Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G0678 Papaver somniferum HOM05D003750 ORTHO05D004337 1.6e-112 409.8 279 100.0
PSO675G0845 Papaver somniferum HOM05D003750 ORTHO05D004337 5.5e-100 368.2 276 94.6
TAR626G1101 Trochodendron aralioides HOM05D003750 ORTHO05D004337 9.5e-36 154.8 311 47.6
Nn6g34390 Nelumbo nucifera HOM05D003750 ORTHO05D004337 1.2e-35 154.5 275 43.6
Nitab4.5_0006934g0020 Nicotiana tabacum HOM05D003750 ORTHO05D004337 1.2e-33 147.9 130 60.0
Phvul.006G033900 Phaseolus vulgaris HOM05D003750 ORTHO05D004337 1.5e-33 147.5 281 51.2
Actinidia11198 Actinidia chinensis HOM05D003750 ORTHO05D004337 3.4e-33 146.4 298 50.0
CAN.G585.54 Capsicum annuum HOM05D003750 ORTHO05D004337 7.5e-33 145.2 293 47.4
Nitab4.5_0000446g0080 Nicotiana tabacum HOM05D003750 ORTHO05D004337 7.5e-33 145.2 130 58.5
Peaxi162Scf00807g00024 Petunia axillaris HOM05D003750 ORTHO05D004337 1.3e-32 144.4 130 58.5
Glyma.18G106400 Glycine max HOM05D003750 ORTHO05D004337 1.7e-32 144.1 293 46.8
VMungo0540G2251 Vigna mungo HOM05D003750 ORTHO05D004337 2.2e-32 143.7 284 47.9
ClCG09G022350 Citrullus lanatus HOM05D003750 ORTHO05D004337 2.9e-32 143.3 128 56.2
CiPaw.03G189300 Carya illinoinensis HOM05D003750 ORTHO05D004337 3.7e-32 142.9 128 59.4
Cfa022914 Carpinus fangiana HOM05D003750 ORTHO05D004337 4.9e-32 142.5 126 56.3
Duzib187G0136 Durio zibethinus HOM05D003750 ORTHO05D004337 6.4e-32 142.1 123 58.5
AT2G42840 Arabidopsis thaliana HOM05D003750 ORTHO05D004337 8.3e-32 141.7 191 51.8
Gohir.A05G378400 Gossypium hirsutum HOM05D003750 ORTHO05D004337 8.3e-32 141.7 124 57.3
Oeu020066.1 Olea europaea HOM05D003750 ORTHO05D004337 8.3e-32 141.7 128 60.9
QL08p043924 Quercus lobata HOM05D003750 ORTHO05D004337 1.1e-31 141.4 126 57.9
Ca_27365_v3 Cicer arietinum L. HOM05D003750 ORTHO05D004337 1.8e-31 140.6 130 51.5
Haze_13489 Corylus avellana HOM05D003750 ORTHO05D004337 1.8e-31 140.6 126 57.1
Gorai.012G041900 Gossypium raimondii HOM05D003750 ORTHO05D004337 1.8e-31 140.6 124 58.1
AL4G41450 Arabidopsis lyrata HOM05D003750 ORTHO05D004337 2.4e-31 140.2 127 59.1
BcaNung06740 Brassica carinata HOM05D003750 ORTHO05D004337 2.4e-31 140.2 125 58.4
A05p03190 Brassica napus HOM05D003750 ORTHO05D004337 2.4e-31 140.2 125 58.4
C04p03840 Brassica napus HOM05D003750 ORTHO05D004337 2.4e-31 140.2 125 58.4
BolC4t22020H Brassica oleracea HOM05D003750 ORTHO05D004337 2.4e-31 140.2 125 58.4
BraA05t19309Z Brassica rapa HOM05D003750 ORTHO05D004337 2.4e-31 140.2 125 58.4
Cc05_g09310 Coffea canephora HOM05D003750 ORTHO05D004337 2.4e-31 140.2 304 49.7
