Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 2.9e-126 455.3 235 100.0
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 5.6e-122 441.0 235 96.2
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 6.6e-115 417.5 235 91.1
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 2.8e-113 412.1 235 89.8
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 2.7e-108 395.6 241 87.6
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 2.1e-92 342.8 235 72.8
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 1.1e-88 330.5 236 72.9
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 1.5e-87 326.6 236 72.5
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 7.6e-87 324.3 234 69.7
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 1.3e-86 323.6 236 70.8
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 6.4e-86 321.2 234 70.9
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 1.9e-85 319.7 228 74.1
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 2.4e-85 319.3 221 75.1
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 4.6e-84 315.1 235 71.5
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 1.3e-83 313.5 257 64.6
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 6.7e-83 311.2 237 69.6
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 1.1e-82 310.5 238 68.9
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 1.5e-82 310.1 235 68.5
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.5e-82 309.3 236 69.1
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 3.3e-82 308.9 235 67.2
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 4.3e-82 308.5 237 69.6
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 5.6e-82 308.1 236 68.6
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 5.6e-82 308.1 221 72.9
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 7.4e-82 307.8 235 68.1
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.3e-81 307.0 236 68.2
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 2.8e-81 305.8 225 68.4
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 3.7e-81 305.4 237 67.1
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 4.8e-81 305.1 235 66.0
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 4.8e-81 305.1 235 65.5
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 6.2e-81 304.7 237 68.8
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.4e-80 303.5 220 69.1
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 1.8e-80 303.1 236 68.2
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 2.4e-80 302.8 220 71.4
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 2.4e-80 302.8 236 67.8
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 2.4e-80 302.8 218 72.9
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 3.1e-80 302.4 236 67.8
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 4.0e-80 302.0 235 68.1
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 1.2e-79 300.4 235 66.8
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 1.2e-79 300.4 220 70.5
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 2.0e-79 299.7 235 65.1
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 2.0e-79 299.7 235 67.2
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 2.6e-79 299.3 236 66.1
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 3.4e-79 298.9 254 64.2
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 7.6e-79 297.7 224 68.3
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 1.0e-78 297.4 234 66.2
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 1.3e-78 297.0 218 70.2
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 1.3e-78 297.0 238 66.0
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 1.3e-78 297.0 235 64.7
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 1.7e-78 296.6 226 66.8
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 2.2e-78 296.2 236 66.1
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 4.9e-78 295.0 225 67.1
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 4.9e-78 295.0 235 64.7
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 6.5e-78 294.7 235 65.5
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 6.5e-78 294.7 236 64.4
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 6.5e-78 294.7 221 67.4
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 6.5e-78 294.7 235 65.1
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 6.5e-78 294.7 216 68.1
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 1.1e-77 293.9 222 67.6
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 1.4e-77 293.5 235 64.3
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 1.9e-77 293.1 233 67.4
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 2.5e-77 292.7 236 64.8
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 2.5e-77 292.7 235 66.8
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 2.5e-77 292.7 234 64.5
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 2.5e-77 292.7 237 64.6
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 5.5e-77 291.6 236 64.4
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 5.5e-77 291.6 216 68.1
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 7.1e-77 291.2 236 64.0
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 9.3e-77 290.8 236 63.1
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 9.3e-77 290.8 235 63.0
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 9.3e-77 290.8 216 69.4
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 9.3e-77 290.8 233 64.4
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 2.1e-76 289.7 233 64.4
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.1e-76 289.7 235 63.8
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 4.6e-76 288.5 220 70.0
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 4.6e-76 288.5 223 68.6
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 4.6e-76 288.5 218 69.3
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 6.0e-76 288.1 240 63.3
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 6.0e-76 288.1 236 62.3
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 6.0e-76 288.1 212 69.3
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 7.9e-76 287.7 223 66.8
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 1.3e-75 287.0 227 67.8
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.3e-75 286.2 234 65.0
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 3.0e-75 285.8 236 61.9
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 3.0e-75 285.8 234 64.5
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.0e-75 285.8 234 65.0
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 6.7e-75 284.6 223 68.6
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 8.7e-75 284.3 241 62.2
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 8.7e-75 284.3 221 69.2
