Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 2107.8 1085 100.0
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 2070.4 1087 98.4
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1762.3 1088 81.4
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1754.6 1090 80.5
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1739.9 1087 79.9
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1738.0 1089 80.6
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1729.1 1091 80.9
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1720.7 1091 78.4
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1717.2 1089 79.2
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1716.0 1093 78.6
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1714.9 1094 78.3
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1714.1 1107 78.4
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1713.4 1093 78.6
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1708.0 1097 78.9
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1707.6 1089 79.3
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1707.2 1096 78.2
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1706.4 1090 78.3
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1705.6 1093 78.2
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1704.5 1007 83.4
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1704.1 1089 77.9
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1701.0 1091 78.7
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1700.3 1091 78.5
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1692.9 1090 77.6
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1684.8 1007 82.5
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1684.5 1015 82.0
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1683.7 1091 78.2
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1683.7 1093 77.5
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1681.4 1007 82.4
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1677.5 1087 77.3
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1677.5 1088 77.7
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1675.6 1032 80.9
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1675.2 1021 81.3
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1674.4 1094 77.0
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1674.4 1090 76.8
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1671.4 1091 76.9
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1671.4 1040 80.2
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1669.4 1100 76.4
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1668.7 1107 76.4
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1664.4 1100 76.4
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1663.3 1089 76.9
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1663.3 1128 74.6
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1662.5 1089 76.5
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1662.5 1067 78.2
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1662.5 1092 76.2
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1661.4 1092 76.2
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1655.6 1015 81.1
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1655.6 1093 76.2
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1655.2 1020 80.3
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1652.1 1094 75.9
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1647.5 984 81.5
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1645.2 1008 79.7
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1645.2 1099 75.5
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1645.2 1099 75.5
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1644.8 1087 75.3
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1644.4 1087 74.9
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1642.9 1099 75.3
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1640.6 1114 74.9
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1637.5 1099 75.4
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1637.1 1024 78.8
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1636.3 1094 76.0
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1635.9 1094 74.6
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1630.9 1101 74.3
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1627.1 1006 79.2
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1622.4 1102 73.8
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1619.4 1083 74.4
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1618.6 1092 75.5
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1613.6 1096 73.4
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1613.6 1113 73.6
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1612.4 1084 73.9
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1611.3 1004 78.5
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1609.7 1100 73.0
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1609.7 1083 73.8
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1609.7 1082 73.9
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1606.7 1099 74.4
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1605.9 1084 73.5
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1605.5 1082 73.8
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1605.1 1085 73.3
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1604.7 1097 72.9
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1603.2 1018 78.4
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1602.0 1082 73.6
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1601.3 1084 73.4
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1600.9 1082 73.4
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1598.6 1084 73.5
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1597.4 1082 73.0
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1596.3 1082 73.5
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1595.9 1099 72.4
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1595.9 1082 73.4
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1593.9 1084 73.2
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1592.4 1082 73.1
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1589.3 1203 68.7
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1587.4 1087 73.0
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1585.5 1004 77.0
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1582.0 1088 74.2
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1578.9 1149 69.5
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1578.1 982 77.6
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1577.4 1089 72.8
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1574.7 1175 69.6
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1573.1 1036 75.2
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1573.1 987 77.3
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1572.0 988 77.1
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1566.6 987 76.8
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1566.2 1082 72.4
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1557.7 1004 76.2
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1553.9 1126 70.4
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1545.4 982 77.5
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1498.0 869 84.7
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1496.1 1119 69.4
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1486.1 968 75.2
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1471.8 1001 70.8
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1469.1 914 78.8
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1453.7 1090 70.6
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1444.9 938 76.0
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1431.4 1002 69.3
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1387.5 953 70.3
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1335.1 1109 64.7
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1334.7 1109 64.7
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1325.5 801 81.4
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1301.2 977 65.8
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 0.0e+00 1203.0 853 72.5
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1197.2 1032 60.1
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1152.9 748 77.1
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1138.3 758 76.5
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1122.1 722 77.0
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 0.0e+00 1105.9 981 54.6
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 0.0e+00 1105.5 1052 53.6
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 0.0e+00 1089.7 980 55.5
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 7.3e-310 1067.4 739 72.5
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 1.8e-287 993.0 881 58.6
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 4.2e-273 945.3 892 57.6
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 5.7e-270 934.9 777 59.7
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 6.3e-261 904.8 596 76.8
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 1.2e-256 890.6 579 73.1
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 5.0e-242 842.0 972 44.8
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 3.5e-219 766.1 671 57.7
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 3.3e-209 733.0 646 59.8
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 2.6e-206 723.4 740 52.8
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.6e-195 687.6 408 82.6
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.1e-179 634.0 529 64.8
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.1e-172 611.7 413 73.6
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 4.8e-168 596.3 343 82.5
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 1.7e-165 587.8 347 85.9
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.2e-163 581.6 509 62.1
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 4.6e-155 553.1 405 66.9
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 2.6e-153 547.4 393 67.2
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 5.0e-149 533.1 496 59.7
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 7.0e-135 486.1 327 72.8
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 8.8e-130 469.2 396 62.1
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 3.4e-129 467.2 309 75.1
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 5.2e-122 443.4 418 57.4
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 1.8e-111 408.3 990 30.4
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 2.1e-107 394.8 987 29.5
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 4.1e-103 380.6 980 28.2
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 1.3e-96 359.0 227 78.4
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 1.7e-96 358.6 216 80.1
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 5.6e-92 343.6 913 30.0
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 2.9e-80 304.7 154 89.6
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 4.8e-59 234.2 222 54.5
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 1.4e-58 232.6 869 24.4
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 1.1e-52 213.0 332 36.1
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 2.4e-50 205.3 308 41.9
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 3.0e-45 188.3 217 53.5
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 1.9e-44 185.7 124 75.8
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 1.3e-43 183.0 192 54.2
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 2.0e-41 175.6 154 56.5
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 2.0e-41 175.6 147 59.9
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 1.2e-38 166.4 273 37.7
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 1.7e-35 156.0 462 27.5
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 1.8e-34 152.5 134 60.4
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 3.1e-34 151.8 149 53.7
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 3.8e-32 144.8 162 43.2
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 1.3e-27 129.8 423 25.5
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 3.5e-25 121.7 105 58.1
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 2.2e-24 119.0 161 48.4
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 1.2e-22 113.2 290 25.2
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 2.8e-19 102.1 77 62.3
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.6e-12 79.0 83 50.6
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 3.4e-12 78.6 51 70.6
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 6.3e-11 74.3 45 75.6
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 1.8e-10 72.8 53 64.2
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 9.1e-10 70.5 63 54.0
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 2.9e-08 65.5 36 86.1
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 3.8e-08 65.1 100 40.0
MD05G1078700 Malus domestica HOM05D003855 ORTHO05D004722 3.6e-06 58.5 75 41.3


User provided reference genes

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