Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G0178 Papaver somniferum HOM05D006820 ORTHO05D008526 1.8e-125 452.6 226 100.0
PSO675G9330 Papaver somniferum HOM05D006820 ORTHO05D008526 1.2e-121 439.9 226 97.3
PSO017G7138 Papaver somniferum HOM05D006820 ORTHO05D008526 4.7e-110 401.4 226 88.1
Nn6g31730 Nelumbo nucifera HOM05D006820 ORTHO05D008526 1.9e-90 336.3 229 70.3
TAR625G0986 Trochodendron aralioides HOM05D006820 ORTHO05D008526 1.6e-89 333.2 229 71.2
Lj9A405G64 Lonicera japonica HOM05D006820 ORTHO05D008526 2.7e-89 332.4 229 71.6
CSS0042496 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 3.5e-89 332.0 229 71.6
Lsat_1_v5_gn_8_120400 Lactuca sativa HOM05D006820 ORTHO05D008526 6.6e-88 327.8 224 71.4
Manes.04G064800 Manihot esculenta HOM05D006820 ORTHO05D008526 1.2e-86 323.6 229 69.9
Atru.chr5.3527 Acer truncatum HOM05D006820 ORTHO05D008526 2.8e-86 322.4 223 71.3
Ciclev10029216m.g Citrus clementina HOM05D006820 ORTHO05D008526 2.8e-86 322.4 228 72.8
vmacro17294 Vaccinium macrocarpon HOM05D006820 ORTHO05D008526 1.8e-85 319.7 229 69.0
Actinidia32013 Actinidia chinensis HOM05D006820 ORTHO05D008526 2.4e-85 319.3 229 69.9
Migut.B00016 Erythranthe guttata HOM05D006820 ORTHO05D008526 4.0e-85 318.5 226 69.5
GSVIVG01023895001 Vitis vinifera HOM05D006820 ORTHO05D008526 5.2e-85 318.2 229 69.4
Aqoxy6G01707 Aquilegia oxysepala HOM05D006820 ORTHO05D008526 6.8e-85 317.8 222 72.1
Nitab4.5_0011212g0060 Nicotiana tabacum HOM05D006820 ORTHO05D008526 2.0e-84 316.2 224 67.9
Peaxi162Scf00362g00246 Petunia axillaris HOM05D006820 ORTHO05D008526 2.0e-84 316.2 225 69.8
PGSC0003DMG400014660 Solanum tuberosum HOM05D006820 ORTHO05D008526 2.0e-84 316.2 225 68.0
Gorai.008G040700 Gossypium raimondii HOM05D006820 ORTHO05D008526 2.6e-84 315.8 226 69.5
HanXRQChr14g0459061 Helianthus annuus HOM05D006820 ORTHO05D008526 4.4e-84 315.1 229 69.4
CAN.G1725.10 Capsicum annuum HOM05D006820 ORTHO05D008526 5.8e-84 314.7 224 68.8
Potri.009G165400 Populus trichocarpa HOM05D006820 ORTHO05D008526 7.6e-84 314.3 225 69.8
QL11p053925 Quercus lobata HOM05D006820 ORTHO05D008526 9.9e-84 313.9 244 66.8
CiPaw.06G118200 Carya illinoinensis HOM05D006820 ORTHO05D008526 1.7e-83 313.2 229 67.7
Duzib132G0878 Durio zibethinus HOM05D006820 ORTHO05D008526 1.7e-83 313.2 229 68.6
Solyc01g112160.4 Solanum lycopersicum HOM05D006820 ORTHO05D008526 2.2e-83 312.8 229 66.4
Thecc.02G045600 Theobroma cacao HOM05D006820 ORTHO05D008526 2.2e-83 312.8 225 68.4
FvH4_2g16540 Fragaria vesca HOM05D006820 ORTHO05D008526 2.9e-83 312.4 225 70.2
Sopen01g054210 Solanum pennellii HOM05D006820 ORTHO05D008526 4.9e-83 311.6 229 65.9
PGR142G1762 Punica granatum HOM05D006820 ORTHO05D008526 6.4e-83 311.2 225 69.8