Thhalv10016927m.g Eutrema salsugineum HOM05D003750 ORTHO05D004337 2.4e-31 140.2 183 52.5
Lalb_Chr17g0348311 Lupinus albus HOM05D003750 ORTHO05D004337 2.4e-31 140.2 125 55.2
Nitab4.5_0013539g0020 Nicotiana tabacum HOM05D003750 ORTHO05D004337 2.4e-31 140.2 124 62.1
Peaxi162Scf00688g00432 Petunia axillaris HOM05D003750 ORTHO05D004337 2.4e-31 140.2 130 58.5
Psat0s4925g0080 Pisum sativum HOM05D003750 ORTHO05D004337 2.4e-31 140.2 302 43.0
THA.LOC104803179 Tarenaya hassleriana HOM05D003750 ORTHO05D004337 3.2e-31 139.8 125 55.2
Gohir.D04G037100 Gossypium hirsutum HOM05D003750 ORTHO05D004337 4.1e-31 139.4 124 57.3
Medtr3g089570 Medicago truncatula HOM05D003750 ORTHO05D004337 4.1e-31 139.4 121 55.4
RcHm_v2.0_Chr2g0151161 Rosa chinensis HOM05D003750 ORTHO05D004337 4.1e-31 139.4 128 56.2
Sp4g24960 Schrenkiella parvula HOM05D003750 ORTHO05D004337 4.1e-31 139.4 122 58.2
Duzib264G0293 Durio zibethinus HOM05D003750 ORTHO05D004337 5.4e-31 139.0 120 60.8
Phvul.008G190900 Phaseolus vulgaris HOM05D003750 ORTHO05D004337 5.4e-31 139.0 127 54.3
CARHR137920 Cardamine hirsuta HOM05D003750 ORTHO05D004337 7.0e-31 138.7 123 58.5
Nn3g20965 Nelumbo nucifera HOM05D003750 ORTHO05D004337 7.0e-31 138.7 277 46.9
arahy.Tifrunner.gnm1.ann1.UWZ29M Arachis hypogaea HOM05D003750 ORTHO05D004337 9.2e-31 138.3 150 52.0
FAN05G3098 Fragaria x ananassa HOM05D003750 ORTHO05D004337 9.2e-31 138.3 128 56.2
PGR142G2515 Punica granatum HOM05D003750 ORTHO05D004337 9.2e-31 138.3 259 54.4
BcaC02g07218 Brassica carinata HOM05D003750 ORTHO05D004337 1.2e-30 137.9 122 58.2
A04p32410 Brassica napus HOM05D003750 ORTHO05D004337 1.2e-30 137.9 122 58.2
C04p69930 Brassica napus HOM05D003750 ORTHO05D004337 1.2e-30 137.9 122 58.2
BolC4t28493H Brassica oleracea HOM05D003750 ORTHO05D004337 1.2e-30 137.9 122 58.2
BraA04t18694Z Brassica rapa HOM05D003750 ORTHO05D004337 1.2e-30 137.9 122 58.2
Psat2g014640 Pisum sativum HOM05D003750 ORTHO05D004337 1.2e-30 137.9 146 50.7
BcaB06g29267 Brassica carinata HOM05D003750 ORTHO05D004337 1.6e-30 137.5 181 51.9
COL.COLO4_33737 Corchorus olitorius HOM05D003750 ORTHO05D004337 1.6e-30 137.5 149 55.0
Glyma.08G309700 Glycine max HOM05D003750 ORTHO05D004337 1.6e-30 137.5 295 44.4
Nitab4.5_0001675g0060 Nicotiana tabacum HOM05D003750 ORTHO05D004337 1.6e-30 137.5 300 41.7
Prupe.3G171000 Prunus persica HOM05D003750 ORTHO05D004337 1.6e-30 137.5 148 51.4
TWI59G1023 Tripterygium wilfordii HOM05D003750 ORTHO05D004337 1.6e-30 137.5 299 46.5
Solyc07g055950.3 Solanum lycopersicum HOM05D003750 ORTHO05D004337 2.0e-30 137.1 124 60.5
