Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO532G0015 Papaver somniferum HOM05D004775 ORTHO05D005351 1.2e-120 436.4 204 100.0
PSO541G5225 Papaver somniferum HOM05D004775 ORTHO05D005351 1.9e-118 429.1 204 97.5
PSO541G4289 Papaver somniferum HOM05D004775 ORTHO05D005351 2.3e-116 422.2 204 97.1
Aqoxy6G00652 Aquilegia oxysepala HOM05D004775 ORTHO05D005351 6.2e-85 317.8 204 73.0
TAR381G0646 Trochodendron aralioides HOM05D004775 ORTHO05D005351 3.7e-82 308.5 204 71.6
TAR625G1011 Trochodendron aralioides HOM05D004775 ORTHO05D005351 7.1e-81 304.3 198 72.7
Nn5g29801 Nelumbo nucifera HOM05D004775 ORTHO05D005351 1.7e-79 299.7 204 70.1
Dinv42587 Davidia involucrata HOM05D004775 ORTHO05D005351 1.1e-78 297.0 204 65.7
Atru.chr13.955 Acer truncatum HOM05D004775 ORTHO05D005351 1.9e-78 296.2 203 66.0
QL12p039787 Quercus lobata HOM05D004775 ORTHO05D005351 5.6e-78 294.7 206 66.0
CiPaw.07G162400 Carya illinoinensis HOM05D004775 ORTHO05D005351 7.3e-78 294.3 204 66.7
LjContig00408g0019215 Lotus japonicus HOM05D004775 ORTHO05D005351 9.6e-78 293.9 200 66.0
Manes.18G057500 Manihot esculenta HOM05D004775 ORTHO05D005351 2.8e-77 292.4 205 65.9
Glyma.14G183500 Glycine max HOM05D004775 ORTHO05D005351 6.2e-77 291.2 200 67.0
TWI36G1537 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 8.1e-77 290.8 204 63.7
Glyma.02G216500 Glycine max HOM05D004775 ORTHO05D005351 1.1e-76 290.4 201 66.7
Actinidia10268 Actinidia chinensis HOM05D004775 ORTHO05D005351 1.8e-76 289.7 204 66.7
Duzib116G0735 Durio zibethinus HOM05D004775 ORTHO05D005351 2.4e-76 289.3 198 65.7
TPR.G27047 Trifolium pratense HOM05D004775 ORTHO05D005351 3.1e-76 288.9 204 64.2
Gohir.A01G125800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 4.0e-76 288.5 204 64.7
RcHm_v2.0_Chr7g0233601 Rosa chinensis HOM05D004775 ORTHO05D005351 4.0e-76 288.5 204 64.7
Gorai.002G138100 Gossypium raimondii HOM05D004775 ORTHO05D005351 5.2e-76 288.1 204 64.7
Duzib093G0042 Durio zibethinus HOM05D004775 ORTHO05D005351 6.8e-76 287.7 204 64.2
TWI56G0975 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 6.8e-76 287.7 209 62.7
CANSAT25G1480 Cannabis sativa HOM05D004775 ORTHO05D005351 1.2e-75 287.0 197 66.0
Gohir.D05G220600 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.5e-75 286.6 195 64.6
MD15G1389500 Malus domestica HOM05D004775 ORTHO05D005351 1.5e-75 286.6 208 63.0
Gohir.D01G113700 Gossypium hirsutum HOM05D004775 ORTHO05D005351 2.0e-75 286.2 204 64.2
COL.COLO4_35296 Corchorus olitorius HOM05D004775 ORTHO05D005351 2.6e-75 285.8 204 62.7
Gohir.A05G216900 Gossypium hirsutum HOM05D004775 ORTHO05D005351 2.6e-75 285.8 195 64.6
Potri.002G109800 Populus trichocarpa HOM05D004775 ORTHO05D005351 2.6e-75 285.8 210 63.3
Prupe.1G538600 Prunus persica HOM05D004775 ORTHO05D005351 2.6e-75 285.8 202 63.9
Thecc.08G074700 Theobroma cacao HOM05D004775 ORTHO05D005351 2.6e-75 285.8 204 62.7
