Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G0023 Papaver somniferum HOM05D005838 ORTHO05D007177 1.1e-118 429.9 210 100.0
PSO339G6019 Papaver somniferum HOM05D005838 ORTHO05D007177 2.1e-112 409.1 211 95.7
Nn1g07214 Nelumbo nucifera HOM05D005838 ORTHO05D007177 2.0e-94 349.4 212 82.5
TAR369G1142 Trochodendron aralioides HOM05D005838 ORTHO05D007177 4.4e-94 348.2 191 86.4
HPP92_027375 Vanilla planifolia HOM05D005838 ORTHO05D007177 8.3e-93 344.0 212 78.8
Aqoxy6G01179 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 7.0e-92 340.9 212 80.7
GSVIVG01024370001 Vitis vinifera HOM05D005838 ORTHO05D007177 3.5e-91 338.6 209 78.9
Sc11g0007930 Simmondsia chinensis HOM05D005838 ORTHO05D007177 4.5e-91 338.2 212 76.9
Aqoxy3G02271 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 2.9e-90 335.5 212 79.2
CDE04G0192 Ceratophyllum demersum HOM05D005838 ORTHO05D007177 5.6e-89 331.3 212 77.4
Zm00001eb331580 Zea mays HOM05D005838 ORTHO05D007177 7.3e-89 330.9 212 76.9
Os01g0248600 Oryza sativa ssp. japonica HOM05D005838 ORTHO05D007177 9.5e-89 330.5 212 75.9
Hund16085 Selenicereus undatus HOM05D005838 ORTHO05D007177 4.7e-88 328.2 212 76.4
Dinv03043 Davidia involucrata HOM05D005838 ORTHO05D007177 1.5e-86 323.2 209 76.1
AUR62012091 Chenopodium quinoa HOM05D005838 ORTHO05D007177 2.0e-86 322.8 205 74.6
AUR62039375 Chenopodium quinoa HOM05D005838 ORTHO05D007177 2.6e-86 322.4 205 74.1
TAR623G0537 Trochodendron aralioides HOM05D005838 ORTHO05D007177 1.3e-85 320.1 199 79.4
Dinv26018 Davidia involucrata HOM05D005838 ORTHO05D007177 6.4e-85 317.8 209 75.1
EL10Ac2g04744 Beta vulgaris HOM05D005838 ORTHO05D007177 8.3e-85 317.4 227 68.7
ATR0579G085 Amborella trichopoda HOM05D005838 ORTHO05D007177 4.1e-84 315.1 211 70.6
MBI14_g35405_MAGBIO Magnolia biondii HOM05D005838 ORTHO05D007177 7.0e-84 314.3 212 75.5
Haze_17070 Corylus avellana HOM05D005838 ORTHO05D007177 1.6e-83 313.2 205 73.7
QL08p059697 Quercus lobata HOM05D005838 ORTHO05D007177 1.6e-83 313.2 209 72.2
CiPaw.01G287700 Carya illinoinensis HOM05D005838 ORTHO05D007177 2.7e-83 312.4 209 73.2
CSS0040522 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 8.6e-82 307.4 209 70.8
CsaV3_4G009680 Cucumis sativus L. HOM05D005838 ORTHO05D007177 8.6e-82 307.4 213 70.0
Hma1.2p1_0405F.1_g145680 Hydrangea macrophylla HOM05D005838 ORTHO05D007177 8.6e-82 307.4 208 72.6
Duzib114G0236 Durio zibethinus HOM05D005838 ORTHO05D007177 1.1e-81 307.0 209 73.2
Thecc.10G041400 Theobroma cacao HOM05D005838 ORTHO05D007177 1.9e-81 306.2 209 72.2
COL.COLO4_15048 Corchorus olitorius HOM05D005838 ORTHO05D007177 4.3e-81 305.1 208 72.6
Gohir.A10G219500 Gossypium hirsutum HOM05D005838 ORTHO05D007177 7.3e-81 304.3 209 70.8
Gohir.D10G229000 Gossypium hirsutum HOM05D005838 ORTHO05D007177 7.3e-81 304.3 209 70.8
Gorai.011G261500 Gossypium raimondii HOM05D005838 ORTHO05D007177 7.3e-81 304.3 209 70.8
