Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G1420 Papaver somniferum HOM05D006014 ORTHO05D007608 1.5e-90 336.3 186 100.0
PSO675G1148 Papaver somniferum HOM05D006014 ORTHO05D007608 3.8e-89 331.6 186 98.9
Nn1g04203 Nelumbo nucifera HOM05D006014 ORTHO05D007608 1.4e-51 206.8 177 68.4
Aqoxy1G02326 Aquilegia oxysepala HOM05D006014 ORTHO05D007608 1.8e-51 206.5 180 66.1
Nitab4.5_0013317g0010 Nicotiana tabacum HOM05D006014 ORTHO05D007608 4.1e-51 205.3 179 67.6
Ciclev10009636m.g Citrus clementina HOM05D006014 ORTHO05D007608 1.2e-50 203.8 178 65.7
Peaxi162Scf00069g01737 Petunia axillaris HOM05D006014 ORTHO05D007608 2.0e-50 203.0 168 69.0
CSS0037767 Camellia sinensis var. sinensis HOM05D006014 ORTHO05D007608 4.5e-50 201.8 168 67.3
Thecc.07G096300 Theobroma cacao HOM05D006014 ORTHO05D007608 1.3e-49 200.3 180 65.0
TAR624G0768 Trochodendron aralioides HOM05D006014 ORTHO05D007608 1.4e-48 196.8 168 64.3
MELO3C025609.2 Cucumis melo HOM05D006014 ORTHO05D007608 2.5e-48 196.1 186 61.3
CDE10G0058 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 3.2e-48 195.7 169 67.5
QL08p024005 Quercus lobata HOM05D006014 ORTHO05D007608 4.2e-48 195.3 189 64.6
COL.COLO4_03477 Corchorus olitorius HOM05D006014 ORTHO05D007608 7.2e-48 194.5 190 63.2
Solyc07g062870.3 Solanum lycopersicum HOM05D006014 ORTHO05D007608 2.7e-47 192.6 171 64.9
Sopen07g031070 Solanum pennellii HOM05D006014 ORTHO05D007608 2.7e-47 192.6 171 64.9
PGSC0003DMG400012405 Solanum tuberosum HOM05D006014 ORTHO05D007608 2.7e-47 192.6 147 70.7
Sed0004006 Sechium edule HOM05D006014 ORTHO05D007608 3.6e-47 192.2 155 65.8
TAR626G1430 Trochodendron aralioides HOM05D006014 ORTHO05D007608 3.6e-47 192.2 181 62.4
CsaV3_4G033460 Cucumis sativus L. HOM05D006014 ORTHO05D007608 4.7e-47 191.8 186 60.2
Manes.15G089600 Manihot esculenta HOM05D006014 ORTHO05D007608 4.7e-47 191.8 184 61.4
CDE10G1292 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 8.0e-47 191.0 169 66.3
Nitab4.5_0003033g0060 Nicotiana tabacum HOM05D006014 ORTHO05D007608 1.0e-46 190.7 154 68.2
Haze_09409 Corylus avellana HOM05D005607 ORTHO05D008142 1.4e-46 190.3 145 69.0
Dinv14938 Davidia involucrata HOM05D006014 ORTHO05D007608 1.4e-46 190.3 181 61.3
GSVIVG01014290001 Vitis vinifera HOM05D006014 ORTHO05D007608 1.8e-46 189.9 180 59.4
THA.LOC104815561 Tarenaya hassleriana HOM05D006014 ORTHO05D007608 3.0e-46 189.1 184 62.5
CiPaw.11G167800 Carya illinoinensis HOM05D006014 ORTHO05D007608 3.9e-46 188.7 150 67.3
Duzib170G0605 Durio zibethinus HOM05D006014 ORTHO05D007608 5.2e-46 188.3 194 60.3
DCAR_019570 Daucus carota HOM05D006014 ORTHO05D007608 2.0e-45 186.4 187 57.8
Hma1.2p1_1411F.1_g281760 Hydrangea macrophylla HOM05D006014 ORTHO05D007608 2.0e-45 186.4 159 66.7
MBI07_g30170_MAGBIO Magnolia biondii HOM05D006014 ORTHO05D007608 4.4e-45 185.3 137 73.0
