8e-211 739.6 469 77.8
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 2.3e-211 739.2 537 70.2
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 3.0e-211 738.8 537 69.8
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 4.0e-211 738.4 536 69.2
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 8.9e-211 737.3 531 70.1
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 1.2e-210 736.9 522 69.5
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 2.6e-210 735.7 532 70.1
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 4.4e-210 734.9 518 71.0
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 4.4e-210 734.9 541 69.1
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 5.7e-210 734.6 520 71.0
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 1.3e-209 733.4 531 69.5
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 6.3e-209 731.1 541 68.6
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 8.3e-209 730.7 527 69.6
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 8.3e-209 730.7 523 68.1
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 1.1e-208 730.3 541 68.6
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 1.1e-208 730.3 541 68.6
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 1.1e-208 730.3 528 69.3
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 3.2e-208 728.8 523 68.5
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 3.2e-208 728.8 523 68.6
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 1.2e-207 726.9 527 69.3
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 1.2e-207 726.9 538 69.0
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 2.7e-207 725.7 480 74.8
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 4.5e-207 724.9 530 68.5
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 5.9e-207 724.5 516 69.4
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 7.8e-207 724.2 459 76.5
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 1.7e-206 723.0 483 73.5
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 2.9e-206 722.2 532 67.7
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 3.9e-206 721.8 532 68.0
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 5.0e-206 721.5 532 67.9
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 1.1e-205 720.3 517 70.0
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 2.5e-205 719.2 532 67.9
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 2.1e-204 716.1 479 74.5
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 3.6e-204 715.3 529 67.9
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.0e-203 713.8 527 67.6
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 2.9e-201 705.7 506 70.8
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 6.4e-201 704.5 518 68.3
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.4e-200 703.4 529 66.7
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 3.2e-200 702.2 510 68.8
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 8.6e-198 694.1 526 63.7
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 2.5e-197 692.6 522 64.4
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 3.3e-197 692.2 525 67.6
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 4.3e-197 691.8 524 63.9
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 9.5e-197 690.6 529 62.8
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 8.0e-196 687.6 521 65.3
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 1.4e-195 686.8 537 64.4
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 1.8e-195 686.4 517 64.2
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 3.1e-195 685.6 541 64.3
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 5.2e-195 684.9 516 63.2
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 5.2e-195 684.9 517 63.2
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 1.2e-194 683.7 527 65.7
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 1.5e-194 683.3 533 64.5
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 2.0e-194 682.9 521 64.9
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 4.4e-194 681.8 520 64.2
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 9.8e-194 680.6 520 64.0
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 9.8e-194 680.6 547 64.7
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 1.9e-192 676.4 432 76.4
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 5.6e-189 664.8 532 60.7
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 4.0e-187 658.7 454 72.5
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 1.4e-184 650.2 460 67.8
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 3.9e-182 642.1 520 60.2
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 1.5e-181 640.2 469 66.3
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 2.6e-178 629.4 428 71.0
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 3.4e-178 629.0 387 80.6
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 1.6e-175 620.2 514 60.1
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 3.5e-175 619.0 530 58.1
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 1.1e-173 614.0 496 59.9
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 7.9e-167 591.3 404 72.0
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 4.3e-165 585.5 544 55.5
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 2.8e-164 582.8 383 74.7
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 1.0e-158 564.3 460 59.6
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 3.9e-158 562.4 519 55.9
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 4.8e-148 528.9 391 66.2
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 5.8e-146 521.9 385 66.5
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 1.3e-142 510.8 361 70.4
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 5.0e-137 492.3 324 74.1
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 1.0e-134 484.6 474 50.8
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 2.0e-130 470.3 325 70.5
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 2.9e-129 466.5 523 47.0
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 1.2e-127 461.1 357 65.3
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 6.3e-124 448.7 455 49.0
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 1.2e-119 434.5 555 42.0
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 4.7e-111 406.0 550 39.6
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 3.1e-99 366.7 227 78.9
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 6.6e-89 332.4 249 68.3
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 5.8e-69 266.2 194 67.5
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.3e-68 265.0 201 68.7
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 3.8e-60 236.9 180 64.4
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 1.9e-59 234.6 161 70.8
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 4.0e-54 216.9 173 60.7
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 7.1e-51 206.1 138 68.8
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 2.5e-48 197.6 154 63.0
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 1.2e-45 188.7 139 67.6
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 2.9e-44 184.1 159 57.2
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 2.6e-37 161.0 149 53.0
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 8.2e-31 139.4 97 70.1
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 1.0e-28 132.5 149 50.3
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 1.7e-28 131.7 116 57.8
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 5.7e-24 116.7 489 23.9
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 1.1e-22 112.5 74 68.9
Cre06.g251650 Chlamydomonas reinhardtii HOM05D004898 ORTHO05D005574 1.0e-20 105.9 470 23.4
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 2.1e-18 98.2 71 63.4
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 5.3e-14 83.6 67 58.2
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 5.3e-14 83.6 67 58.2
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 4.4e-08 63.9 45 66.7
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 5.7e-08 63.5 46 65.2
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 1.7e-07 62.0 53 62.3
VMungo1383G2427 Vigna mungo HOM05D035140 ORTHO05D005574 1.4e-06 58.9 46 58.7
MCO11G294 Micromonas commoda HOM05D011351 ORTHO05D013707 2.4e-06 58.2 100 36.0


User provided reference genes

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