Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G0132 Papaver somniferum HOM05D003381 ORTHO05D003880 2.9e-46 188.3 105 100.0
PSO675G1709 Papaver somniferum HOM05D003381 ORTHO05D003880 4.6e-44 181.0 104 97.1
PSO017G3293 Papaver somniferum HOM05D003381 ORTHO05D003880 9.1e-24 113.6 83 75.9
TAR375G0964 Trochodendron aralioides HOM05D003381 ORTHO05D003880 1.1e-21 106.7 91 70.3
CAN.G303.62 Capsicum annuum HOM05D003381 ORTHO05D003880 5.5e-21 104.4 90 66.7
Sopen03g027490 Solanum pennellii HOM05D003381 ORTHO05D003880 2.7e-20 102.1 90 64.4
TAR374G1397 Trochodendron aralioides HOM05D003381 ORTHO05D003880 2.7e-20 102.1 82 70.7
Peaxi162Scf00007g00254 Petunia axillaris HOM05D003381 ORTHO05D003880 4.7e-20 101.3 90 62.2
Nitab4.5_0007121g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 8.0e-20 100.5 90 62.2
FAN10G2693 Fragaria x ananassa HOM05D003381 ORTHO05D003880 1.4e-19 99.8 93 65.6
FAN10G4285 Fragaria x ananassa HOM05D003381 ORTHO05D003880 1.4e-19 99.8 93 65.6
RcHm_v2.0_Chr1g0383321 Rosa chinensis HOM05D003381 ORTHO05D003880 1.4e-19 99.8 93 66.7
CAN.G303.61 Capsicum annuum HOM05D003381 ORTHO05D003880 1.8e-19 99.4 90 64.4
Solyc03g096760.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 3.0e-19 98.6 83 66.3
Aqoxy5G04393 Aquilegia oxysepala HOM05D003381 ORTHO05D003880 4.0e-19 98.2 79 73.4
Prupe.2G322300 Prunus persica HOM05D003381 ORTHO05D003880 5.2e-19 97.8 90 63.3
CSS0005275 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 1.2e-18 96.7 84 67.9
FAN03G2343 Fragaria x ananassa HOM05D003381 ORTHO05D003880 1.5e-18 96.3 93 64.5
PGSC0003DMG400027025 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.5e-18 96.3 87 65.5
MSTRG.26951 Avicennia marina HOM05D003381 ORTHO05D003880 2.6e-18 95.5 92 64.1
Cc02_g00580 Coffea canephora HOM05D003381 ORTHO05D003880 3.4e-18 95.1 89 61.8
Sopen06g029340 Solanum pennellii HOM05D003381 ORTHO05D003880 4.4e-18 94.7 87 66.7
Migut.F00121 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.3e-17 93.2 85 67.1
HanXRQChr08g0225861 Helianthus annuus HOM05D003381 ORTHO05D003880 1.3e-17 93.2 84 61.9
AUR62005946 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.7e-17 92.8 90 57.8
Hma1.2p1_0115F.1_g055840 Hydrangea macrophylla HOM05D003381 ORTHO05D003880 2.2e-17 92.4 83 66.3
Atru.chr12.2499 Acer truncatum HOM05D003381 ORTHO05D003880 2.8e-17 92.0 86 67.4
Atru.chr12.2523 Acer truncatum HOM05D003381 ORTHO05D003880 2.8e-17 92.0 86 67.4
Phvul.009G040500 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 2.8e-17 92.0 89 62.9
Dinv17275 Davidia involucrata HOM05D003381 ORTHO05D003880 6.3e-17 90.9 86 60.5
SalBow4G2332 Salvia bowleyana HOM05D003381 ORTHO05D003880 8.3e-17 90.5 91 61.5
Dinv29190 Davidia involucrata HOM05D003381 ORTHO05D003880 2.4e-16 89.0 80 65.0
DCAR_010556 Daucus carota HOM05D003381 ORTHO05D003880 3.1e-16 88.6 89 60.7
Sopen03g027520 Solanum pennellii HOM05D003381 ORTHO05D003880 3.1e-16 88.6 87 60.9
PGSC0003DMG400000547 Solanum tuberosum HOM05D003381 ORTHO05D003880 3.1e-16 88.6 90 60.0
TPR.G35911 Trifolium pratense HOM05D003381 ORTHO05D003880 3.1e-16 88.6 93 58.1
Solyc03g096780.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 5.4e-16 87.8 87 60.9
PGSC0003DMG400000545 Solanum tuberosum HOM05D003381 ORTHO05D003880 5.4e-16 87.8 90 58.9
Ciclev10022951m.g Citrus clementina HOM05D003381 ORTHO05D003880 9.1e-16 87.0 88 60.2
