Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 5.7e-95 350.9 175 100.0
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 4.1e-77 291.6 175 81.7
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 6.9e-77 290.8 172 82.0
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 2.2e-75 285.8 175 80.6
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 2.2e-75 285.8 175 80.6
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 2.2e-75 285.8 175 80.0
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 6.5e-75 284.3 174 79.9
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 6.5e-75 284.3 175 80.6
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 1.1e-74 283.5 174 79.3
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 4.2e-74 281.6 172 78.5
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 7.2e-74 280.8 162 82.1
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 2.7e-73 278.9 174 78.7
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 6.1e-73 277.7 175 77.1
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.8e-72 276.2 174 76.4
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 1.8e-72 276.2 174 75.9
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.8e-72 276.2 172 78.5
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 2.3e-72 275.8 174 74.7
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 3.0e-72 275.4 174 76.4
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 5.1e-72 274.6 174 76.4
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 8.8e-72 273.9 174 75.9
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 8.8e-72 273.9 174 75.9
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 8.8e-72 273.9 175 77.7
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 1.5e-71 273.1 168 77.4
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 1.5e-71 273.1 169 76.9
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 2.0e-71 272.7 169 77.5
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 2.6e-71 272.3 174 73.6
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 3.3e-71 271.9 169 78.7
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 4.4e-71 271.6 171 74.9
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 4.4e-71 271.6 174 74.1
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 5.7e-71 271.2 169 76.3
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 7.4e-71 270.8 169 74.6
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 7.4e-71 270.8 175 74.9
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 9.7e-71 270.4 175 77.1
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 1.3e-70 270.0 169 74.6
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 1.3e-70 270.0 171 74.3
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 2.2e-70 269.2 174 74.7
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.2e-70 269.2 174 74.7
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 2.8e-70 268.9 169 74.0
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 3.7e-70 268.5 158 81.6
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 6.3e-70 267.7 169 74.6
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 6.3e-70 267.7 174 76.4
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 8.2e-70 267.3 169 74.6
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 1.1e-69 266.9 176 74.4
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 1.1e-69 266.9 175 74.3
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 1.8e-69 266.2 171 72.5
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 2.4e-69 265.8 174 73.0
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 3.1e-69 265.4 169 74.0
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 3.1e-69 265.4 169 74.0
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 3.1e-69 265.4 174 71.8
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 3.1e-69 265.4 174 75.3
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 4.1e-69 265.0 169 74.0
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 4.1e-69 265.0 169 74.0
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 4.1e-69 265.0 169 75.7
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 4.1e-69 265.0 174 73.0
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 4.1e-69 265.0 174 71.8
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 5.3e-69 264.6 171 73.1
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 5.3e-69 264.6 174 73.6
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 2.0e-68 262.7 174 72.4
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 3.5e-68 261.9 174 71.8
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 3.5e-68 261.9 174 73.6
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 4.5e-68 261.5 169 73.4
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 7.7e-68 260.8 174 72.4
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 1.0e-67 260.4 177 73.4
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 1.0e-67 260.4 175 70.3
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 1.3e-67 260.0 174 71.3
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 1.7e-67 259.6 169 73.4
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 2.2e-67 259.2 174 72.4
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 2.9e-67 258.8 175 72.0
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 5.0e-67 258.1 173 74.6
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 5.0e-67 258.1 169 75.1
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 6.5e-67 257.7 174 70.7
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 8.5e-67 257.3 169 74.6
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 8.5e-67 257.3 169 74.6
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 1.1e-66 256.9 167 71.3
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 1.5e-66 256.5 174 70.1
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 1.9e-66 256.1 169 72.2
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 3.2e-66 255.4 172 72.1
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 5.5e-66 254.6 174 71.8
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 5.5e-66 254.6 172 72.1
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 9.4e-66 253.8 168 73.2
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 2.7e-65 252.3 169 72.2
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 2.7e-65 252.3 171 69.6
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 4.7e-65 251.5 174 69.0
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 6.1e-65 251.1 174 67.8
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 8.0e-65 250.8 171 68.4
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 8.0e-65 250.8 174 69.0
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 8.0e-65 250.8 174 69.0
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.4e-64 250.0 174 67.8
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 1.4e-64 250.0 171 73.7
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 1.4e-64 250.0 166 71.7
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 2.3e-64 249.2 175 69.7
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 3.0e-64 248.8 172 71.5