Cc10_g08310 Coffea canephora HOM05D004775 ORTHO05D005351 1.3e-74 283.5 204 61.8
Peaxi162Scf00962g00039 Petunia axillaris HOM05D004775 ORTHO05D005351 1.3e-74 283.5 204 62.7
TWI12G1154 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 1.7e-74 283.1 198 64.1
FAN08G1925 Fragaria x ananassa HOM05D004775 ORTHO05D005351 3.8e-74 282.0 204 63.7
FAN18G1173 Fragaria x ananassa HOM05D004775 ORTHO05D005351 3.8e-74 282.0 204 63.7
Nitab4.5_0018050g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 3.8e-74 282.0 204 63.2
CSS0014871 Camellia sinensis var. sinensis HOM05D004775 ORTHO05D005351 1.1e-73 280.4 205 64.4
CAN.G1104.13 Capsicum annuum HOM05D004775 ORTHO05D005351 1.1e-73 280.4 205 64.4
MELO3C003503.2 Cucumis melo HOM05D004775 ORTHO05D005351 1.4e-73 280.0 205 64.4
PGR042G0432 Punica granatum HOM05D004775 ORTHO05D005351 1.4e-73 280.0 204 60.8
Sc26g0003070 Simmondsia chinensis HOM05D004775 ORTHO05D005351 1.9e-73 279.6 199 62.3
Solyc04g076670.3 Solanum lycopersicum HOM05D004775 ORTHO05D005351 1.9e-73 279.6 196 64.8
Sopen04g030390 Solanum pennellii HOM05D004775 ORTHO05D005351 1.9e-73 279.6 196 64.8
Duzib041G0637 Durio zibethinus HOM05D004775 ORTHO05D005351 2.4e-73 279.3 216 59.7
Hma1.2p1_0125F.1_g058660 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 3.2e-73 278.9 197 67.0
CAN.G723.7 Capsicum annuum HOM05D004775 ORTHO05D005351 4.2e-73 278.5 196 65.3
Ciclev10002525m.g Citrus clementina HOM05D004775 ORTHO05D005351 5.4e-73 278.1 206 62.1
Medtr5g066840 Medicago truncatula HOM05D004775 ORTHO05D005351 7.1e-73 277.7 200 63.0
Gohir.A06G030500 Gossypium hirsutum HOM05D004775 ORTHO05D005351 9.3e-73 277.3 204 60.8
Medtr3g111440 Medicago truncatula HOM05D004775 ORTHO05D005351 9.3e-73 277.3 199 62.8
MSTRG.932 Avicennia marina HOM05D004775 ORTHO05D005351 1.2e-72 276.9 197 66.5
Gorai.010G032800 Gossypium raimondii HOM05D004775 ORTHO05D005351 1.2e-72 276.9 204 60.8
CsaV3_3G048130 Cucumis sativus L. HOM05D004775 ORTHO05D005351 1.6e-72 276.6 205 63.4
Nitab4.5_0003184g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.6e-72 276.6 204 63.2
MSTRG.24993 Avicennia marina HOM05D004775 ORTHO05D005351 6.0e-72 274.6 199 63.3
Gohir.D06G029800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 6.0e-72 274.6 204 60.8
Lalb_Chr17g0344651 Lupinus albus HOM05D004775 ORTHO05D005351 7.8e-72 274.2 195 62.1
Lalb_Chr11g0064841 Lupinus albus HOM05D004775 ORTHO05D005351 1.7e-71 273.1 199 62.3
Gorai.009G227600 Gossypium raimondii HOM05D004775 ORTHO05D005351 2.3e-71 272.7 195 63.6
MD08G1206200 Malus domestica HOM05D004775 ORTHO05D005351 2.3e-71 272.7 213 60.1
FAN04G2969 Fragaria x ananassa HOM05D004775 ORTHO05D005351 3.0e-71 272.3 204 62.3
Sed0023619 Sechium edule HOM05D004775 ORTHO05D005351 3.9e-71 271.9 204 60.8
Ca_15537_v3 Cicer arietinum L. HOM05D000583 ORTHO05D000442 5.1e-71 271.6 198 63.6