CANSAT21G1431 Cannabis sativa HOM05D003381 ORTHO05D003880 2.7e-15 85.5 85 62.4
EL10Ac3g05129 Beta vulgaris HOM05D003381 ORTHO05D003880 3.5e-15 85.1 88 56.8
Migut.F00967 Erythranthe guttata HOM05D003381 ORTHO05D003880 3.5e-15 85.1 95 61.1
unitig_60.g25635 Utricularia gibba HOM05D003381 ORTHO05D003880 3.5e-15 85.1 93 58.1
FvH4_7g33340 Fragaria vesca HOM05D003381 ORTHO05D003880 4.5e-15 84.7 93 59.1
Lj1g0021256 Lotus japonicus HOM05D003381 ORTHO05D003880 4.5e-15 84.7 85 61.2
CANSAT21G0934 Cannabis sativa HOM05D003381 ORTHO05D003880 5.9e-15 84.3 85 62.4
Lalb_Chr11g0067571 Lupinus albus HOM05D003381 ORTHO05D003880 5.9e-15 84.3 84 60.7
Nitab4.5_0000115g0190 Nicotiana tabacum HOM05D003381 ORTHO05D003880 5.9e-15 84.3 89 59.6
Nitab4.5_0002691g0070 Nicotiana tabacum HOM05D003381 ORTHO05D003880 7.7e-15 84.0 90 57.8
MD07G1303600 Malus domestica HOM05D003381 ORTHO05D003880 1.0e-14 83.6 84 59.5
AUR62028119 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.3e-14 83.2 96 52.1
HanXRQChr08g0225881 Helianthus annuus HOM05D003381 ORTHO05D003880 1.3e-14 83.2 86 57.0
Peaxi162Scf00815g00116 Petunia axillaris HOM05D003381 ORTHO05D003880 1.3e-14 83.2 83 63.9
CSS0002942 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 1.7e-14 82.8 88 59.1
ATR0579G061 Amborella trichopoda HOM05D003381 ORTHO05D003880 2.2e-14 82.4 83 57.8
ClCG01G000030 Citrullus lanatus HOM05D003381 ORTHO05D003880 2.2e-14 82.4 85 62.4
Oeu063749.1 Olea europaea HOM05D003381 ORTHO05D003880 2.2e-14 82.4 90 55.6
Potri.012G004500 Populus trichocarpa HOM05D003381 ORTHO05D003880 2.2e-14 82.4 80 61.2
Ca_16840_v3 Cicer arietinum L. HOM05D003381 ORTHO05D003880 2.9e-14 82.0 79 64.6
Migut.F00119 Erythranthe guttata HOM05D003381 ORTHO05D003880 2.9e-14 82.0 77 59.7
Sopen03g027500 Solanum pennellii HOM05D003381 ORTHO05D003880 2.9e-14 82.0 90 56.7
Glyma.14G188300 Glycine max HOM05D003381 ORTHO05D003880 3.8e-14 81.6 79 63.3
Ah.13g071060 Amaranthus hybridus HOM05D003381 ORTHO05D003880 5.0e-14 81.3 81 58.0
ECA233G1855 Erigeron canadensis HOM05D003381 ORTHO05D003880 5.0e-14 81.3 87 58.6
Nitab4.5_0002691g0080 Nicotiana tabacum HOM05D003381 ORTHO05D003880 5.0e-14 81.3 90 56.7
Sc14g0006700 Simmondsia chinensis HOM05D003381 ORTHO05D003880 5.0e-14 81.3 83 60.2
SGA_v2.0_scaffold44G16873 Striga asiatica HOM05D003381 ORTHO05D003880 5.0e-14 81.3 88 58.0
Migut.F00966 Erythranthe guttata HOM05D003381 ORTHO05D003880 6.5e-14 80.9 85 58.8
LjContig00155g0019595 Lotus japonicus HOM05D003381 ORTHO05D003880 8.5e-14 80.5 83 56.6
Phvul.008G187900 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 8.5e-14 80.5 86 57.0
Eucgr.K00481 Eucalyptus grandis HOM05D003381 ORTHO05D003880 1.1e-13 80.1 90 56.7
HanXRQChr08g0225771 Helianthus annuus HOM05D003381 ORTHO05D003880 1.5e-13 79.7 86 54.7
HanXRQChr08g0225851 Helianthus annuus HOM05D003381 ORTHO05D003880 1.5e-13 79.7 86 54.7
MD01G1231600 Malus domestica HOM05D003381 ORTHO05D003880 1.5e-13 79.7 91 57.1
Nitab4.5_0002867g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.5e-13 79.7 90 57.8
SalBow4G1643 Salvia bowleyana HOM05D003381 ORTHO05D003880 1.5e-13 79.7 76 60.5
Sabra15G0000300 Salix brachista HOM05D003381 ORTHO05D003880 2.5e-13 79.0 80 60.0
Actinidia34289 Actinidia chinensis HOM05D003381 ORTHO05D003880 3.2e-13 78.6 81 60.5
