Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G0461 Papaver somniferum HOM05D005552 ORTHO05D006743 0.0e+00 1125.2 564 100.0
PSO675G7200 Papaver somniferum HOM05D005552 ORTHO05D006743 0.0e+00 1104.4 564 97.7
Aqoxy6G00889 Aquilegia oxysepala HOM05D005552 ORTHO05D006743 7.9e-223 777.3 567 68.4
GSVIVG01003549001 Vitis vinifera HOM05D005552 ORTHO05D006743 3.9e-222 775.0 577 66.2
Dinv39890 Davidia involucrata HOM05D005552 ORTHO05D006743 7.6e-218 760.8 577 66.6
COL.COLO4_11363 Corchorus olitorius HOM05D005552 ORTHO05D006743 2.2e-212 742.7 576 63.9
vmacro21371 Vaccinium macrocarpon HOM05D005552 ORTHO05D006743 8.2e-212 740.7 576 63.9
CiPaw.01G023200 Carya illinoinensis HOM05D005552 ORTHO05D006743 9.0e-211 737.3 577 64.5
Gohir.D11G196500 Gossypium hirsutum HOM05D005552 ORTHO05D006743 9.0e-211 737.3 576 63.0
Cfa003976 Carpinus fangiana HOM05D005552 ORTHO05D006743 4.5e-210 734.9 577 64.3
Thecc.01G050800 Theobroma cacao HOM05D005552 ORTHO05D006743 7.6e-210 734.2 576 63.4
Gorai.007G210400 Gossypium raimondii HOM05D005552 ORTHO05D006743 1.7e-209 733.0 576 62.7
Actinidia12065 Actinidia chinensis HOM05D005552 ORTHO05D006743 5.0e-209 731.5 577 63.8
Duzib264G1173 Durio zibethinus HOM05D005552 ORTHO05D006743 9.3e-208 727.2 576 63.9
Potri.001G361900 Populus trichocarpa HOM05D005552 ORTHO05D006743 2.7e-207 725.7 579 64.1
MD15G1279300 Malus domestica HOM05D005552 ORTHO05D006743 4.6e-207 724.9 578 63.1
CANSAT64G0631 Cannabis sativa HOM05D005552 ORTHO05D006743 7.9e-207 724.2 574 62.9
Rhsim01G0119100 Rhododendron simsii HOM05D005552 ORTHO05D006743 1.8e-206 723.0 577 62.9
FAN26G2590 Fragaria x ananassa HOM05D005552 ORTHO05D006743 8.8e-206 720.7 578 62.1
Cc02_g34610 Coffea canephora HOM05D005552 ORTHO05D006743 1.5e-205 719.9 576 62.3
QL06p042750 Quercus lobata HOM05D005552 ORTHO05D006743 2.5e-205 719.2 576 62.2
FAN28G0665 Fragaria x ananassa HOM05D005552 ORTHO05D006743 5.7e-205 718.0 578 61.9
Ciclev10025258m.g Citrus clementina HOM05D005552 ORTHO05D006743 9.7e-205 717.2 577 63.3
Oeu020899.1 Olea europaea HOM05D005552 ORTHO05D006743 2.2e-204 716.1 575 62.4
Haze_15444 Corylus avellana HOM05D005552 ORTHO05D006743 2.8e-204 715.7 588 61.7
Prupe.7G138000 Prunus persica HOM05D005552 ORTHO05D006743 6.3e-204 714.5 578 62.3
CSS0032711 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 8.2e-204 714.1 576 63.5
FvH4_1g15480 Fragaria vesca HOM05D005552 ORTHO05D006743 8.2e-204 714.1 578 61.6
FAN19G0212 Fragaria x ananassa HOM05D005552 ORTHO05D006743 3.1e-203 712.2 578 61.2
TWI09G0520 Tripterygium wilfordii HOM05D005552 ORTHO05D006743 3.1e-203 712.2 576 63.0
RcHm_v2.0_Chr2g0104711 Rosa chinensis HOM05D005552 ORTHO05D006743 6.9e-203 711.1 578 61.6
AUR62003843 Chenopodium quinoa HOM05D005552 ORTHO05D006743 2.0e-202 709.5 573 61.6
Lj4C139G4 Lonicera japonica HOM05D005552 ORTHO05D006743 5.9e-202 708.0 575 62.4
Cpa.g.sc6.396 Carica papaya HOM05D005552 ORTHO05D006743 3.8e-201 705.3 572 62.6