Sed0025083 Sechium edule HOM05D004775 ORTHO05D005351 6.6e-71 271.2 209 61.2
Psat2g064440 Pisum sativum HOM05D004775 ORTHO05D005351 8.7e-71 270.8 206 60.2
arahy.Tifrunner.gnm1.ann1.ZY5S91 Arachis hypogaea HOM05D004775 ORTHO05D005351 2.5e-70 269.2 190 65.3
Solyc12g088070.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 3.3e-70 268.9 202 59.9
Sopen12g030090 Solanum pennellii HOM05D004775 ORTHO05D005351 4.3e-70 268.5 202 59.9
Cpa.g.sc177.17 Carica papaya HOM05D004775 ORTHO05D005351 2.8e-69 265.8 201 61.7
Oeu038164.1 Olea europaea HOM05D004775 ORTHO05D005351 2.8e-69 265.8 198 61.6
Ca_05476_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 4.8e-69 265.0 206 60.7
Ca_30556_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 4.8e-69 265.0 206 60.7
DCAR_020031 Daucus carota HOM05D004775 ORTHO05D005351 1.8e-68 263.1 204 57.8
AT1G09920 Arabidopsis thaliana HOM05D004775 ORTHO05D005351 2.6e-67 259.2 188 61.7
Psat0s3268g0200 Pisum sativum HOM05D004775 ORTHO05D005351 2.6e-67 259.2 199 58.8
unitig_8.g4905 Utricularia gibba HOM05D004775 ORTHO05D005351 2.6e-67 259.2 190 64.2
THA.LOC104823690 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 4.4e-67 258.5 194 59.3
Migut.C00072 Erythranthe guttata HOM05D004775 ORTHO05D005351 5.8e-67 258.1 198 61.6
ECA246G4228 Erigeron canadensis HOM05D004775 ORTHO05D005351 7.6e-67 257.7 197 58.4
Carub.0001s0930 Capsella rubella HOM05D004775 ORTHO05D005351 1.3e-66 256.9 191 61.3
Dinv44879 Davidia involucrata HOM05D000583 ORTHO05D000442 3.8e-66 255.4 166 68.1
THA.LOC104816787 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 3.8e-66 255.4 196 60.2
AL1G20520 Arabidopsis lyrata HOM05D004775 ORTHO05D005351 4.9e-66 255.0 188 61.7
CARHR009970 Cardamine hirsuta HOM05D004775 ORTHO05D005351 6.4e-66 254.6 188 61.7
TPR.G12363 Trifolium pratense HOM05D004775 ORTHO05D005351 6.4e-66 254.6 205 58.5
Sabra02G0086400 Salix brachista HOM05D004775 ORTHO05D005351 5.4e-65 251.5 276 46.7
Aa31LG1G4980 Aethionema arabicum HOM05D000583 ORTHO05D000442 7.1e-65 251.1 195 57.4
ECA247G3351 Erigeron canadensis HOM05D004775 ORTHO05D005351 7.1e-65 251.1 197 57.9
Thhalv10008829m.g Eutrema salsugineum HOM05D004775 ORTHO05D005351 2.1e-64 249.6 203 58.1
BolC5t29556H Brassica oleracea HOM05D004775 ORTHO05D005351 3.5e-64 248.8 196 58.7
ATR0800G163 Amborella trichopoda HOM05D004775 ORTHO05D005351 1.0e-63 247.3 148 73.0
unitig_578.g16108 Utricularia gibba HOM05D004775 ORTHO05D005351 1.7e-63 246.5 183 66.7
BcaC05g24832 Brassica carinata HOM05D004775 ORTHO05D005351 2.3e-63 246.1 196 57.1
A08p34290 Brassica napus HOM05D004775 ORTHO05D005351 3.0e-63 245.7 186 60.8
BraA08t35340Z Brassica rapa HOM05D004775 ORTHO05D005351 3.0e-63 245.7 186 61.3
vmacro21362 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 3.0e-63 245.7 277 48.0
BolC8t48959H Brassica oleracea HOM05D004775 ORTHO05D005351 3.9e-63 245.4 186 61.3