AUR62012929 Chenopodium quinoa HOM05D006820 ORTHO05D008526 1.4e-82 310.1 229 67.7
MD10G1138800 Malus domestica HOM05D006820 ORTHO05D008526 1.9e-82 309.7 225 67.1
Ah.01g007660 Amaranthus hybridus HOM05D006820 ORTHO05D008526 3.2e-82 308.9 221 67.0
FAN24G1561 Fragaria x ananassa HOM05D006820 ORTHO05D008526 3.2e-82 308.9 223 70.0
SGA_v2.0_scaffold58G20319 Striga asiatica HOM05D006820 ORTHO05D008526 9.3e-82 307.4 233 66.1
CANSAT25G2916 Cannabis sativa HOM05D006820 ORTHO05D008526 2.1e-81 306.2 225 66.2
FAN15G1990 Fragaria x ananassa HOM05D006820 ORTHO05D008526 2.1e-81 306.2 225 68.4
ECA233G1752 Erigeron canadensis HOM05D006820 ORTHO05D008526 2.7e-81 305.8 209 71.8
AUR62011713 Chenopodium quinoa HOM05D006820 ORTHO05D008526 6.0e-81 304.7 228 67.1
DCAR_015665 Daucus carota HOM05D006820 ORTHO05D008526 6.0e-81 304.7 224 65.6
Eucgr.I01511 Eucalyptus grandis HOM05D006820 ORTHO05D008526 6.0e-81 304.7 222 68.5
PSO170G2156 Papaver somniferum HOM05D006820 ORTHO05D008526 6.0e-81 304.7 170 86.5
Aa31LG6G16790 Aethionema arabicum HOM05D006820 ORTHO05D008526 1.0e-80 303.9 226 64.2
Thhalv10004876m.g Eutrema salsugineum HOM05D006820 ORTHO05D008526 1.3e-80 303.5 222 66.7
BcaC01g00221 Brassica carinata HOM05D006820 ORTHO05D008526 1.7e-80 303.1 224 67.0
FAN27G3410 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.7e-80 303.1 225 68.9
Prupe.8G177600 Prunus persica HOM05D006820 ORTHO05D008526 1.7e-80 303.1 225 67.6
BcaC01g00229 Brassica carinata HOM05D006820 ORTHO05D008526 2.3e-80 302.8 225 68.0
Sp7g37400 Schrenkiella parvula HOM05D006820 ORTHO05D008526 2.3e-80 302.8 222 66.7
BraA08t34377Z Brassica rapa HOM05D000807 ORTHO05D000662 3.0e-80 302.4 223 67.3
Phvul.008G291600 Phaseolus vulgaris HOM05D006820 ORTHO05D008526 5.1e-80 301.6 225 67.1
unitig_0.g2740 Utricularia gibba HOM05D006820 ORTHO05D008526 5.1e-80 301.6 230 66.1
BolC3t19961H Brassica oleracea HOM05D000807 ORTHO05D000662 8.7e-80 300.8 224 67.0
RcHm_v2.0_Chr6g0280561 Rosa chinensis HOM05D006820 ORTHO05D008526 8.7e-80 300.8 225 67.1
THA.LOC104804082 Tarenaya hassleriana HOM05D006820 ORTHO05D008526 8.7e-80 300.8 222 64.0
CsaV3_5G012520 Cucumis sativus L. HOM05D006820 ORTHO05D008526 1.1e-79 300.4 230 67.8
Haze_02054 Corylus avellana HOM05D006820 ORTHO05D008526 2.5e-79 299.3 250 62.0
AL7G10240 Arabidopsis lyrata HOM05D006820 ORTHO05D008526 3.3e-79 298.9 218 65.6
BraA08t34346Z Brassica rapa HOM05D006820 ORTHO05D008526 3.3e-79 298.9 224 66.5
Carub.0007s0026 Capsella rubella HOM05D006820 ORTHO05D008526 4.3e-79 298.5 219 66.7
TWI79G0714 Tripterygium wilfordii HOM05D006820 ORTHO05D008526 5.6e-79 298.1 221 66.5