AUR62001963 Chenopodium quinoa HOM05D005552 ORTHO05D006743 2.3e-198 696.0 573 61.1
Sopen01g043680 Solanum pennellii HOM05D005552 ORTHO05D006743 8.8e-198 694.1 576 60.1
MD02G1166800 Malus domestica HOM05D005552 ORTHO05D006743 4.4e-197 691.8 571 60.1
THA.LOC104807572 Tarenaya hassleriana HOM05D005552 ORTHO05D006743 4.4e-197 691.8 572 60.5
Sed0018600 Sechium edule HOM05D005552 ORTHO05D006743 1.3e-196 690.3 573 60.9
Sc16g0001610 Simmondsia chinensis HOM05D005552 ORTHO05D006743 2.2e-196 689.5 574 59.6
Lsat_1_v5_gn_4_168700 Lactuca sativa HOM05D005552 ORTHO05D006743 1.1e-195 687.2 573 58.8
VMungo1215G1500 Vigna mungo HOM05D005552 ORTHO05D006743 1.8e-195 686.4 574 60.3
Glyma.01G183800 Glycine max HOM05D005552 ORTHO05D006743 2.4e-195 686.0 595 59.2
Solyc01g100190.4 Solanum lycopersicum HOM05D005552 ORTHO05D006743 3.1e-195 685.6 577 60.0
PGSC0003DMG400024733 Solanum tuberosum HOM05D005552 ORTHO05D006743 3.1e-195 685.6 577 60.0
Eucgr.I00976 Eucalyptus grandis HOM05D005552 ORTHO05D006743 5.3e-195 684.9 569 60.3
ClCG01G016650 Citrullus lanatus HOM05D005552 ORTHO05D006743 6.9e-195 684.5 570 60.5
Glyma.11G058500 Glycine max HOM05D005552 ORTHO05D006743 6.9e-195 684.5 576 60.8
Lalb_Chr05g0213171 Lupinus albus HOM05D005552 ORTHO05D006743 1.5e-194 683.3 575 60.3
PGR119G0642 Punica granatum HOM05D005552 ORTHO05D006743 1.5e-194 683.3 572 59.3
Hund16313 Selenicereus undatus HOM05D005552 ORTHO05D006743 2.6e-194 682.6 574 59.8
ECA232G0422 Erigeron canadensis HOM05D005552 ORTHO05D006743 3.4e-194 682.2 577 58.9
arahy.Tifrunner.gnm1.ann1.21BGDZ Arachis hypogaea HOM05D005552 ORTHO05D006743 5.9e-194 681.4 605 57.5
Ca_24792_v3 Cicer arietinum L. HOM05D005552 ORTHO05D006743 5.9e-194 681.4 575 59.0
MELO3C007542.2 Cucumis melo HOM05D005552 ORTHO05D006743 5.9e-194 681.4 565 60.2
Psat2g165040 Pisum sativum HOM05D005552 ORTHO05D006743 1.0e-193 680.6 576 60.2
AT4G37190 Arabidopsis thaliana HOM05D005552 ORTHO05D006743 2.9e-193 679.1 569 60.8
MSTRG.5133 Avicennia marina HOM05D005552 ORTHO05D006743 2.9e-193 679.1 576 60.1
CAN.G1273.15 Capsicum annuum HOM05D005552 ORTHO05D006743 2.9e-193 679.1 578 60.2
AL7G13990 Arabidopsis lyrata HOM05D005552 ORTHO05D006743 1.4e-192 676.8 569 60.8
HanXRQChr14g0430701 Helianthus annuus HOM05D005552 ORTHO05D006743 1.4e-192 676.8 568 59.5
CARHR245320 Cardamine hirsuta HOM05D005552 ORTHO05D006743 4.2e-192 675.2 566 61.3
Sp7g34600 Schrenkiella parvula HOM05D005552 ORTHO05D006743 1.2e-191 673.7 569 60.3
Nitab4.5_0002715g0120 Nicotiana tabacum HOM05D005552 ORTHO05D006743 6.1e-191 671.4 606 58.9
TPR.G11337 Trifolium pratense HOM05D005552 ORTHO05D006743 8.0e-191 671.0 571 59.2
Carub.0007s0338 Capsella rubella HOM05D005552 ORTHO05D006743 2.3e-190 669.5 567 60.7
Medtr5g017970 Medicago truncatula HOM05D005552 ORTHO05D006743 3.0e-190 669.1 572 59.8
Lj2g0010083 Lotus japonicus HOM05D005552 ORTHO05D006743 2.6e-186 656.0 576 58.3
Lj6g0016933 Lotus japonicus HOM05D005552 ORTHO05D006743 2.6e-186 656.0 576 58.7