ClCG11G017820 Citrullus lanatus HOM05D006014 ORTHO05D007608 7.4e-45 184.5 179 58.7
CARHR090180 Cardamine hirsuta HOM05D006014 ORTHO05D007608 2.2e-44 183.0 170 64.1
CANSAT35G1465 Cannabis sativa HOM05D006014 ORTHO05D007608 3.7e-44 182.2 174 59.8
PGR083G0398 Punica granatum HOM05D006014 ORTHO05D007608 3.7e-44 182.2 182 61.5
Sp3g13400 Schrenkiella parvula HOM05D006014 ORTHO05D007608 6.3e-44 181.4 193 58.5
Nitab4.5_0002330g0100 Nicotiana tabacum HOM05D006014 ORTHO05D007608 8.2e-44 181.0 191 59.7
Gohir.D05G347800 Gossypium hirsutum HOM05D006014 ORTHO05D007608 1.8e-43 179.9 183 61.2
Gorai.009G375600 Gossypium raimondii HOM05D006014 ORTHO05D007608 1.8e-43 179.9 183 61.2
Cc05_g11740 Coffea canephora HOM05D006014 ORTHO05D007608 2.4e-43 179.5 187 56.7
FAN21G0470 Fragaria x ananassa HOM05D006014 ORTHO05D007608 2.4e-43 179.5 180 61.1
Sabra16G0259700 Salix brachista HOM05D006014 ORTHO05D007608 2.4e-43 179.5 170 61.2
FvH4_3g19430 Fragaria vesca HOM05D006014 ORTHO05D007608 3.1e-43 179.1 180 61.1
FAN11G2300 Fragaria x ananassa HOM05D006014 ORTHO05D007608 3.1e-43 179.1 180 61.1
Glyma.12G162300 Glycine max HOM05D006014 ORTHO05D007608 4.1e-43 178.7 187 59.9
Gohir.A04G035600 Gossypium hirsutum HOM05D006014 ORTHO05D007608 4.1e-43 178.7 183 61.7
TWI38G2086 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 4.1e-43 178.7 181 58.6
arahy.Tifrunner.gnm1.ann1.FY4UJ9 Arachis hypogaea HOM05D006014 ORTHO05D007608 5.3e-43 178.3 225 51.6
C01p49380 Brassica napus HOM05D006014 ORTHO05D007608 5.3e-43 178.3 168 61.3
FAN25G0078 Fragaria x ananassa HOM05D006014 ORTHO05D007608 5.3e-43 178.3 180 60.6
Eucgr.F01167 Eucalyptus grandis HOM05D006014 ORTHO05D007608 7.0e-43 177.9 181 60.8
Potri.001G396600 Populus trichocarpa HOM05D006014 ORTHO05D007608 7.0e-43 177.9 170 59.4
BcaB04g20944 Brassica carinata HOM05D006014 ORTHO05D007608 9.1e-43 177.6 161 64.0
MD03G1232600 Malus domestica HOM05D006014 ORTHO05D007608 9.1e-43 177.6 183 60.7
BolC1t04895H Brassica oleracea HOM05D006014 ORTHO05D007608 1.2e-42 177.2 165 61.8
MD11G1253300 Malus domestica HOM05D006014 ORTHO05D007608 1.2e-42 177.2 145 66.9
RcHm_v2.0_Chr5g0032711 Rosa chinensis HOM05D006014 ORTHO05D007608 1.2e-42 177.2 181 59.1
A03p39200 Brassica napus HOM05D006014 ORTHO05D007608 1.6e-42 176.8 168 62.5
A05p34280 Brassica napus HOM05D006014 ORTHO05D007608 1.6e-42 176.8 145 69.0
BraA05t22249Z Brassica rapa HOM05D006014 ORTHO05D007608 1.6e-42 176.8 145 69.0
TPR.G28172 Trifolium pratense HOM05D006014 ORTHO05D007608 1.6e-42 176.8 182 61.0
AL3G27580 Arabidopsis lyrata HOM05D006014 ORTHO05D007608 2.0e-42 176.4 190 58.4
Glyma.06G236200 Glycine max HOM05D006014 ORTHO05D007608 2.0e-42 176.4 184 61.4
AT3G15190 Arabidopsis thaliana HOM05D006014 ORTHO05D007608 2.6e-42 176.0 188 60.1