BcaC07g38533 Brassica carinata HOM05D004775 ORTHO05D005351 6.6e-63 244.6 186 61.3
Sp1g08560 Schrenkiella parvula HOM05D004775 ORTHO05D005351 6.6e-63 244.6 194 58.2
GSVIVG01009216001 Vitis vinifera HOM05D004775 ORTHO05D005351 3.3e-62 242.3 211 56.4
CAN.G1104.12 Capsicum annuum HOM05D004775 ORTHO05D005351 4.3e-62 241.9 201 55.2
Phvul.009G145000 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 9.6e-62 240.7 204 57.8
Lsat_1_v5_gn_6_107340 Lactuca sativa HOM05D004775 ORTHO05D005351 2.1e-61 239.6 179 58.7
Actinidia19256 Actinidia chinensis HOM05D004775 ORTHO05D005351 8.1e-61 237.7 147 70.7
HanXRQChr02g0046001 Helianthus annuus HOM05D004775 ORTHO05D005351 1.1e-60 237.3 198 55.1
C05p08040 Brassica napus HOM05D004775 ORTHO05D005351 3.1e-60 235.7 181 60.8
GSVIVG01009218001 Vitis vinifera HOM05D004775 ORTHO05D005351 4.0e-60 235.3 213 55.9
C08p13270 Brassica napus HOM05D004775 ORTHO05D005351 6.9e-60 234.6 205 56.6
SEGI_14572 Sequoiadendron giganteum HOM05D004775 ORTHO05D005351 1.3e-58 230.3 207 51.7
A06p06630 Brassica napus HOM05D004775 ORTHO05D005351 1.7e-58 229.9 181 59.1
BraA06t23877Z Brassica rapa HOM05D004775 ORTHO05D005351 1.7e-58 229.9 181 59.1
Glyma.06G092700 Glycine max HOM05D004775 ORTHO05D005351 4.2e-57 225.3 204 54.9
CDE01G0193 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 5.5e-57 224.9 199 55.3
CDE02G4408 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 5.5e-57 224.9 199 54.8
Solyc12g088060.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 7.1e-57 224.6 144 65.3
Zm00001eb017320 Zea mays HOM05D004775 ORTHO05D005351 7.9e-56 221.1 189 54.0
MBI16_g12296_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 1.8e-55 219.9 158 63.9
PGSC0003DMG402002053 Solanum tuberosum HOM05D004775 ORTHO05D005351 2.3e-55 219.5 204 50.0
Lsat_1_v5_gn_1_840 Lactuca sativa HOM05D004775 ORTHO05D005351 2.5e-54 216.1 210 49.5
EL10Ac1g00475 Beta vulgaris HOM05D004775 ORTHO05D005351 1.3e-53 213.8 202 51.5
Zm00001eb110680 Zea mays HOM05D004775 ORTHO05D005351 1.1e-52 210.7 190 47.9
ClCG11G014720 Citrullus lanatus HOM05D004775 ORTHO05D005351 1.8e-52 209.9 161 62.7
Nitab4.5_0000354g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 2.4e-52 209.5 178 55.6
Nitab4.5_0000885g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 2.4e-52 209.5 187 53.5
Eucgr.F00443 Eucalyptus grandis HOM05D004775 ORTHO05D005351 5.3e-52 208.4 207 48.8
Os03g0356652 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 1.2e-51 207.2 198 47.5
Phvul.008G183600 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 3.4e-51 205.7 154 64.3
Mapoly0004s0283 Marchantia polymorpha HOM05D004775 ORTHO05D005351 7.6e-51 204.5 205 48.8
Nn1g05655 Nelumbo nucifera HOM05D004775 ORTHO05D005351 4.9e-50 201.8 108 80.6
Zm00001eb394470 Zea mays HOM05D004775 ORTHO05D005351 1.1e-49 200.7 194 51.5