arahy.Tifrunner.gnm1.ann1.Y7JGW6 Arachis hypogaea HOM05D003750 ORTHO05D004337 2.7e-30 136.7 150 51.3
Thecc.01G160900 Theobroma cacao HOM05D003750 ORTHO05D004337 2.7e-30 136.7 120 58.3
Duzib147G0801 Durio zibethinus HOM05D003750 ORTHO05D004337 3.5e-30 136.3 120 58.3
Glyma.02G287400 Glycine max HOM05D003750 ORTHO05D004337 3.5e-30 136.3 127 55.1
Lalb_Chr19g0137861 Lupinus albus HOM05D003750 ORTHO05D004337 3.5e-30 136.3 281 46.6
Solyc12g011010.2 Solanum lycopersicum HOM05D003750 ORTHO05D004337 3.5e-30 136.3 124 57.3
Sopen07g029310 Solanum pennellii HOM05D003750 ORTHO05D004337 4.6e-30 136.0 124 59.7
VMungo0647G1422 Vigna mungo HOM05D003750 ORTHO05D004337 4.6e-30 136.0 125 52.8
Ciclev10032169m.g Citrus clementina HOM05D003750 ORTHO05D004337 5.9e-30 135.6 149 50.3
CsaV3_6G038000 Cucumis sativus L. HOM05D003750 ORTHO05D004337 5.9e-30 135.6 119 54.6
Eucgr.K01198 Eucalyptus grandis HOM05D003750 ORTHO05D004337 5.9e-30 135.6 178 52.2
Sed0024619 Sechium edule HOM05D003750 ORTHO05D004337 5.9e-30 135.6 128 51.6
Carub.0004s2528 Capsella rubella HOM05D003750 ORTHO05D004337 7.8e-30 135.2 122 57.4
FAN02G2641 Fragaria x ananassa HOM05D003750 ORTHO05D004337 7.8e-30 135.2 128 55.5
MD09G1154000 Malus domestica HOM05D003750 ORTHO05D004337 7.8e-30 135.2 126 53.2
Aa31LG1G24600 Aethionema arabicum HOM05D003750 ORTHO05D004337 1.0e-29 134.8 125 54.4
LjContig00310g0001182 Lotus japonicus HOM05D003750 ORTHO05D004337 1.0e-29 134.8 127 54.3
Lalb_Chr04g0248731 Lupinus albus HOM05D003750 ORTHO05D004337 1.0e-29 134.8 123 54.5
PGSC0003DMG400017342 Solanum tuberosum HOM05D003750 ORTHO05D004337 1.0e-29 134.8 278 47.1
Glyma.14G027551 Glycine max HOM05D003750 ORTHO05D004337 1.3e-29 134.4 123 53.7
TAR624G1252 Trochodendron aralioides HOM05D002606 ORTHO05D003016 1.7e-29 134.0 177 45.8
Lalb_Chr20g0108881 Lupinus albus HOM05D003750 ORTHO05D004337 3.0e-29 133.3 283 50.9
TPR.G12519 Trifolium pratense HOM05D003750 ORTHO05D004337 3.0e-29 133.3 127 52.0
TWI14G1010 Tripterygium wilfordii HOM05D003750 ORTHO05D004337 3.0e-29 133.3 291 41.6
Lsat_1_v5_gn_3_35901 Lactuca sativa HOM05D003750 ORTHO05D004337 3.9e-29 132.9 147 49.7
MD17G1140600 Malus domestica HOM05D003750 ORTHO05D004337 3.9e-29 132.9 126 52.4
Potri.002G060800 Populus trichocarpa HOM05D003750 ORTHO05D004337 5.0e-29 132.5 287 42.2
PGSC0003DMG400007796 Solanum tuberosum HOM05D003750 ORTHO05D004337 5.0e-29 132.5 124 55.6
Cpa.g.sc50.77 Carica papaya HOM05D003750 ORTHO05D004337 8.6e-29 131.7 124 54.8
FAN14G5523 Fragaria x ananassa HOM05D003750 ORTHO05D004337 8.6e-29 131.7 122 54.9