CDE04G2042 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 1.0e-185 654.1 546 60.6
Aa31LG6G13810 Aethionema arabicum HOM05D005552 ORTHO05D006743 2.1e-183 646.4 568 57.6
arahy.Tifrunner.gnm1.ann1.A2BBUY Arachis hypogaea HOM05D005552 ORTHO05D006743 2.7e-183 646.0 576 57.8
Os03g0240900 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 3.6e-183 645.6 573 56.9
ATR0767G265 Amborella trichopoda HOM05D005552 ORTHO05D006743 1.5e-181 640.2 552 58.2
Thhalv10024834m.g Eutrema salsugineum HOM05D005552 ORTHO05D006743 2.6e-181 639.4 569 58.0
A03p64710 Brassica napus HOM05D005552 ORTHO05D006743 7.0e-179 631.3 566 58.3
BraA03t15535Z Brassica rapa HOM05D005552 ORTHO05D006743 7.0e-179 631.3 566 58.3
C07p62120 Brassica napus HOM05D005552 ORTHO05D006743 2.7e-178 629.4 565 58.4
BolC7t46629H Brassica oleracea HOM05D005552 ORTHO05D006743 2.7e-178 629.4 565 58.4
BcaNung04273 Brassica carinata HOM05D005552 ORTHO05D006743 5.9e-178 628.2 565 58.2
SGA_v2.0_scaffold36G14364 Striga asiatica HOM05D005552 ORTHO05D006743 3.8e-177 625.5 645 51.9
Hma1.2p1_0873F.1_g231280 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 2.5e-176 622.9 510 61.8
HPP92_017765 Vanilla planifolia HOM05D005552 ORTHO05D006743 1.6e-175 620.2 577 54.2
Zm00001eb030410 Zea mays HOM05D005552 ORTHO05D006743 3.0e-174 615.9 569 54.3
Nitab4.5_0000368g0430 Nicotiana tabacum HOM05D005552 ORTHO05D006743 2.6e-173 612.8 605 54.9
CsaV3_6G043060 Cucumis sativus L. HOM05D005552 ORTHO05D006743 9.1e-171 604.4 528 59.5
Phvul.002G021300 Phaseolus vulgaris HOM05D005552 ORTHO05D006743 1.5e-168 597.0 518 58.5
Manes.16G089500 Manihot esculenta HOM05D005552 ORTHO05D006743 9.5e-168 594.3 496 61.1
BcaNung03946 Brassica carinata HOM05D005552 ORTHO05D006743 1.0e-166 590.9 538 57.1
TAR628G0695 Trochodendron aralioides HOM05D005552 ORTHO05D006743 1.8e-166 590.1 430 69.5
Peaxi162Scf00073g00015 Petunia axillaris HOM05D005552 ORTHO05D006743 1.7e-161 573.5 504 59.9
DCAR_010923 Daucus carota HOM05D005552 ORTHO05D006743 1.0e-158 564.3 682 46.5
Nn6g32078 Nelumbo nucifera HOM05D005552 ORTHO05D006743 8.3e-156 554.7 423 66.4
Sopen01g043710 Solanum pennellii HOM05D005552 ORTHO05D006743 8.3e-156 554.7 476 58.6
Hma1.2p1_0873F.1_g231290 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 2.0e-154 550.1 438 62.1
SEGI_18564 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 6.6e-145 518.5 553 48.6
Oeu035482.1 Olea europaea HOM05D005552 ORTHO05D006743 6.2e-143 511.9 395 64.8
TAR376G0305 Trochodendron aralioides HOM05D005552 ORTHO05D006743 1.1e-142 511.1 473 59.2
Os12g0586400 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 4.0e-142 509.2 573 49.2
Gohir.A11G189700 Gossypium hirsutum HOM05D005552 ORTHO05D006743 9.9e-141 504.6 390 63.6
FvH4_5g33502 Fragaria vesca HOM05D005552 ORTHO05D006743 6.6e-137 491.9 486 54.9
CDE06G0261 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 9.9e-133 478.0 456 55.0
FAN18G3771 Fragaria x ananassa HOM05D005552 ORTHO05D006743 1.5e-120 437.6 369 61.2