Os07g0657500 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 3.2e-49 199.1 182 47.8
VMungo1309G0719 Vigna mungo HOM05D004775 ORTHO05D005351 2.1e-48 196.4 182 53.3
Hund17253 Selenicereus undatus HOM05D004775 ORTHO05D005351 1.8e-47 193.4 171 53.8
Hma1.2p1_0010F.1_g006440 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 6.7e-47 191.4 141 65.2
HanXRQChr10g0277731 Helianthus annuus HOM05D004775 ORTHO05D005351 5.7e-46 188.3 158 55.1
HanXRQChr05g0163501 Helianthus annuus HOM05D004775 ORTHO05D005351 2.4e-44 183.0 153 52.9
FvH4_5g34100 Fragaria vesca HOM05D004775 ORTHO05D005351 3.1e-44 182.6 144 61.1
Manes.12G122400 Manihot esculenta HOM05D004775 ORTHO05D005351 3.1e-44 182.6 198 47.0
unitig_37.g13069 Utricularia gibba HOM05D000316 ORTHO05D005351 8.5e-42 174.5 189 49.2
VMungo0647G0779 Vigna mungo HOM05D004775 ORTHO05D005351 4.6e-40 168.7 138 60.1
Haze_22493 Corylus avellana HOM05D004775 ORTHO05D005351 1.8e-39 166.8 192 47.4
Sopen12g030080 Solanum pennellii HOM05D000583 ORTHO05D000442 2.2e-37 159.8 144 51.4
BraA09t41874Z Brassica rapa HOM05D000348 ORTHO05D000244 2.8e-37 159.5 196 43.9
BcaC07g41856 Brassica carinata HOM05D004775 ORTHO05D005351 4.8e-37 158.7 196 43.9
BolC8t52458H Brassica oleracea HOM05D000348 ORTHO05D000244 4.8e-37 158.7 196 43.9
AUR62019121 Chenopodium quinoa HOM05D004775 ORTHO05D005351 6.9e-36 154.8 199 38.7
BcaB03g13545 Brassica carinata HOM05D004775 ORTHO05D005351 7.7e-35 151.4 132 55.3
AUR62014379 Chenopodium quinoa HOM05D004775 ORTHO05D005351 2.2e-34 149.8 199 38.2
MBI05_g43456_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 3.9e-31 139.0 87 65.5
MBI10_g33158_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 2.2e-29 133.3 86 65.1
SGA_v2.0_scaffold74G24544 Striga asiatica HOM05D004775 ORTHO05D005351 6.3e-29 131.7 186 39.8
vmacro22764 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 1.8e-15 87.0 68 58.8
Dinv36973 Davidia involucrata HOM05D004775 ORTHO05D005351 2.6e-14 83.2 160 38.8
CDE07G0871 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 1.8e-12 77.0 63 49.2
SHI24912 Sapria himalayana HOM05D006348 ORTHO05D008261 7.0e-12 75.1 164 27.4
Medtr3g099560 Medicago truncatula HOM05D004775 ORTHO05D005351 4.2e-09 65.9 39 66.7
MBI15_g39225_MAGBIO Magnolia biondii HOM05D022081 ORTHO05D005351 7.2e-09 65.1 43 58.1
Glyma.04G091000 Glycine max HOM05D004775 ORTHO05D005351 4.0e-07 59.3 52 61.5
MBI13_g26620_MAGBIO Magnolia biondii HOM05D022081 ORTHO05D005351 4.0e-07 59.3 40 57.5
MBI05_g43673_MAGBIO Magnolia biondii HOM05D022081 ORTHO05D005351 5.2e-07 58.9 41 53.7
Zm00001eb329620 Zea mays HOM05D004775 ORTHO05D005351 6.8e-07 58.5 92 33.7
MBI10_g16409_MAGBIO Magnolia biondii HOM05D022081 ORTHO05D005351 2.6e-06 56.6 42 50.0
MBI10_g23013_MAGBIO Magnolia biondii HOM05D022081 ORTHO05D005351 4.4e-06 55.8 41 51.2


User provided reference genes

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