HanXRQChr06g0171371 Helianthus annuus HOM05D003750 ORTHO05D004337 1.5e-28 131.0 151 47.7
Sopen10g003700 Solanum pennellii HOM05D003750 ORTHO05D004337 1.5e-28 131.0 128 54.7
Rhsim06G0118400 Rhododendron simsii HOM05D003750 ORTHO05D004337 2.5e-28 130.2 126 53.2
Solyc10g007800.3 Solanum lycopersicum HOM05D003750 ORTHO05D004337 2.5e-28 130.2 128 54.7
MELO3C014462.2 Cucumis melo HOM05D003750 ORTHO05D004337 3.3e-28 129.8 114 55.3
Potri.005G200900 Populus trichocarpa HOM05D003750 ORTHO05D004337 3.3e-28 129.8 148 49.3
vmacro12451 Vaccinium macrocarpon HOM05D003750 ORTHO05D004337 3.3e-28 129.8 195 47.7
Lj6g0002200 Lotus japonicus HOM05D003750 ORTHO05D004337 5.6e-28 129.0 121 52.1
Sopen12g006370 Solanum pennellii HOM05D003750 ORTHO05D004337 5.6e-28 129.0 125 56.0
FvH4_6g38100 Fragaria vesca HOM05D003750 ORTHO05D004337 7.3e-28 128.6 310 47.7
CAN.G1191.4 Capsicum annuum HOM05D003750 ORTHO05D004337 9.5e-28 128.3 117 57.3
CAN.G164.22 Capsicum annuum HOM05D003750 ORTHO05D004337 9.5e-28 128.3 246 46.3
Oeu040027.1 Olea europaea HOM05D003750 ORTHO05D004337 9.5e-28 128.3 119 58.0
PGSC0003DMG400021281 Solanum tuberosum HOM05D003750 ORTHO05D004337 9.5e-28 128.3 125 55.2
CSS0030446 Camellia sinensis var. sinensis HOM05D003750 ORTHO05D004337 1.2e-27 127.9 128 53.9
Lalb_Chr10g0106741 Lupinus albus HOM05D003750 ORTHO05D004337 1.2e-27 127.9 125 51.2
Nitab4.5_0001402g0030 Nicotiana tabacum HOM05D003750 ORTHO05D004337 1.2e-27 127.9 128 54.7
Manes.01G128300 Manihot esculenta HOM05D003750 ORTHO05D004337 2.1e-27 127.1 126 52.4
SGA_v2.0_scaffold70G23672 Striga asiatica HOM05D003750 ORTHO05D004337 2.1e-27 127.1 129 54.3
Atru.chr6.1510 Acer truncatum HOM05D003750 ORTHO05D004337 2.8e-27 126.7 125 52.0
MSTRG.15053 Avicennia marina HOM05D003750 ORTHO05D004337 2.8e-27 126.7 120 56.7
TPR.G16759 Trifolium pratense HOM05D003750 ORTHO05D004337 2.8e-27 126.7 112 56.2
Dinv12695 Davidia involucrata HOM05D003750 ORTHO05D004337 6.2e-27 125.6 121 54.5
Sabra05G0152900 Salix brachista HOM05D003750 ORTHO05D004337 8.0e-27 125.2 148 48.6
MBI07_g30204_MAGBIO Magnolia biondii HOM05D003750 ORTHO05D004337 1.1e-26 124.8 130 54.6
ECA246G0286 Erigeron canadensis HOM05D003750 ORTHO05D004337 1.4e-26 124.4 120 54.2
SalBow7G0202 Salvia bowleyana HOM05D003750 ORTHO05D004337 1.4e-26 124.4 130 51.5
DCAR_021309 Daucus carota HOM05D003750 ORTHO05D004337 1.8e-26 124.0 129 51.9
arahy.Tifrunner.gnm1.ann1.ZP8MLZ Arachis hypogaea HOM05D003750 ORTHO05D004337 2.3e-26 123.6 286 43.0
Aqoxy4G00176 Aquilegia oxysepala HOM05D003750 ORTHO05D004337 3.1e-26 123.2 121 54.5