EL10Ac9g21258 Beta vulgaris HOM05D006820 ORTHO05D008526 7.3e-79 297.7 221 67.4
PSO675G0855 Papaver somniferum HOM05D006820 ORTHO05D008526 1.6e-78 296.6 227 65.2
Sc18g0005950 Simmondsia chinensis HOM05D006820 ORTHO05D008526 2.1e-78 296.2 229 64.2
Glyma.14G001800 Glycine max HOM05D006820 ORTHO05D008526 4.8e-78 295.0 225 65.8
AT4G38370 Arabidopsis thaliana HOM05D006820 ORTHO05D008526 6.2e-78 294.7 218 65.1
TPR.G18648 Trifolium pratense HOM05D006820 ORTHO05D008526 1.1e-77 293.9 223 64.6
Medtr5g099030 Medicago truncatula HOM05D006820 ORTHO05D008526 1.4e-77 293.5 223 65.0
arahy.Tifrunner.gnm1.ann1.6J1J15 Arachis hypogaea HOM05D006820 ORTHO05D008526 1.8e-77 293.1 221 65.2
Hund06169 Selenicereus undatus HOM05D006820 ORTHO05D008526 2.4e-77 292.7 223 63.7
PSO541G2729 Papaver somniferum HOM05D006820 ORTHO05D008526 3.1e-77 292.4 223 65.5
CARHR294110 Cardamine hirsuta HOM05D006820 ORTHO05D008526 5.3e-77 291.6 223 63.7
arahy.Tifrunner.gnm1.ann1.696HI2 Arachis hypogaea HOM05D006820 ORTHO05D008526 7.6e-76 287.7 221 64.3
RcHm_v2.0_Chr1g0329291 Rosa chinensis HOM05D006820 ORTHO05D008526 2.2e-75 286.2 226 65.0
LjContig00081g0000354 Lotus japonicus HOM05D006820 ORTHO05D008526 1.4e-74 283.5 221 63.8
FvH4_7g04340 Fragaria vesca HOM05D006820 ORTHO05D008526 4.2e-74 282.0 226 63.7
Lalb_Chr10g0095311 Lupinus albus HOM05D006820 ORTHO05D008526 4.2e-74 282.0 221 62.9
ATR0661G540 Amborella trichopoda HOM05D006820 ORTHO05D008526 5.4e-74 281.6 220 64.5
CDE07G0154 Ceratophyllum demersum HOM05D006820 ORTHO05D008526 6.0e-73 278.1 224 62.1
VMungo0647G2489 Vigna mungo HOM05D006820 ORTHO05D008526 7.9e-73 277.7 225 62.2
Gohir.A12G033700 Gossypium hirsutum HOM05D006820 ORTHO05D008526 3.9e-72 275.4 225 63.1
FAN01G0447 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.5e-71 273.5 244 59.4
FAN06G4449 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.6e-70 270.0 244 58.2
FAN03G3185 Fragaria x ananassa HOM05D006820 ORTHO05D008526 2.1e-70 269.6 247 58.3
Oeu021963.1 Olea europaea HOM05D006820 ORTHO05D008526 2.9e-67 259.2 219 62.1
Gohir.D12G038800 Gossypium hirsutum HOM05D006820 ORTHO05D008526 8.7e-64 247.7 165 72.1
Zm00001eb088270 Zea mays HOM05D006820 ORTHO05D008526 4.8e-62 241.9 234 55.1
Os04g0224600 Oryza sativa ssp. japonica HOM05D006820 ORTHO05D008526 3.1e-61 239.2 223 56.1
Dinv41882 Davidia involucrata HOM05D006820 ORTHO05D008526 5.3e-61 238.4 147 77.6
MELO3C022591.2 Cucumis melo HOM05D006820 ORTHO05D008526 3.4e-60 235.7 165 72.1
Rhsim05G0047800 Rhododendron simsii HOM05D006820 ORTHO05D008526 5.8e-60 235.0 237 55.7
COL.COLO4_17938 Corchorus olitorius HOM05D006820 ORTHO05D008526 1.0e-59 234.2 165 71.5
RhsimUnG0142100 Rhododendron simsii HOM05D006820 ORTHO05D008526 4.9e-59 231.9 237 55.3
