Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G1551 Papaver somniferum HOM05D004949 ORTHO05D009901 3.0e-81 305.1 150 100.0
PSO782G0801 Papaver somniferum HOM05D000211 ORTHO05D009901 2.5e-22 109.4 75 74.7
PSO357G0630 Papaver somniferum HOM05D000211 ORTHO05D009901 9.3e-22 107.5 75 74.7
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 4.6e-21 105.1 56 92.9
PSO832G1131 Papaver somniferum HOM05D000211 ORTHO05D009901 6.7e-20 101.3 75 70.7
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 3.3e-19 99.0 56 87.5
PSO017G2337 Papaver somniferum HOM05D000211 ORTHO05D009901 5.7e-19 98.2 75 70.7
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 4.6e-13 78.6 54 68.5
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 1.0e-12 77.4 54 70.4
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 1.8e-12 76.6 84 51.2
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 5.1e-12 75.1 52 71.2
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 5.1e-12 75.1 78 53.8
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 6.7e-12 74.7 55 65.5
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 1.5e-11 73.6 80 51.2
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 1.9e-11 73.2 52 65.4
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 1.9e-11 73.2 52 65.4
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 1.9e-11 73.2 52 65.4
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 1.9e-11 73.2 52 65.4
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 1.9e-11 73.2 52 65.4
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 1.9e-11 73.2 52 65.4
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 1.9e-11 73.2 52 65.4
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 2.5e-11 72.8 78 51.3
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 4.3e-11 72.0 55 61.8
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 4.3e-11 72.0 52 63.5
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 5.7e-11 71.6 55 69.1
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 7.4e-11 71.2 52 63.5
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 7.4e-11 71.2 52 63.5
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 7.4e-11 71.2 62 56.5
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 7.4e-11 71.2 62 56.5
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 9.7e-11 70.9 54 64.8
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 1.3e-10 70.5 52 63.5
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 1.3e-10 70.5 80 47.5
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 1.7e-10 70.1 55 61.8
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 1.7e-10 70.1 55 61.8
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 2.2e-10 69.7 54 63.0
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 2.8e-10 69.3 61 54.1
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 2.8e-10 69.3 73 50.7
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 2.8e-10 69.3 73 50.7
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 2.8e-10 69.3 62 54.8
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 2.8e-10 69.3 62 54.8
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 2.8e-10 69.3 45 66.7
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 3.7e-10 68.9 49 69.4
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 3.7e-10 68.9 54 63.0
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 4.8e-10 68.6 62 53.2
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 4.8e-10 68.6 62 53.2
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 4.8e-10 68.6 62 53.2
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 4.8e-10 68.6 49 67.3
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 6.3e-10 68.2 46 67.4
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 6.3e-10 68.2 80 50.0
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 8.2e-10 67.8 44 70.5
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 8.2e-10 67.8 54 57.4
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 1.1e-09 67.4 79 46.8
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 1.8e-09 66.6 44 70.5
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 1.8e-09 66.6 44 68.2
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 2.4e-09 66.2 83 45.8
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 2.4e-09 66.2 54 59.3
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 4.1e-09 65.5 44 68.2
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 4.1e-09 65.5 44 68.2
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 5.3e-09 65.1 44 68.2
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 5.3e-09 65.1 44 68.2
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 5.3e-09 65.1 44 68.2
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 5.3e-09 65.1 44 68.2
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 5.3e-09 65.1 55 54.5
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 5.3e-09 65.1 44 65.9
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 5.3e-09 65.1 43 65.1
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 6.9e-09 64.7 44 70.5
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 6.9e-09 64.7 42 69.0
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 6.9e-09 64.7 80 48.8
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 9.1e-09 64.3 49 63.3
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 9.1e-09 64.3 44 68.2
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 9.1e-09 64.3 79 46.8
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 9.1e-09 64.3 44 68.2
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 9.1e-09 64.3 79 46.8
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.2e-08 63.9 43 72.1
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 1.2e-08 63.9 79 46.8
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 1.5e-08 63.5 78 46.2
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 1.5e-08 63.5 45 62.2
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 2.6e-08 62.8 43 65.1
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 2.6e-08 62.8 42 61.9
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 2.6e-08 62.8 44 65.9
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 3.4e-08 62.4 44 68.2
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 4.5e-08 62.0 42 66.7
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 4.5e-08 62.0 39 71.8
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 5.9e-08 61.6 42 66.7
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 5.9e-08 61.6 44 65.9
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 5.9e-08 61.6 44 63.6
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 5.9e-08 61.6 44 63.6
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 7.7e-08 61.2 45 62.2
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 7.7e-08 61.2 45 62.2
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 7.7e-08 61.2 77 45.5
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 1.0e-07 60.8 42 66.7
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 1.3e-07 60.5 79 43.0
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 1.7e-07 60.1 78 48.7
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 2.2e-07 59.7 38 68.4
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.2e-07 59.7 42 64.3
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 2.9e-07 59.3 39 69.2
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 2.9e-07 59.3 80 42.5
PSO063G6949 Papaver somniferum HOM05D000211 ORTHO05D009901 2.9e-07 59.3 47 63.8
PSO478G2113 Papaver somniferum HOM05D000211 ORTHO05D009901 2.9e-07 59.3 47 63.8
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 3.8e-07 58.9 44 61.4
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 5.0e-07 58.5 44 61.4
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 5.0e-07 58.5 44 61.4
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 5.0e-07 58.5 48 62.5
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 6.5e-07 58.2 45 57.8
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 6.5e-07 58.2 44 61.4
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 6.5e-07 58.2 44 59.1
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 8.5e-07 57.8 79 46.8
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 2.5e-06 56.2 44 59.1
PSO339G0672 Papaver somniferum HOM05D000211 ORTHO05D009901 2.5e-06 56.2 48 60.4
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 2.5e-06 56.2 39 61.5
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 2.5e-06 56.2 80 41.2
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 7.2e-06 54.7 42 61.9
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 9.4e-06 54.3 39 61.5


User provided reference genes

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