Nn3g18090 Nelumbo nucifera HOM05D003381 ORTHO05D003880 3.2e-13 78.6 96 57.3
Lalb_Chr08g0239391 Lupinus albus HOM05D003381 ORTHO05D003880 4.2e-13 78.2 85 57.6
Manes.01G002300 Manihot esculenta HOM05D003381 ORTHO05D003880 4.2e-13 78.2 85 58.8
Sabra12G0000400 Salix brachista HOM05D003381 ORTHO05D003880 4.2e-13 78.2 80 58.8
HPP92_008910 Vanilla planifolia HOM05D003381 ORTHO05D003880 4.2e-13 78.2 79 57.0
Lalb_Chr04g0252571 Lupinus albus HOM05D003381 ORTHO05D003880 5.5e-13 77.8 95 52.6
PGSC0003DMG400000546 Solanum tuberosum HOM05D003381 ORTHO05D003880 5.5e-13 77.8 90 54.4
SGA_v2.0_scaffold351G49675 Striga asiatica HOM05D003381 ORTHO05D003880 5.5e-13 77.8 88 54.5
HanXRQChr16g0499781 Helianthus annuus HOM05D003381 ORTHO05D003880 1.2e-12 76.6 83 51.8
Medtr3g093400 Medicago truncatula HOM05D003381 ORTHO05D003880 1.2e-12 76.6 90 53.3
Oeu017357.1 Olea europaea HOM05D003381 ORTHO05D003880 1.2e-12 76.6 90 55.6
Psat5g070520 Pisum sativum HOM05D003381 ORTHO05D003880 1.6e-12 76.3 84 58.3
Potri.015G000500 Populus trichocarpa HOM05D003381 ORTHO05D003880 1.6e-12 76.3 84 56.0
Sed0013785 Sechium edule HOM05D003381 ORTHO05D003880 1.6e-12 76.3 84 59.5
Ah.13g071070 Amaranthus hybridus HOM05D003381 ORTHO05D003880 2.1e-12 75.9 84 52.4
MBI04_g09823_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 2.1e-12 75.9 84 57.1
Psat5g070560 Pisum sativum HOM05D003381 ORTHO05D003880 2.1e-12 75.9 79 60.8
Solyc03g096770.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 2.1e-12 75.9 89 56.2
TWI81G0266 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 2.1e-12 75.9 79 62.0
CsaV3_5G000160 Cucumis sativus L. HOM05D003381 ORTHO05D003880 2.7e-12 75.5 83 60.2
Cpa.g.sc3.189 Carica papaya HOM05D003381 ORTHO05D003880 3.6e-12 75.1 75 61.3
TWI81G0192 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 3.6e-12 75.1 79 62.0
CAN.G65.142 Capsicum annuum HOM05D003381 ORTHO05D003880 1.0e-11 73.6 63 66.7
Gohir.A08G106800 Gossypium hirsutum HOM05D003381 ORTHO05D003880 2.3e-11 72.4 89 53.9
Solyc06g072990.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 2.3e-11 72.4 85 55.3
Zm00001eb220550 Zea mays HOM05D003381 ORTHO05D003880 5.2e-11 71.2 85 51.8
AUR62005945 Chenopodium quinoa HOM05D003381 ORTHO05D003880 6.8e-11 70.9 90 48.9
Glyma.06G139300 Glycine max HOM05D003381 ORTHO05D003880 6.8e-11 70.9 90 52.2
Peaxi162Scf00685g10014 Petunia axillaris HOM05D003381 ORTHO05D003880 6.8e-11 70.9 67 58.2
Gohir.D08G117900 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.5e-10 69.7 89 51.7
Glyma.04G225500 Glycine max HOM05D003381 ORTHO05D003880 2.0e-10 69.3 85 54.1
Gohir.A08G106600 Gossypium hirsutum HOM05D003381 ORTHO05D003880 2.0e-10 69.3 89 50.6
SEGI_37007 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 2.0e-10 69.3 81 49.4
Lalb_Chr10g0102971 Lupinus albus HOM05D003381 ORTHO05D003880 2.6e-10 68.9 82 51.2
Oeu055427.1 Olea europaea HOM05D003381 ORTHO05D003880 3.4e-10 68.6 64 59.4
Haze_00337 Corylus avellana HOM05D003381 ORTHO05D003880 4.4e-10 68.2 75 58.7
Gorai.004G126500 Gossypium raimondii HOM05D003381 ORTHO05D003880 4.4e-10 68.2 89 50.6
Lsat_1_v5_gn_2_3421 Lactuca sativa HOM05D003381 ORTHO05D003880 4.4e-10 68.2 91 48.4
VMungo1309G1451 Vigna mungo HOM05D003381 ORTHO05D003880 4.4e-10 68.2 89 53.9
EL10Ac3g05128 Beta vulgaris HOM05D003381 ORTHO05D003880 5.7e-10 67.8 80 52.5
