Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 1.5e-195 686.0 344 100.0
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 2.4e-190 668.7 344 98.0
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.8e-116 423.3 323 65.0
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 9.7e-115 417.5 345 62.0
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 2.4e-113 412.9 336 61.6
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 3.1e-113 412.5 249 77.5
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 3.4e-112 409.1 341 63.0
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 4.5e-112 408.7 341 62.5
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 3.8e-111 405.6 271 70.1
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 8.5e-111 404.4 276 69.9
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 2.5e-110 402.9 310 64.2
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 9.4e-110 401.0 277 69.0
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 1.2e-109 400.6 325 61.5
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 1.2e-109 400.6 242 75.6
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 1.2e-109 400.6 242 76.0
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 1.2e-109 400.6 242 76.0
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 1.0e-108 397.5 249 73.5
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 1.0e-108 397.5 303 65.0
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.8e-108 396.7 274 68.2
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 1.8e-108 396.7 246 74.0
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 3.0e-108 396.0 247 75.3
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 3.9e-108 395.6 246 74.4
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 8.8e-108 394.4 309 60.8
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 1.1e-107 394.0 240 75.0
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 1.1e-107 394.0 242 75.2
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 1.1e-107 394.0 290 64.1
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 1.5e-107 393.7 308 63.0
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 1.5e-107 393.7 242 76.0
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 1.5e-107 393.7 244 74.6
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 2.0e-107 393.3 246 74.8
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 2.5e-107 392.9 308 63.3
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 4.3e-107 392.1 311 60.5
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 5.7e-107 391.7 313 61.3
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 7.4e-107 391.3 245 75.5
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 9.7e-107 391.0 308 63.0
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 9.7e-107 391.0 245 73.1
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 9.7e-107 391.0 291 64.9
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 9.7e-107 391.0 259 72.2
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 1.3e-106 390.6 244 75.4
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 1.3e-106 390.6 248 73.8
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 1.3e-106 390.6 248 73.0
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 1.7e-106 390.2 310 62.3
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.7e-106 390.2 241 75.5
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 1.7e-106 390.2 247 73.7
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 1.7e-106 390.2 251 72.9
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.2e-106 389.8 304 65.8
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 2.8e-106 389.4 245 72.2
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.8e-106 389.4 304 65.8
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 2.8e-106 389.4 304 65.8
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 3.7e-106 389.0 278 66.5
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 3.7e-106 389.0 264 69.7
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 3.7e-106 389.0 244 73.8
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 6.3e-106 388.3 290 65.5
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 6.3e-106 388.3 243 73.7
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 8.2e-106 387.9 246 73.2
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 1.1e-105 387.5 258 69.0
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 1.4e-105 387.1 304 63.8
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 1.8e-105 386.7 241 73.9
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 2.4e-105 386.3 244 73.0
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 3.1e-105 386.0 294 65.0
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 3.1e-105 386.0 248 71.0
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 3.1e-105 386.0 244 73.8
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 4.1e-105 385.6 300 63.3
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 5.3e-105 385.2 310 60.0
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 9.1e-105 384.4 249 71.1
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 9.1e-105 384.4 289 65.7
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 1.5e-104 383.6 290 65.2
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 2.0e-104 383.3 242 73.1
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 4.5e-104 382.1 262 68.7
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 5.9e-104 381.7 326 59.8
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 7.7e-104 381.3 282 63.8
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 1.0e-103 380.9 242 73.1
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 1.3e-103 380.6 242 72.7
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 1.7e-103 380.2 251 70.9
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 2.2e-103 379.8 264 68.6
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 6.5e-103 378.3 276 65.6
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 6.5e-103 378.3 245 71.0
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 1.1e-102 377.5 245 69.0
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 2.5e-102 376.3 245 69.0
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 4.2e-102 375.6 334 57.2
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 1.6e-101 373.6 245 68.6
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 2.7e-101 372.9 330 58.8