Lj8A84T88 Lonicera japonica HOM05D005838 ORTHO05D007177 7.3e-81 304.3 207 71.5
MELO3C024840.2 Cucumis melo HOM05D005838 ORTHO05D007177 2.1e-80 302.8 212 68.9
Sed0000199 Sechium edule HOM05D005838 ORTHO05D007177 2.1e-80 302.8 212 67.9
FAN06G0860 Fragaria x ananassa HOM05D005838 ORTHO05D007177 4.7e-80 301.6 213 70.9
FAN06G0984 Fragaria x ananassa HOM05D005838 ORTHO05D007177 4.7e-80 301.6 213 70.9
SEGI_05999 Sequoiadendron giganteum HOM05D005838 ORTHO05D007177 8.0e-80 300.8 210 69.5
FAN10G2643 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.4e-79 300.1 213 70.4
FvH4_7g22520 Fragaria vesca HOM05D005838 ORTHO05D007177 2.3e-79 299.3 213 70.4
FAN01G2632 Fragaria x ananassa HOM05D005838 ORTHO05D007177 4.0e-79 298.5 191 73.8
FAN03G0424 Fragaria x ananassa HOM05D005838 ORTHO05D007177 4.0e-79 298.5 191 73.8
FAN01G2297 Fragaria x ananassa HOM05D005838 ORTHO05D007177 6.8e-79 297.7 206 70.4
Cc02_g07820 Coffea canephora HOM05D005838 ORTHO05D007177 8.9e-79 297.4 213 69.0
Glyma.16G058300 Glycine max HOM05D005838 ORTHO05D007177 1.5e-78 296.6 209 68.9
VMungo1383G0749 Vigna mungo HOM05D005838 ORTHO05D007177 1.5e-78 296.6 209 68.4
RcHm_v2.0_Chr1g0367201 Rosa chinensis HOM05D005838 ORTHO05D007177 2.0e-78 296.2 213 69.5
Manes.07G116600 Manihot esculenta HOM05D005838 ORTHO05D007177 3.4e-78 295.4 211 68.7
Rhsim09G0166200 Rhododendron simsii HOM05D005838 ORTHO05D007177 3.4e-78 295.4 195 70.3
CANSAT78G0186 Cannabis sativa HOM05D005838 ORTHO05D007177 5.8e-78 294.7 194 70.1
Lalb_Chr22g0360471 Lupinus albus HOM05D005838 ORTHO05D007177 5.8e-78 294.7 205 70.7
arahy.Tifrunner.gnm1.ann1.5TUK4V Arachis hypogaea HOM05D005838 ORTHO05D007177 7.5e-78 294.3 209 68.9
Ciclev10033314m.g Citrus clementina HOM05D005838 ORTHO05D007177 9.8e-78 293.9 195 70.8
Aa31sc79G70 Aethionema arabicum HOM05D005838 ORTHO05D007177 3.7e-77 292.0 212 67.5
Phvul.001G114700 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 4.9e-77 291.6 209 67.5
TPR.G2804 Trifolium pratense HOM05D005838 ORTHO05D007177 6.4e-77 291.2 209 69.4
Atru.chr12.445 Acer truncatum HOM05D005838 ORTHO05D007177 8.3e-77 290.8 195 69.7
arahy.Tifrunner.gnm1.ann1.YA5U61 Arachis hypogaea HOM05D005838 ORTHO05D007177 1.1e-76 290.4 195 70.8
Ca_24072_v3 Cicer arietinum L. HOM05D005838 ORTHO05D007177 1.1e-76 290.4 209 68.9
vmacro10230 Vaccinium macrocarpon HOM05D005838 ORTHO05D007177 1.1e-76 290.4 195 69.7
MD01G1134500 Malus domestica HOM05D005838 ORTHO05D007177 1.9e-76 289.7 213 66.2
arahy.Tifrunner.gnm1.ann1.9R8UEA Arachis hypogaea HOM05D005838 ORTHO05D007177 2.4e-76 289.3 195 70.3
arahy.Tifrunner.gnm1.ann1.3RZV8E Arachis hypogaea HOM05D005838 ORTHO05D007177 4.1e-76 288.5 195 70.3
Lj1g0024127 Lotus japonicus HOM05D005838 ORTHO05D007177 7.1e-76 287.7 195 69.7
AT3G12530 Arabidopsis thaliana HOM05D005838 ORTHO05D007177 1.2e-75 287.0 212 66.0
Eucgr.J00011 Eucalyptus grandis HOM05D005838 ORTHO05D007177 1.2e-75 287.0 212 67.5
