Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1424.8 699 100.0
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1391.3 699 97.6
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 0.0e+00 1226.1 697 83.8
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 0.0e+00 1209.5 695 82.9
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 0.0e+00 1208.7 697 82.2
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1207.6 695 82.4
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 0.0e+00 1207.2 695 82.6
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 0.0e+00 1203.3 695 81.4
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1202.2 695 82.0
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 0.0e+00 1202.2 695 82.4
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 0.0e+00 1194.5 692 82.1
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 0.0e+00 1189.9 695 82.0
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 0.0e+00 1189.9 695 81.7
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 0.0e+00 1183.3 695 81.3
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 0.0e+00 1181.8 695 81.6
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1181.4 694 80.8
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1179.9 696 80.9
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 0.0e+00 1179.1 695 81.2
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 0.0e+00 1178.7 697 80.1
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1174.5 697 79.5
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1174.1 696 80.5
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1173.3 695 80.1
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1171.8 695 79.9
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1169.8 697 80.9
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 0.0e+00 1166.4 695 80.6
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1165.6 698 78.4
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 0.0e+00 1165.2 695 79.1
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 0.0e+00 1164.4 695 80.1
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1164.1 694 80.0
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 0.0e+00 1164.1 695 79.4
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 0.0e+00 1162.9 695 80.1
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 0.0e+00 1162.1 695 80.3
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 0.0e+00 1161.7 724 78.5
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 0.0e+00 1161.4 695 78.3
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1161.4 695 79.9
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 0.0e+00 1160.6 695 80.1
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 0.0e+00 1159.1 695 79.4
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 0.0e+00 1158.7 693 80.1
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 0.0e+00 1157.5 699 79.5
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 0.0e+00 1157.5 693 80.1
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 0.0e+00 1157.1 695 79.7
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 0.0e+00 1156.0 695 79.4
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1155.6 694 80.1
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 0.0e+00 1155.2 695 79.1
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 0.0e+00 1154.4 694 79.4
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1154.0 696 79.0
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 0.0e+00 1152.9 695 79.0
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1152.1 695 79.3
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1152.1 693 79.4
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1150.2 694 79.1
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 0.0e+00 1149.8 695 79.3
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 0.0e+00 1148.7 674 80.7
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1148.7 695 78.4
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 0.0e+00 1148.3 695 79.0
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1147.9 693 79.2
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 0.0e+00 1144.4 695 78.7
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 0.0e+00 1143.6 695 77.0
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1140.6 697 78.0
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1140.2 697 78.6
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 0.0e+00 1140.2 696 78.6
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1139.8 697 76.6
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 0.0e+00 1139.8 697 76.5
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 0.0e+00 1139.8 697 79.3
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 0.0e+00 1139.0 698 77.1
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1138.6 695 78.8
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 0.0e+00 1138.6 696 77.9
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 0.0e+00 1138.3 696 78.4
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 0.0e+00 1137.5 698 76.4
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1135.6 695 79.0
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 0.0e+00 1135.2 699 77.7
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 0.0e+00 1134.4 698 76.2
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 0.0e+00 1134.4 697 76.3
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1134.0 695 76.4
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 0.0e+00 1133.6 698 76.2
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 0.0e+00 1132.1 697 76.8
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1130.9 695 76.0
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 0.0e+00 1127.9 697 77.2
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 0.0e+00 1127.1 688 76.9
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 0.0e+00 1126.7 696 78.2
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1116.7 753 73.2
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1116.3 720 75.8
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 0.0e+00 1107.8 717 75.7
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1107.4 694 76.8
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1105.5 697 77.2
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1104.4 742 73.6
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1104.0 714 73.8
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 0.0e+00 1103.2 695 77.1
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1102.4 695 76.3
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1101.3 694 76.7
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 0.0e+00 1090.1 647 79.3
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 0.0e+00 1087.8 678 76.1
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 0.0e+00 1083.6 698 74.6
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 4.4e-308 1060.8 682 74.9
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 7.5e-308 1060.1 682 75.1
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 1.7e-307 1058.9 696 74.6
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 3.7e-307 1057.7 624 80.6
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 1.1e-306 1056.2 697 74.3
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 6.0e-305 1050.4 704 72.7
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 4.6e-297 1024.2 695 72.5
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 1.0e-296 1023.1 703 70.4
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 7.3e-295 1016.9 689 70.7
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 1.3e-291 1006.1 582 81.4
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 8.7e-272 940.3 639 71.8
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 1.8e-256 889.4 582 72.3
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 1.1e-253 880.2 709 64.9
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 9.1e-253 877.1 541 78.0
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 3.7e-246 855.1 700 60.3
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 1.6e-233 813.1 540 73.7
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 7.0e-229 797.7 694 56.6
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.3e-227 793.5 704 57.4
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.3e-227 793.5 704 57.4
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 5.2e-224 781.6 705 57.3
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.7e-220 769.2 704 55.8
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 1.5e-215 753.4 476 77.9
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 1.3e-214 750.4 711 55.4
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 6.6e-179 631.7 387 77.8
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 1.4e-160 570.9 721 45.1
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 1.4e-144 517.7 378 66.9
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 3.9e-139 499.6 505 53.9
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 2.3e-107 394.0 344 60.5
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 1.3e-105 388.3 764 35.5
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 5.0e-102 376.3 249 73.9
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 7.5e-98 362.5 814 32.4
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 7.0e-96 355.9 269 63.9
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 1.4e-75 288.5 248 59.7
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 4.0e-75 287.0 176 76.7
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 4.4e-74 283.5 246 61.4
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 2.3e-70 271.2 166 76.5
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 3.3e-69 267.3 193 67.9
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 8.4e-65 252.7 624 31.4
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 1.7e-62 245.0 246 53.3
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 1.3e-52 212.2 134 73.1
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 5.6e-45 186.8 138 69.6
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 3.4e-42 177.6 145 64.1
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 3.9e-38 164.1 97 79.4
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 4.0e-35 154.1 216 44.0
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 9.3e-32 142.9 75 86.7
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 3.5e-31 141.0 76 84.2
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 1.3e-25 122.5 84 67.9
TAR625G0301 Trochodendron aralioides HOM05D005163 ORTHO05D006462 3.7e-20 104.4 85 57.6
SHI08598 Sapria himalayana HOM05D005163 ORTHO05D006462 8.5e-17 93.2 87 56.3
BolC8t50252H Brassica oleracea HOM05D005163 ORTHO05D041294 5.7e-13 80.5 49 77.6
C08p26350 Brassica napus HOM05D005163 ORTHO05D041294 4.8e-12 77.4 49 71.4


User provided reference genes

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