BraA03t13069Z Brassica rapa HOM05D006014 ORTHO05D007608 2.6e-42 176.0 168 62.5
Oeu051088.1 Olea europaea HOM05D006014 ORTHO05D007608 2.6e-42 176.0 148 64.2
Migut.H01957 Erythranthe guttata HOM05D006014 ORTHO05D007608 7.7e-42 174.5 183 58.5
Aa31LG8G2390 Aethionema arabicum HOM05D006014 ORTHO05D007608 1.0e-41 174.1 138 68.8
Oeu037371.1 Olea europaea HOM05D006014 ORTHO05D007608 1.0e-41 174.1 146 62.3
BcaB06g29543 Brassica carinata HOM05D006014 ORTHO05D007608 1.3e-41 173.7 191 56.0
Thhalv10021521m.g Eutrema salsugineum HOM05D006014 ORTHO05D007608 1.3e-41 173.7 149 67.1
VMungo1127G0848 Vigna mungo HOM05D006014 ORTHO05D007608 1.3e-41 173.7 190 59.5
Psat4g136440 Pisum sativum HOM05D006014 ORTHO05D007608 1.7e-41 173.3 181 58.6
Sc03g0010200 Simmondsia chinensis HOM05D006014 ORTHO05D007608 1.7e-41 173.3 185 56.8
BcaC01g03887 Brassica carinata HOM05D006014 ORTHO05D007608 2.2e-41 172.9 120 75.8
C03p47570 Brassica napus HOM05D006014 ORTHO05D007608 2.2e-41 172.9 120 75.8
Carub.0003s1484 Capsella rubella HOM05D006014 ORTHO05D007608 2.2e-41 172.9 188 59.0
Lj3g0022855 Lotus japonicus HOM05D006014 ORTHO05D007608 2.2e-41 172.9 179 57.5
BolC3t17032H Brassica oleracea HOM05D006014 ORTHO05D007608 2.9e-41 172.6 120 75.8
Lalb_Chr07g0182891 Lupinus albus HOM05D006014 ORTHO05D007608 3.8e-41 172.2 182 59.3
Ca_23028_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 5.0e-41 171.8 181 61.3
Ca_23030_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 5.0e-41 171.8 181 61.3
Prupe.4G176000 Prunus persica HOM05D006014 ORTHO05D007608 5.0e-41 171.8 182 57.7
A01p38830 Brassica napus HOM05D006014 ORTHO05D007608 6.5e-41 171.4 181 59.1
BraA01t03929Z Brassica rapa HOM05D006014 ORTHO05D007608 6.5e-41 171.4 181 59.1
MSTRG.12894 Avicennia marina HOM05D006014 ORTHO05D007608 8.5e-41 171.0 178 56.7
SalBow8G3070 Salvia bowleyana HOM05D006014 ORTHO05D007608 1.1e-40 170.6 178 60.1
C05p52040 Brassica napus HOM05D006014 ORTHO05D007608 1.5e-40 170.2 191 55.0
AUR62036161 Chenopodium quinoa HOM05D006014 ORTHO05D007608 1.9e-40 169.9 182 58.2
Phvul.011G162800 Phaseolus vulgaris HOM05D006014 ORTHO05D007608 2.5e-40 169.5 187 58.8
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 3.2e-40 169.1 126 70.6
AUR62019472 Chenopodium quinoa HOM05D006014 ORTHO05D007608 3.2e-40 169.1 182 58.2
Ah.06g184580 Amaranthus hybridus HOM05D006014 ORTHO05D007608 7.2e-40 167.9 185 57.3
Hund04492 Selenicereus undatus HOM05D006014 ORTHO05D007608 9.4e-40 167.5 184 56.0
Nitab4.5_0000332g0180 Nicotiana tabacum HOM05D006014 ORTHO05D007608 2.7e-39 166.0 155 61.9
EL10Ac4g08237 Beta vulgaris HOM05D006014 ORTHO05D007608 4.7e-39 165.2 182 57.1
ATR0737G141 Amborella trichopoda HOM05D006014 ORTHO05D007608 4.0e-38 162.2 114 74.6