SalBow7G1469 Salvia bowleyana HOM05D003750 ORTHO05D004337 4.0e-26 122.9 124 52.4
Migut.M00516 Erythranthe guttata HOM05D003750 ORTHO05D004337 6.8e-26 122.1 126 51.6
DCAR_009794 Daucus carota HOM05D003750 ORTHO05D004337 1.2e-25 121.3 125 51.2
Sabra02G0049300 Salix brachista HOM05D003750 ORTHO05D004337 1.5e-25 120.9 275 46.5
Nitab4.5_0002027g0180 Nicotiana tabacum HOM05D003750 ORTHO05D004337 2.0e-25 120.6 185 43.2
ATR0737G120 Amborella trichopoda HOM05D003750 ORTHO05D004337 2.6e-25 120.2 124 51.6
MSTRG.6755 Avicennia marina HOM05D003750 ORTHO05D004337 2.6e-25 120.2 128 53.1
CANSAT64G2056 Cannabis sativa HOM05D003750 ORTHO05D004337 5.8e-25 119.0 123 48.0
DCAR_016898 Daucus carota HOM05D003750 ORTHO05D004337 2.2e-24 117.1 124 51.6
Os01g0726700 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 2.2e-24 117.1 125 50.4
Sc15g0002430 Simmondsia chinensis HOM05D003750 ORTHO05D004337 3.7e-24 116.3 128 50.0
unitig_747.g21612 Utricularia gibba HOM05D003750 ORTHO05D004337 4.9e-24 115.9 293 37.9
Lsat_1_v5_gn_4_26620 Lactuca sativa HOM05D003750 ORTHO05D004337 6.4e-24 115.5 129 50.4
Peaxi162Scf00035g00302 Petunia axillaris HOM05D003750 ORTHO05D004337 6.4e-24 115.5 117 53.0
unitig_46.g18277 Utricularia gibba HOM05D003750 ORTHO05D004337 6.4e-24 115.5 244 44.3
unitig_899.g15337 Utricularia gibba HOM05D003750 ORTHO05D004337 6.4e-24 115.5 175 48.6
Zm00001eb154370 Zea mays HOM05D003750 ORTHO05D004337 6.4e-24 115.5 119 49.6
arahy.Tifrunner.gnm1.ann1.N94NTJ Arachis hypogaea HOM05D003750 ORTHO05D004337 8.3e-24 115.2 112 51.8
unitig_37.g12854 Utricularia gibba HOM05D003750 ORTHO05D004337 8.3e-24 115.2 112 52.7
ClCG02G018380 Citrullus lanatus HOM05D003750 ORTHO05D004337 1.1e-23 114.8 247 42.1
CDE02G2915 Ceratophyllum demersum HOM05D003750 ORTHO05D004337 3.2e-23 113.2 116 51.7
Sed0014259 Sechium edule HOM05D003750 ORTHO05D004337 3.2e-23 113.2 119 48.7
Migut.H02092 Erythranthe guttata HOM05D003750 ORTHO05D004337 7.0e-23 112.1 121 47.9
Sed0013297 Sechium edule HOM05D003750 ORTHO05D004337 1.2e-22 111.3 119 47.9
MELO3C019689.2 Cucumis melo HOM05D003750 ORTHO05D004337 2.7e-22 110.2 119 47.9
CDE09G1130 Ceratophyllum demersum HOM05D003750 ORTHO05D004337 3.5e-22 109.8 126 46.0
MBI06_g20684_MAGBIO Magnolia biondii HOM05D003750 ORTHO05D004337 4.6e-22 109.4 130 46.2
CsaV3_6G015810 Cucumis sativus L. HOM05D003750 ORTHO05D004337 3.0e-21 106.7 282 40.4
ECA234G0795 Erigeron canadensis HOM05D001021 ORTHO05D000894 2.5e-20 103.6 113 47.8
unitig_62.g23108 Utricularia gibba HOM05D003750 ORTHO05D004337 4.3e-20 102.8 124 46.8