Mapoly0024s0139 Marchantia polymorpha HOM05D005552 ORTHO05D006743 3.6e-119 433.0 605 40.7
Atru.chr3.424 Acer truncatum HOM05D005552 ORTHO05D006743 1.3e-111 407.9 357 58.0
SMO358G0218 Selaginella moellendorffii HOM05D005552 ORTHO05D006743 4.0e-110 402.9 553 42.3
Pp3c2_14950 Physcomitrium patens HOM05D005552 ORTHO05D006743 4.2e-107 392.9 601 39.1
HanXRQChr04g0119851 Helianthus annuus HOM05D005552 ORTHO05D006743 4.3e-104 382.9 286 64.3
FAN08G3227 Fragaria x ananassa HOM05D005552 ORTHO05D006743 3.2e-99 366.7 457 47.0
unitig_26.g9473 Utricularia gibba HOM05D005552 ORTHO05D006743 2.0e-69 267.7 247 55.5
Atru.chr2.470 Acer truncatum HOM05D005552 ORTHO05D006743 1.9e-59 234.6 373 38.1
unitig_26.g9472 Utricularia gibba HOM05D005552 ORTHO05D006743 3.7e-55 220.3 279 45.5
HanXRQChr04g0119841 Helianthus annuus HOM05D005552 ORTHO05D006743 2.0e-53 214.5 211 52.1
Atru.chr3.423 Acer truncatum HOM05D005552 ORTHO05D006743 1.1e-51 208.8 161 67.7
CBR_g38209 Chara braunii HOM05D005552 ORTHO05D006743 7.2e-51 206.1 534 30.0
SHI23011 Sapria himalayana HOM05D005552 ORTHO05D006743 1.1e-35 155.6 154 51.3
Psat4g201960 Pisum sativum HOM05D005552 ORTHO05D006743 4.0e-33 147.1 135 57.0
arahy.Tifrunner.gnm1.ann1.ENA0P5 Arachis hypogaea HOM05D005552 ORTHO05D006743 8.3e-31 139.4 100 64.0
Cre01.g043700 Chlamydomonas reinhardtii HOM05D005552 ORTHO05D006743 4.3e-27 127.1 613 22.5
MCO05G662 Micromonas commoda HOM05D005552 ORTHO05D006743 4.3e-27 127.1 460 24.6
arahy.Tifrunner.gnm1.ann1.S73BBB Arachis hypogaea HOM05D005552 ORTHO05D006743 5.6e-27 126.7 213 38.5
Psat1g136760 Pisum sativum HOM05D005552 ORTHO05D006743 3.6e-26 124.0 117 55.6
SHI23015 Sapria himalayana HOM05D005552 ORTHO05D006743 3.6e-26 124.0 122 51.6
Peaxi162Scf00073g00115 Petunia axillaris HOM05D005552 ORTHO05D006743 1.1e-25 122.5 74 70.3
Cfa026632 Carpinus fangiana HOM05D005552 ORTHO05D006743 6.8e-25 119.8 370 23.5
C01p02170 Brassica napus HOM05D005552 ORTHO05D006743 3.3e-19 100.9 116 44.0
BolC1t00209H Brassica oleracea HOM05D005552 ORTHO05D006743 3.3e-19 100.9 116 44.0
TAR376G0458 Trochodendron aralioides HOM05D005552 ORTHO05D006743 4.3e-19 100.5 73 64.4
Psat5g241560 Pisum sativum HOM05D005552 ORTHO05D006743 4.4e-16 90.5 90 52.2
CSS0040680 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 9.3e-14 82.8 81 50.6
Cpa.g.sc6.394 Carica papaya HOM05D005552 ORTHO05D006743 2.3e-12 78.2 289 25.6
CSS0023439 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 3.9e-12 77.4 81 49.4
SHI23016 Sapria himalayana HOM05D000105 ORTHO05D000023 5.1e-12 77.0 56 57.1
Ah.11g041060 Amaranthus hybridus HOM05D005552 ORTHO05D006743 7.3e-11 73.2 52 61.5
FvH4_5g33501 Fragaria vesca HOM05D005552 ORTHO05D006743 6.2e-10 70.1 45 68.9
SEGI_06310 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 6.9e-09 66.6 51 54.9
SHI23013 Sapria himalayana HOM05D001839 ORTHO05D001867 5.4e-06 57.0 70 45.7


User provided reference genes

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