Lsat_1_v5_gn_5_128220 Lactuca sativa HOM05D006014 ORTHO05D007608 4.0e-38 162.2 181 58.0
Medtr8g061350 Medicago truncatula HOM05D006014 ORTHO05D007608 8.8e-38 161.0 182 57.1
Actinidia35240 Actinidia chinensis HOM05D006014 ORTHO05D007608 4.4e-37 158.7 135 65.2
ECA234G0345 Erigeron canadensis HOM05D006014 ORTHO05D007608 2.2e-36 156.4 181 53.6
HanXRQChr10g0302621 Helianthus annuus HOM05D006014 ORTHO05D007608 4.8e-36 155.2 157 60.5
Sed0026173 Sechium edule HOM05D006014 ORTHO05D007608 1.1e-35 154.1 151 57.0
arahy.Tifrunner.gnm1.ann1.QT5AN8 Arachis hypogaea HOM05D006014 ORTHO05D007608 1.2e-34 150.6 276 39.9
unitig_749.g13531 Utricularia gibba HOM05D005607 ORTHO05D008142 3.5e-34 149.1 159 60.4
TWI39G1175 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 1.0e-33 147.5 128 62.5
Rhsim04G0022600 Rhododendron simsii HOM05D006014 ORTHO05D007608 4.2e-32 142.1 148 54.7
SEGI_01083 Sequoiadendron giganteum HOM05D006014 ORTHO05D007608 4.0e-30 135.6 175 49.1
Pp3c24_17080 Physcomitrium patens HOM05D006014 ORTHO05D007608 2.4e-27 126.3 119 62.2
Lj3g0017472 Lotus japonicus HOM05D006014 ORTHO05D007608 3.1e-27 125.9 114 60.5
Mapoly0009s0159 Marchantia polymorpha HOM05D006014 ORTHO05D007608 4.1e-27 125.6 184 48.9
Lj8A154T77 Lonicera japonica HOM05D006014 ORTHO05D007608 5.9e-26 121.7 171 45.6
Zm00001eb360330 Zea mays HOM05D006014 ORTHO05D007608 1.0e-25 120.9 172 46.5
Os01g0678600 Oryza sativa ssp. japonica HOM05D006014 ORTHO05D007608 5.0e-25 118.6 181 42.5
Pp3c20_13390 Physcomitrium patens HOM05D006014 ORTHO05D007608 2.5e-24 116.3 119 57.1
vmacro09523 Vaccinium macrocarpon HOM05D006014 ORTHO05D007608 5.2e-22 108.6 73 71.2
CBR_g30802 Chara braunii HOM05D006014 ORTHO05D007608 7.5e-21 104.8 155 46.5
BcaC09g48477 Brassica carinata HOM05D006014 ORTHO05D007608 1.3e-20 104.0 121 55.4
AagrBONN_evm.TU.Sc2ySwM_344.3794 Anthoceros agrestis HOM05D006014 ORTHO05D007608 2.8e-20 102.8 149 45.6
SGA_v2.0_scaffold70G23686 Striga asiatica HOM05D006014 ORTHO05D007608 1.9e-16 90.1 345 28.7
Gohir.A13G146850 Gossypium hirsutum HOM05D006014 ORTHO05D007608 6.1e-15 85.1 77 63.6
CBR_g39307 Chara braunii HOM05D006014 ORTHO05D007608 3.1e-14 82.8 83 54.2
Dinv20203 Davidia involucrata HOM05D006014 ORTHO05D007608 1.3e-12 77.4 94 52.1
Cre12.g494750 Chlamydomonas reinhardtii HOM05D006014 ORTHO05D007608 2.2e-12 76.6 124 44.4
Cpa.g.sc131.85 Carica papaya HOM05D006014 ORTHO05D007608 1.9e-11 73.6 108 48.1
MCO10G118 Micromonas commoda HOM05D006014 ORTHO05D007608 7.0e-11 71.6 91 45.1
HPP92_010061 Vanilla planifolia HOM05D006014 ORTHO05D007608 1.2e-10 70.9 75 61.3
Atru.chr2.2408 Acer truncatum HOM05D006014 ORTHO05D007608 8.6e-09 64.7 50 74.0
QL11p029078 Quercus lobata HOM05D006014 ORTHO05D013998 2.8e-07 59.7 39 79.5


User provided reference genes

Program Settings