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 3.6e-101 372.5 261 69.0
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 6.1e-101 371.7 244 68.9
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 6.1e-101 371.7 241 68.9
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 1.0e-100 370.9 243 71.2
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 3.9e-100 369.0 262 66.0
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 8.2e-98 361.3 298 62.1
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 2.6e-96 356.3 291 60.1
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 2.6e-96 356.3 245 66.9
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 2.9e-95 352.8 258 65.1
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 1.1e-94 350.9 455 44.8
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 1.9e-94 350.1 310 58.4
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 1.2e-93 347.4 257 67.3
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 4.7e-93 345.5 263 63.5
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 4.7e-93 345.5 238 70.2
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 8.8e-92 341.3 274 58.8
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 1.1e-91 340.9 297 57.9
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 2.8e-90 336.3 359 50.1
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 1.1e-89 334.3 327 50.8
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 2.4e-89 333.2 214 70.1
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 2.4e-89 333.2 212 72.2
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 3.1e-89 332.8 293 54.6
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 3.5e-88 329.3 248 64.9
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 2.9e-87 326.2 241 63.5
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 8.8e-84 314.7 223 67.7
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 1.3e-82 310.8 252 61.5
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 1.4e-81 307.4 214 69.2
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 1.6e-80 303.9 242 63.2
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 7.2e-78 295.0 253 59.7
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 9.8e-75 284.6 251 53.4
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 3.3e-70 269.6 231 58.9
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 3.3e-70 269.6 212 58.5
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 9.2e-65 251.5 247 47.8
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 1.2e-64 251.1 167 70.7
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 2.7e-64 250.0 251 51.4
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 3.6e-61 239.6 176 63.6
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 8.9e-60 235.0 224 55.4
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 8.9e-60 235.0 164 64.6
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 1.3e-58 231.1 159 67.3
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 6.0e-56 222.2 238 42.9
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 7.8e-56 221.9 142 73.2
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 6.6e-55 218.8 206 57.3
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 1.5e-51 207.6 238 43.7
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 3.4e-51 206.5 192 55.2
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 2.4e-49 200.3 301 42.9
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 9.2e-49 198.4 152 61.2
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 2.7e-48 196.8 110 79.1
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 7.8e-48 195.3 143 65.7
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 5.1e-47 192.6 165 57.6
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 5.1e-47 192.6 137 64.2
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 4.7e-45 186.0 130 63.1
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 6.8e-44 182.2 128 69.5
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 7.6e-43 178.7 110 76.4
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 9.9e-43 178.3 99 76.8
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 3.2e-41 173.3 111 67.6
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 3.2e-41 173.3 111 68.5
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.2e-40 171.4 239 36.8
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 1.3e-39 167.9 153 54.2
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 1.9e-38 164.1 135 59.3
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 1.9e-38 164.1 135 59.3
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 3.6e-37 159.8 239 37.2
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 9.9e-35 151.8 131 57.3
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 6.4e-34 149.1 163 49.1
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 2.7e-32 143.7 210 38.6
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 3.5e-32 143.3 82 75.6
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 3.0e-31 140.2 92 66.3
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 1.6e-29 134.4 77 74.0
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 1.1e-25 121.7 77 68.8
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 1.6e-24 117.9 130 50.8
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.6e-24 117.9 56 85.7
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 7.9e-24 115.5 76 64.5
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 5.6e-22 109.4 88 60.2
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 6.2e-21 105.9 61 75.4
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 6.2e-21 105.9 66 66.7
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 1.5e-19 101.3 245 28.2
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 4.5e-19 99.8 125 49.6
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 1.4e-17 94.7 65 67.7
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.6e-16 91.3 114 42.1
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 1.3e-15 88.2 48 79.2
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 1.3e-13 81.6 47 74.5
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 5.3e-12 76.3 61 49.2
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 2.2e-10 70.9 102 38.2
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 1.0e-07 62.0 44 65.9
Zm00001eb348000 Zea mays HOM05D004373 ORTHO05D005203 1.0e-07 62.0 77 42.9


User provided reference genes

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