Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 2.5e-51 205.3 112 100.0
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 1.0e-20 103.6 109 56.9
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 1.0e-20 103.6 113 55.8
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 1.9e-19 99.4 113 57.5
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 2.5e-19 99.0 113 57.5
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 7.2e-19 97.4 112 54.5
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 9.4e-19 97.1 113 56.6
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 9.4e-19 97.1 109 51.4
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 2.1e-18 95.9 112 51.8
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 2.1e-18 95.9 110 52.7
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 8.0e-18 94.0 113 53.1
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 1.4e-17 93.2 109 51.4
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 1.8e-17 92.8 112 51.8
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 5.2e-17 91.3 109 51.4
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 2.6e-16 89.0 113 52.2
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 3.3e-16 88.6 114 51.8
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 3.3e-16 88.6 111 47.7
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 3.3e-16 88.6 109 50.5
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 4.4e-16 88.2 109 50.5
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 5.7e-16 87.8 109 49.5
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 5.7e-16 87.8 110 50.9
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 5.7e-16 87.8 113 50.4
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.3e-15 86.7 115 51.3
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.3e-15 86.7 115 51.3
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 1.3e-15 86.7 114 50.0
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 1.7e-15 86.3 110 51.8
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 2.2e-15 85.9 113 49.6
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 2.8e-15 85.5 111 49.5
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 2.8e-15 85.5 111 49.5
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 2.8e-15 85.5 114 50.9
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 2.8e-15 85.5 113 47.8
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 3.7e-15 85.1 112 49.1
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 4.8e-15 84.7 112 49.1
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 8.2e-15 84.0 112 50.0
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 8.2e-15 84.0 110 49.1
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 8.2e-15 84.0 110 46.4
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 1.1e-14 83.6 111 48.6
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 1.4e-14 83.2 111 46.8
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 1.8e-14 82.8 113 50.4
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 1.8e-14 82.8 110 50.0
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 4.1e-14 81.6 112 47.3
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 4.1e-14 81.6 116 49.1
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 4.1e-14 81.6 117 47.0
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 5.3e-14 81.3 111 47.7
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 5.3e-14 81.3 117 46.2
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 7.0e-14 80.9 115 50.4
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 7.0e-14 80.9 111 49.5
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 7.0e-14 80.9 111 47.7
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 7.0e-14 80.9 112 50.0
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 9.1e-14 80.5 110 49.1
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 1.2e-13 80.1 118 49.2
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 1.2e-13 80.1 110 48.2
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 1.2e-13 80.1 113 47.8
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 1.6e-13 79.7 114 48.2
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 1.6e-13 79.7 114 46.5
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 1.6e-13 79.7 110 47.3
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 1.6e-13 79.7 113 46.9
Dinv09347 Davidia involucrata HOM05D004268 ORTHO05D004958 2.0e-13 79.3 99 48.5
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 2.7e-13 79.0 117 46.2
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 2.7e-13 79.0 112 44.6
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 3.5e-13 78.6 113 48.7
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 4.5e-13 78.2 110 46.4
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 1.0e-12 77.0 115 47.8
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 1.0e-12 77.0 113 46.0
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 1.0e-12 77.0 115 46.1
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 1.3e-12 76.6 111 44.1
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 1.3e-12 76.6 112 45.5
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 1.3e-12 76.6 116 45.7
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 1.3e-12 76.6 110 47.3
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 1.7e-12 76.3 114 50.9
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 3.8e-12 75.1 114 46.5
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 6.5e-12 74.3 112 47.3
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 6.5e-12 74.3 120 47.5
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 8.5e-12 73.9 110 43.6
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 1.1e-11 73.6 115 44.3