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 3.9e-64 248.4 169 71.6
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 5.2e-64 248.1 175 69.1
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 6.7e-64 247.7 174 69.0
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 8.8e-64 247.3 169 70.4
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 1.5e-63 246.5 167 70.7
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 1.5e-63 246.5 167 71.9
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.5e-63 246.5 174 67.8
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 2.0e-63 246.1 174 69.5
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 2.0e-63 246.1 176 68.2
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 2.6e-63 245.7 175 68.6
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 5.7e-63 244.6 174 66.1
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 7.4e-63 244.2 175 70.3
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 1.3e-62 243.4 162 71.6
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 2.2e-62 242.7 167 70.1
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 4.8e-62 241.5 167 70.1
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 4.8e-62 241.5 174 66.1
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 8.2e-62 240.7 174 64.9
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 1.4e-61 240.0 171 66.7
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.8e-61 239.6 169 68.6
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 2.4e-61 239.2 167 69.5
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 3.1e-61 238.8 165 69.1
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 3.1e-61 238.8 162 68.5
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 4.1e-61 238.4 167 70.7
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 4.1e-61 238.4 169 68.0
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 9.1e-61 237.3 174 66.7
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 1.2e-60 236.9 174 64.9
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 1.6e-60 236.5 174 64.9
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 4.5e-60 235.0 174 61.5
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 6.5e-59 231.1 175 66.3
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 1.9e-58 229.6 174 63.2
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 3.2e-58 228.8 174 66.7
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 3.2e-58 228.8 170 64.7
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 5.5e-58 228.0 163 64.4
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 2.7e-57 225.7 178 64.6
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 2.7e-57 225.7 174 62.6
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 8.0e-57 224.2 163 66.9
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 1.8e-56 223.0 132 76.5
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 3.0e-56 222.2 163 63.8
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 3.0e-56 222.2 171 67.3
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.0e-56 222.2 171 67.3
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.2e-55 220.3 171 66.7
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.4e-55 218.4 171 66.1
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 7.5e-55 217.6 176 64.2
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 2.2e-54 216.1 135 73.3
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 7.0e-53 211.1 166 60.8
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 9.1e-53 210.7 165 62.4
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.2e-52 210.3 185 61.6
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 5.9e-52 208.0 157 60.5
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.0e-51 207.2 156 63.5
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 1.3e-51 206.8 155 61.9
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 8.5e-51 204.1 137 75.9
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 9.4e-50 200.7 165 57.6
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.6e-49 199.9 157 59.2
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 3.6e-49 198.7 174 56.9
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 4.7e-49 198.4 166 62.0
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 1.4e-48 196.8 161 61.5
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 5.2e-48 194.9 139 66.9
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 5.7e-47 191.4 129 74.4
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 5.7e-47 191.4 136 72.8
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 1.4e-45 186.8 164 59.8
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 4.1e-45 185.3 163 61.3
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 9.1e-45 184.1 129 69.8
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 1.0e-43 180.6 157 52.9
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 3.8e-43 178.7 166 54.8
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 9.5e-42 174.1 172 54.1
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 2.8e-41 172.6 143 62.2
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 2.8e-41 172.6 129 65.9
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.3e-40 169.5 181 54.7
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.2e-39 167.2 181 54.1
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 3.4e-39 165.6 181 51.9
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 7.0e-37 157.9 116 69.8
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 5.9e-36 154.8 90 83.3
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 3.3e-34 149.1 99 72.7
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 4.9e-30 135.2 93 67.7
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.4e-29 132.9 150 43.3
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 2.7e-28 129.4 94 63.8
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 3.5e-28 129.0 174 44.8
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 2.5e-26 122.9 91 61.5
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 5.2e-24 115.2 73 71.2
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.5e-18 97.1 79 58.2
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 1.3e-11 73.9 118 39.8
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 5.1e-11 72.0 180 29.4
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.9e-10 70.1 53 64.2
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 2.8e-09 66.2 77 49.4
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 4.7e-09 65.5 69 50.7
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 6.8e-08 61.6 64 43.8
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 8.9e-08 61.2 37 73.0
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.2e-07 60.8 37 73.0
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 3.4e-07 59.3 177 27.7
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 4.4e-07 58.9 57 47.4
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 9.9e-07 57.8 39 59.0


User provided reference genes

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