Ca_06287_v3 Cicer arietinum L. HOM05D003750 ORTHO05D004337 1.2e-19 101.3 94 58.5
Glyma.02G280550 Glycine max HOM05D003750 ORTHO05D004337 1.2e-19 101.3 117 45.3
Ah.01g013400 Amaranthus hybridus HOM05D003750 ORTHO05D004337 2.1e-19 100.5 180 41.7
HanXRQChr17g0565411 Helianthus annuus HOM05D003750 ORTHO05D004337 3.6e-19 99.8 119 49.6
Hund08216 Selenicereus undatus HOM05D003750 ORTHO05D004337 3.6e-19 99.8 126 40.5
HanXRQChr17g0565481 Helianthus annuus HOM05D003750 ORTHO05D004337 4.7e-19 99.4 118 49.2
Ah.01g001950 Amaranthus hybridus HOM05D003750 ORTHO05D004337 6.2e-19 99.0 121 41.3
HanXRQChr01g0028591 Helianthus annuus HOM05D003750 ORTHO05D004337 8.1e-19 98.6 126 46.0
HanXRQChr17g0565191 Helianthus annuus HOM05D003750 ORTHO05D004337 1.1e-18 98.2 119 48.7
HanXRQChr17g0565441 Helianthus annuus HOM05D003750 ORTHO05D004337 1.1e-18 98.2 119 48.7
HanXRQChr17g0565471 Helianthus annuus HOM05D003750 ORTHO05D004337 1.1e-18 98.2 119 48.7
HPP92_009096 Vanilla planifolia HOM05D003750 ORTHO05D004337 1.1e-18 98.2 112 44.6
AUR62015148 Chenopodium quinoa HOM05D003750 ORTHO05D004337 1.4e-18 97.8 114 43.0
Eucgr.A01963 Eucalyptus grandis HOM05D003750 ORTHO05D004337 1.4e-18 97.8 126 45.2
EL10Ac9g22858 Beta vulgaris HOM05D003750 ORTHO05D004337 4.0e-18 96.3 112 44.6
unitig_85.g27387 Utricularia gibba HOM05D003750 ORTHO05D004337 5.2e-18 95.9 115 45.2
Zm00001eb239390 Zea mays HOM05D003750 ORTHO05D004337 1.5e-17 94.4 124 40.3
Zm00001eb120700 Zea mays HOM05D003750 ORTHO05D004337 6.4e-16 89.0 128 40.6
AUR62017604 Chenopodium quinoa HOM05D003750 ORTHO05D004337 6.0e-14 82.4 96 41.7
SEGI_25228 Sequoiadendron giganteum HOM05D003750 ORTHO05D004337 6.0e-14 82.4 163 36.8
Zm00001eb278420 Zea mays HOM05D003750 ORTHO05D004337 5.1e-13 79.3 124 41.1
Zm00001eb384740 Zea mays HOM05D003750 ORTHO05D004337 6.6e-13 79.0 113 43.4
Zm00001eb277660 Zea mays HOM05D003750 ORTHO05D004337 3.6e-11 73.2 115 41.7
Os02g0230300 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 1.8e-10 70.9 69 50.7
Os06g0553200 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 5.2e-10 69.3 118 39.8
Pp3c4_16960 Physcomitrium patens HOM05D003750 ORTHO05D004337 5.8e-09 65.9 123 34.1
Pp3c11_23110 Physcomitrium patens HOM05D003750 ORTHO05D004337 8.4e-08 62.0 114 30.7
SEGI_24140 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 1.9e-07 60.8 113 35.4
SEGI_36288 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 3.2e-07 60.1 115 34.8
TPR.G40574 Trifolium pratense HOM05D003750 ORTHO05D004337 3.5e-06 56.6 51 45.1


User provided reference genes

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