Zm00001eb043810 Zea mays HOM05D003381 ORTHO05D003880 1.3e-09 66.6 83 50.6
Gohir.D08G117850 Gossypium hirsutum HOM05D003381 ORTHO05D003880 2.2e-09 65.9 89 49.4
Gorai.004G126400 Gossypium raimondii HOM05D003381 ORTHO05D003880 2.2e-09 65.9 89 49.4
CDE09G1369 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 2.8e-09 65.5 94 47.9
ECA232G1694 Erigeron canadensis HOM05D003381 ORTHO05D003880 2.8e-09 65.5 72 48.6
SEGI_09109 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 3.7e-09 65.1 81 51.9
CDE04G0378 Ceratophyllum demersum HOM05D003381 ORTHO05D003880 4.9e-09 64.7 73 53.4
COL.COLO4_14402 Corchorus olitorius HOM05D003381 ORTHO05D003880 4.9e-09 64.7 54 64.8
Eucgr.K00482 Eucalyptus grandis HOM05D003381 ORTHO05D003880 4.9e-09 64.7 90 50.0
Eucgr.K00530 Eucalyptus grandis HOM05D003381 ORTHO05D003880 4.9e-09 64.7 90 50.0
QL11p009417 Quercus lobata HOM05D003381 ORTHO05D003880 6.3e-09 64.3 78 56.4
vmacro06476 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 6.3e-09 64.3 68 58.8
Lsat_1_v5_gn_8_4241 Lactuca sativa HOM05D003381 ORTHO05D003880 1.4e-08 63.2 91 46.2
PGR142G3642 Punica granatum HOM05D003381 ORTHO05D003880 1.4e-08 63.2 87 49.4
Peaxi162Scf00542g00013 Petunia axillaris HOM05D003381 ORTHO05D003880 1.8e-08 62.8 55 70.9
Lsat_1_v5_gn_8_4301 Lactuca sativa HOM05D003381 ORTHO05D003880 3.1e-08 62.0 91 46.2
Os10g0509600 Oryza sativa ssp. japonica HOM05D003381 ORTHO05D003880 5.4e-08 61.2 84 47.6
SEGI_32370 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 5.4e-08 61.2 81 49.4
Duzib084G1005 Durio zibethinus HOM05D003381 ORTHO05D003880 7.0e-08 60.8 90 46.7
MBI04_g21753_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 9.2e-08 60.5 59 62.7
MBI12_g23072_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 1.6e-07 59.7 87 48.3
MBI12_g33141_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 1.6e-07 59.7 87 48.3
COL.COLO4_14401 Corchorus olitorius HOM05D003381 ORTHO05D003880 2.7e-07 58.9 87 49.4
QL09p005975 Quercus lobata HOM05D003381 ORTHO05D003880 4.5e-07 58.2 86 46.5
vmacro06477 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 4.5e-07 58.2 90 47.8
Peaxi162Scf01650g00008 Petunia axillaris HOM05D003381 ORTHO05D003880 5.9e-07 57.8 90 45.6
BcaC07g39419 Brassica carinata HOM05D003381 ORTHO05D003880 1.0e-06 57.0 84 45.2
Carub.0005s1590 Capsella rubella HOM05D003381 ORTHO05D003880 1.3e-06 56.6 80 48.8
A06p18190 Brassica napus HOM05D003381 ORTHO05D003880 2.3e-06 55.8 76 48.7
BraA06t24903Z Brassica rapa HOM05D003381 ORTHO05D003880 2.3e-06 55.8 76 48.7
MBI12_g23073_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 2.3e-06 55.8 87 46.0
SEGI_32433 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 2.3e-06 55.8 81 46.9
BolC8t50073H Brassica oleracea HOM05D003381 ORTHO05D003880 2.9e-06 55.5 76 48.7
THA.LOC104798994 Tarenaya hassleriana HOM05D003381 ORTHO05D003880 2.9e-06 55.5 76 51.3
Thhalv10010815m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 3.8e-06 55.1 87 48.3
BcaC07g39418 Brassica carinata HOM05D003381 ORTHO05D003880 5.0e-06 54.7 80 46.2
AT3G49570 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 6.6e-06 54.3 76 48.7
Os10g0509401 Oryza sativa ssp. japonica HOM05D003381 ORTHO05D003880 6.6e-06 54.3 85 47.1


User provided reference genes

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