SalBow1G3348 Salvia bowleyana HOM05D006820 ORTHO05D008526 7.9e-57 224.6 172 62.8
Sed0016165 Sechium edule HOM05D006820 ORTHO05D008526 1.1e-55 220.7 170 64.7
ClCG02G009990 Citrullus lanatus HOM05D006820 ORTHO05D008526 2.5e-55 219.5 171 64.9
AagrBONN_evm.TU.Sc2ySwM_344.5004 Anthoceros agrestis HOM05D006820 ORTHO05D008526 9.6e-55 217.6 227 49.8
Psat2g001280 Pisum sativum HOM05D006820 ORTHO05D008526 1.3e-54 217.2 159 64.8
AagrBONN_evm.TU.Sc2ySwM_344.4995 Anthoceros agrestis HOM05D007543 ORTHO05D008526 3.7e-54 215.7 225 49.3
SMO347G0521 Selaginella moellendorffii HOM05D006820 ORTHO05D008526 8.2e-54 214.5 220 52.7
Pp3c6_22700 Physcomitrium patens HOM05D006820 ORTHO05D008526 9.0e-53 211.1 223 51.6
Mapoly0119s0027 Marchantia polymorpha HOM05D006820 ORTHO05D008526 2.6e-52 209.5 223 50.7
HPP92_025502 Vanilla planifolia HOM05D006820 ORTHO05D008526 1.8e-48 196.8 166 59.0
HPP92_025534 Vanilla planifolia HOM05D006820 ORTHO05D008526 1.5e-47 193.7 166 58.4
C03p77090 Brassica napus HOM05D000564 ORTHO05D002780 1.5e-44 183.7 118 71.2
A08p24230 Brassica napus HOM05D000564 ORTHO05D002780 1.7e-43 180.3 118 69.5
CBR_g8644 Chara braunii HOM05D006820 ORTHO05D008526 4.2e-42 175.6 248 42.7
arahy.Tifrunner.gnm1.ann1.MXMJ8X Arachis hypogaea HOM05D006820 ORTHO05D008526 2.3e-40 169.9 144 59.0
Cc09_g10680 Coffea canephora HOM05D006820 ORTHO05D008526 2.9e-35 152.9 108 66.7
Cpa.g.sc20.200 Carica papaya HOM05D006820 ORTHO05D008526 4.7e-33 145.6 126 57.9
MD10G1042800 Malus domestica HOM05D006820 ORTHO05D008526 3.0e-32 142.9 144 56.2
Cre13.g564000 Chlamydomonas reinhardtii HOM05D006820 ORTHO05D008526 6.7e-32 141.7 218 39.9
CSS0041656 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 2.8e-30 136.3 129 57.4
MD05G1133800 Malus domestica HOM05D006820 ORTHO05D008526 3.7e-30 136.0 149 51.0
arahy.Tifrunner.gnm1.ann1.JU0VI1 Arachis hypogaea HOM05D006820 ORTHO05D008526 1.0e-24 117.9 107 58.9
Cc00_g33760 Coffea canephora HOM05D006820 ORTHO05D008526 1.2e-15 87.8 52 78.8
Cc09_g10670 Coffea canephora HOM05D006820 ORTHO05D008526 1.2e-15 87.8 52 78.8
A09p68760 Brassica napus HOM05D006820 ORTHO05D008526 2.8e-14 83.2 92 47.8
BraA09t42215Z Brassica rapa HOM05D006820 ORTHO05D008526 2.8e-14 83.2 92 47.8
AUR62010100 Chenopodium quinoa HOM05D000002 ORTHO05D000001 7.7e-12 75.1 167 33.5
arahy.Tifrunner.gnm1.ann1.E18LML Arachis hypogaea HOM05D006820 ORTHO05D008526 4.7e-09 65.9 47 66.0
ClCG02G010000 Citrullus lanatus HOM05D006820 ORTHO05D008526 1.3e-06 57.8 31 83.9
Ah.04g159830 Amaranthus hybridus HOM05D002021 ORTHO05D002077 6.3e-06 55.5 176 29.5


User provided reference genes

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