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 1.1e-11 73.6 115 44.3
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 1.1e-11 73.6 115 44.3
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 1.9e-11 72.8 117 47.0
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 2.5e-11 72.4 116 44.8
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 3.2e-11 72.0 116 44.8
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 3.2e-11 72.0 115 43.5
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 4.2e-11 71.6 115 43.5
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 4.2e-11 71.6 115 47.0
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 4.2e-11 71.6 112 42.9
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 5.5e-11 71.2 112 42.0
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 7.2e-11 70.9 113 45.1
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 9.4e-11 70.5 113 43.4
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 9.4e-11 70.5 113 43.4
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 9.4e-11 70.5 113 43.4
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 9.4e-11 70.5 112 42.9
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 9.4e-11 70.5 91 44.0
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 9.4e-11 70.5 113 45.1
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 1.2e-10 70.1 113 43.4
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 1.2e-10 70.1 114 42.1
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 2.7e-10 68.9 112 42.0
CAN.G821.8 Capsicum annuum HOM05D004268 ORTHO05D004958 3.6e-10 68.6 99 47.5
Nn7g36237 Nelumbo nucifera HOM05D004268 ORTHO05D004958 3.6e-10 68.6 110 45.5
Nn7g36238 Nelumbo nucifera HOM05D004268 ORTHO05D004958 3.6e-10 68.6 110 45.5
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 3.6e-10 68.6 115 43.5
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 4.7e-10 68.2 114 46.5
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 6.1e-10 67.8 113 42.5
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 1.4e-09 66.6 115 43.5
Aqoxy1G00277 Aquilegia oxysepala HOM05D004268 ORTHO05D004958 1.8e-09 66.2 37 81.1
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 2.3e-09 65.9 112 44.6
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 2.3e-09 65.9 112 42.0
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 2.3e-09 65.9 114 40.4
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 2.3e-09 65.9 112 42.0
TAR623G0940 Trochodendron aralioides HOM05D004268 ORTHO05D004958 2.3e-09 65.9 110 42.7
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 3.0e-09 65.5 113 41.6
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 3.0e-09 65.5 114 41.2
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 3.0e-09 65.5 115 38.3
Lalb_Chr01g0000351 Lupinus albus HOM05D004268 ORTHO05D004958 3.0e-09 65.5 37 81.1
MD11G1191900 Malus domestica HOM05D004268 ORTHO05D004958 3.0e-09 65.5 115 41.7
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 3.0e-09 65.5 112 43.8
Ah.10g038780 Amaranthus hybridus HOM05D000040 ORTHO05D000267 4.0e-09 65.1 109 44.0
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 5.2e-09 64.7 110 42.7
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 5.2e-09 64.7 110 42.7
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 5.2e-09 64.7 118 44.1
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 6.8e-09 64.3 110 42.7
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 6.8e-09 64.3 110 42.7
Migut.N02326 Erythranthe guttata HOM05D004268 ORTHO05D004958 8.8e-09 63.9 38 78.9
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 8.8e-09 63.9 118 40.7
SEGI_11181 Sequoiadendron giganteum HOM05D004268 ORTHO05D004958 8.8e-09 63.9 128 40.6
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 8.8e-09 63.9 112 43.8
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 2.6e-08 62.4 113 39.8
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 2.6e-08 62.4 111 42.3
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 4.4e-08 61.6 112 43.8
ATR0763G199 Amborella trichopoda HOM05D004268 ORTHO05D004958 5.7e-08 61.2 118 43.2
Oeu033136.1 Olea europaea HOM05D004268 ORTHO05D004958 5.7e-08 61.2 40 77.5
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 2.2e-07 59.3 112 43.8
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 3.7e-07 58.5 57 59.6
PGSC0003DMG400010498 Solanum tuberosum HOM05D004268 ORTHO05D004958 3.7e-07 58.5 95 45.3
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 4.8e-07 58.2 113 37.2
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 4.8e-07 58.2 113 42.5
ECA233G4176 Erigeron canadensis HOM05D004268 ORTHO05D004958 6.3e-07 57.8 120 40.0
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 1.8e-06 56.2 113 37.2
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 1.8e-06 56.2 113 37.2
Hma1.2p1_0495F.1_g165730 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 1.8e-06 56.2 37 67.6
Mapoly0111s0017 Marchantia polymorpha HOM05D024154 ORTHO05D023530 2.4e-06 55.8 62 51.6
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 3.1e-06 55.5 58 58.6
Rhsim01G0129200 Rhododendron simsii HOM05D000074 ORTHO05D004958 4.1e-06 55.1 101 39.6
Sopen01g004050 Solanum pennellii HOM05D004268 ORTHO05D004958 4.1e-06 55.1 113 40.7
Solyc01g008510.3 Solanum lycopersicum HOM05D004268 ORTHO05D004958 5.4e-06 54.7 113 39.8
PGSC0003DMG400019098 Solanum tuberosum HOM05D004268 ORTHO05D004958 5.4e-06 54.7 88 45.5
Migut.D00609 Erythranthe guttata HOM05D004268 ORTHO05D004958 7.0e-06 54.3 39 66.7
Nitab4.5_0002741g0110 Nicotiana tabacum HOM05D004268 ORTHO05D004958 9.1e-06 53.9 39 66.7


User provided reference genes

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