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 8.7e-75 284.3 224 65.6
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 1.5e-74 283.5 293 55.6
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 7.4e-74 281.2 231 61.5
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 9.6e-74 280.8 218 66.5
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 1.3e-73 280.4 220 65.0
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 1.6e-73 280.0 216 66.2
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 2.1e-73 279.6 231 63.2
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 2.8e-73 279.3 213 65.7
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 6.3e-73 278.1 235 61.7
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 6.3e-73 278.1 224 65.6
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 6.3e-73 278.1 219 66.7
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 8.2e-73 277.7 232 61.2
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 1.1e-72 277.3 236 60.6
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 2.4e-72 276.2 218 63.8
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.4e-72 276.2 190 74.7
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.4e-72 276.2 190 74.7
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 4.1e-72 275.4 235 60.9
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 5.3e-72 275.0 235 60.9
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 6.9e-72 274.6 217 65.0
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 9.0e-72 274.2 231 60.2
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 9.0e-72 274.2 231 60.2
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 2.0e-71 273.1 256 59.4
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 7.6e-71 271.2 266 59.0
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 7.6e-71 271.2 223 62.8
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 2.5e-69 266.2 223 65.9
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 5.5e-69 265.0 232 60.3
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 1.6e-68 263.5 310 48.1
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 4.6e-68 261.9 145 93.1
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 6.1e-68 261.5 236 61.4
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 1.0e-67 260.8 215 63.3
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 4.3e-66 255.4 170 75.9
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 1.3e-65 253.8 170 75.3
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 6.3e-65 251.5 235 59.6
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 8.2e-65 251.1 236 59.3
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 1.2e-63 247.3 195 66.2
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 1.4e-61 240.4 235 57.4
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 3.2e-61 239.2 228 58.3
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.6e-60 236.9 164 73.2
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 5.1e-59 231.9 215 60.0
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 4.5e-55 218.8 225 51.6
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 1.0e-54 217.6 176 57.4
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 5.0e-54 215.3 172 64.0
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 2.5e-53 213.0 227 48.5
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 7.2e-53 211.5 219 51.6
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 9.4e-53 211.1 235 51.5
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 1.4e-51 207.2 130 80.8
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 2.3e-51 206.5 158 69.0
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 6.7e-51 204.9 129 80.6
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 1.5e-50 203.8 177 58.8
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 3.3e-50 202.6 176 61.9
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 7.4e-50 201.4 257 43.2
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 9.7e-50 201.1 117 82.9
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 1.7e-49 200.3 209 55.5
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 2.2e-46 189.9 180 60.6
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 2.1e-44 183.3 125 70.4
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 7.5e-42 174.9 220 45.0
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 2.4e-40 169.9 104 78.8
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 5.2e-35 152.1 189 50.8
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 1.5e-34 150.6 223 41.7
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 4.4e-34 149.1 186 44.6
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 5.9e-31 138.7 296 35.1
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 5.9e-31 138.7 179 46.9
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 1.5e-26 124.0 79 79.7
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 7.5e-26 121.7 151 50.3
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.7e-25 120.6 134 54.5
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 8.3e-25 118.2 75 78.7
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 4.3e-21 105.9 64 79.7
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 9.5e-21 104.8 67 76.1
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 1.6e-20 104.0 106 54.7
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 1.0e-19 101.3 120 45.0
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 1.4e-19 100.9 168 38.7
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 3.0e-19 99.8 112 51.8
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 2.0e-18 97.1 173 37.6
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 2.0e-18 97.1 120 43.3
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 9.8e-18 94.7 59 78.0
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 2.2e-17 93.6 81 59.3
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 7.8e-15 85.1 227 33.9
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 3.9e-14 82.8 144 39.6
Medtr5g029710 Medicago truncatula HOM05D000001 ORTHO05D004986 1.5e-13 80.9 78 50.0
Glyma.08G299100 Glycine max HOM05D000001 ORTHO05D002756 8.0e-12 75.1 95 46.3
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 8.0e-12 75.1 109 44.0
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 2.6e-10 70.1 46 71.7
BolC8t48554H Brassica oleracea HOM05D000001 ORTHO05D004986 3.7e-09 66.2 52 67.3
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 6.4e-09 65.5 103 41.7
arahy.Tifrunner.gnm1.ann1.A1RXRR Arachis hypogaea HOM05D000001 ORTHO05D004986 2.0e-07 60.5 44 61.4
QL05p059782 Quercus lobata HOM05D000003 ORTHO05D000006 4.6e-07 59.3 49 67.3
Nitab4.5_0000001g0510 Nicotiana tabacum HOM05D000001 ORTHO05D004986 3.9e-06 56.2 34 70.6


User provided reference genes

Program Settings