CARHR087030 Cardamine hirsuta HOM05D005838 ORTHO05D007177 1.6e-75 286.6 212 66.0
Ca_13046_v3 Cicer arietinum L. HOM05D006351 ORTHO05D007796 1.6e-75 286.6 195 70.3
AL3G24160 Arabidopsis lyrata HOM05D005838 ORTHO05D007177 2.7e-75 285.8 212 66.0
Oeu064376.1 Olea europaea HOM05D005838 ORTHO05D007177 2.7e-75 285.8 213 67.1
MD07G1199100 Malus domestica HOM05D005838 ORTHO05D007177 6.0e-75 284.6 213 64.8
Prupe.2G235900 Prunus persica HOM05D005838 ORTHO05D007177 7.8e-75 284.3 213 66.2
Sp3g10660 Schrenkiella parvula HOM05D005838 ORTHO05D007177 7.8e-75 284.3 212 65.6
HanXRQChr17g0562051 Helianthus annuus HOM05D005838 ORTHO05D007177 1.0e-74 283.9 209 65.6
MSTRG.287 Avicennia marina HOM05D005838 ORTHO05D007177 2.3e-74 282.7 213 65.7
Potri.010G203600 Populus trichocarpa HOM05D005838 ORTHO05D007177 2.3e-74 282.7 212 66.5
BolC3t16845H Brassica oleracea HOM05D005838 ORTHO05D007177 3.0e-74 282.3 212 65.1
Migut.M01657 Erythranthe guttata HOM05D005838 ORTHO05D007177 3.9e-74 282.0 212 66.0
Sabra10G0157100 Salix brachista HOM05D005838 ORTHO05D007177 3.9e-74 282.0 212 65.6
Lsat_1_v5_gn_1_78580 Lactuca sativa HOM05D005838 ORTHO05D007177 6.6e-74 281.2 210 66.2
SGA_v2.0_scaffold2G01002 Striga asiatica HOM05D005838 ORTHO05D007177 6.6e-74 281.2 213 66.7
TWI34G1817 Tripterygium wilfordii HOM05D005838 ORTHO05D007177 6.6e-74 281.2 212 67.0
Carub.0003s1186 Capsella rubella HOM05D005838 ORTHO05D007177 8.6e-74 280.8 212 65.1
Thhalv10021517m.g Eutrema salsugineum HOM05D005838 ORTHO05D007177 8.6e-74 280.8 212 64.6
BraA03t12920Z Brassica rapa HOM05D005838 ORTHO05D007177 1.9e-73 279.6 212 65.1
C03p45720 Brassica napus HOM05D005838 ORTHO05D007177 5.6e-73 278.1 205 64.9
BcaB04g21071 Brassica carinata HOM05D005838 ORTHO05D007177 7.3e-73 277.7 216 63.9
Medtr7g029455 Medicago truncatula HOM05D005838 ORTHO05D007177 9.5e-73 277.3 215 64.7
Mapoly0001s0197 Marchantia polymorpha HOM05D005838 ORTHO05D007177 2.1e-72 276.2 208 62.0
A03p37670 Brassica napus HOM05D005838 ORTHO05D007177 2.8e-72 275.8 205 64.9
ECA238G0467 Erigeron canadensis HOM05D005838 ORTHO05D007177 2.2e-69 266.2 200 64.5
Solyc05g054430.4 Solanum lycopersicum HOM05D005838 ORTHO05D007177 2.9e-69 265.8 213 63.8
Sopen05g032920 Solanum pennellii HOM05D005838 ORTHO05D007177 2.9e-69 265.8 213 63.8
PGSC0003DMG402023533 Solanum tuberosum HOM05D005838 ORTHO05D007177 2.9e-69 265.8 213 63.8
THA.LOC104827330 Tarenaya hassleriana HOM05D005838 ORTHO05D007177 2.9e-69 265.8 193 66.8
Duzib128G0804 Durio zibethinus HOM05D005838 ORTHO05D007177 4.9e-69 265.0 190 70.0
CAN.G1013.29 Capsicum annuum HOM05D005838 ORTHO05D007177 6.4e-69 264.6 204 64.2
HanXRQChr14g0458031 Helianthus annuus HOM05D005838 ORTHO05D007177 8.3e-69 264.2 193 65.3
DCAR_011703 Daucus carota HOM05D005838 ORTHO05D007177 1.4e-68 263.5 181 69.1
Pp3c24_19790 Physcomitrium patens HOM05D005838 ORTHO05D007177 5.4e-68 261.5 214 59.8
Nitab4.5_0008565g0020 Nicotiana tabacum HOM05D005838 ORTHO05D007177 6.0e-67 258.1 237 57.8
Actinidia13881 Actinidia chinensis HOM05D005838 ORTHO05D007177 4.0e-63 245.4 155 73.5
ECA236G5038 Erigeron canadensis HOM05D005838 ORTHO05D007177 5.2e-63 245.0 185 63.2
SMO358G0240 Selaginella moellendorffii HOM05D005838 ORTHO05D007177 8.9e-63 244.2 172 65.1
Peaxi162Scf00886g00023 Petunia axillaris HOM05D005838 ORTHO05D007177 1.2e-62 243.8 193 63.2
PGR044G1343 Punica granatum HOM05D005838 ORTHO05D007177 2.0e-62 243.0 212 60.8
Nitab4.5_0025932g0010 Nicotiana tabacum HOM05D005838 ORTHO05D007177 5.8e-62 241.5 210 59.5
CBR_g83733 Chara braunii HOM05D005838 ORTHO05D007177 2.1e-56 223.0 167 56.9
Phvul.004G101800 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 4.0e-55 218.8 144 69.4
AagrBONN_evm.TU.Sc2ySwM_117.2288 Anthoceros agrestis HOM05D005838 ORTHO05D007177 3.9e-50 202.2 206 51.0
Potri.008G056200 Populus trichocarpa HOM05D005838 ORTHO05D007177 9.6e-49 197.6 212 53.3
ECA240G3935 Erigeron canadensis HOM05D005838 ORTHO05D007177 1.0e-42 177.6 113 72.6
SalBow6G6757 Salvia bowleyana HOM05D005838 ORTHO05D007177 1.8e-39 166.8 135 65.2
PRCOL_00001833 Prasinoderma coloniale HOM05D005838 ORTHO05D007177 8.4e-37 157.9 186 41.4
ClCG10G009550 Citrullus lanatus HOM05D005838 ORTHO05D007177 6.9e-31 138.3 79 77.2
MCO01G144 Micromonas commoda HOM05D005838 ORTHO05D007177 1.2e-30 137.5 171 43.9
Cre01.g029100 Chlamydomonas reinhardtii HOM05D005838 ORTHO05D007177 2.2e-29 133.3 171 42.7
AagrBONN_evm.TU.Sc2ySwM_368.230 Anthoceros agrestis HOM05D005838 ORTHO05D007177 4.2e-28 129.0 110 51.8
Ah.04g162270 Amaranthus hybridus HOM05D005838 ORTHO05D007177 2.2e-21 106.7 63 69.8
unitig_27.g25062 Utricularia gibba HOM05D005838 ORTHO05D007177 2.1e-19 100.1 105 46.7
Cpa.g.sc1.409 Carica papaya HOM05D005838 ORTHO05D007177 4.6e-19 99.0 88 61.4
BcaC09g48252 Brassica carinata HOM05D000758 ORTHO05D001216 2.3e-18 96.7 178 35.4
Oeu048244.1 Olea europaea HOM05D005838 ORTHO05D007177 9.1e-15 84.7 50 68.0
CSS0016900 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 1.3e-13 80.9 71 52.1
C01p52640 Brassica napus HOM05D005838 ORTHO05D007177 5.0e-13 79.0 59 61.0
BolC1t05204H Brassica oleracea HOM05D005838 ORTHO05D007177 4.7e-11 72.4 55 60.0
BolC5t34206H Brassica oleracea HOM05D005838 ORTHO05D007177 1.4e-10 70.9 83 48.2
C05p55400 Brassica napus HOM05D005838 ORTHO05D007177 6.7e-10 68.6 78 48.7
Dinv18752 Davidia involucrata HOM05D036176 ORTHO05D007177 3.3e-09 66.2 51 62.7
Psat7g263960 Pisum sativum HOM05D005838 ORTHO05D007177 1.3e-08 64.3 61 55.7
Actinidia29229 Actinidia chinensis HOM05D005838 ORTHO05D007177 1.1e-07 61.2 40 70.0
BNapus_Darmor_BZH_scaffold_149p00070 Brassica napus HOM05D005838 ORTHO05D041122 2.4e-07 60.1 135 33.3


User provided reference genes

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