Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 1.1e-281 972.6 476 100.0
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 1.1e-273 946.0 476 97.1
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 8.4e-226 786.9 471 81.1
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 1.0e-215 753.4 472 76.3
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 1.3e-215 753.1 470 77.7
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 1.3e-215 753.1 470 77.2
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 8.1e-213 743.8 471 75.4
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 2.6e-211 738.8 470 74.9
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 3.4e-211 738.4 477 75.5
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 4.5e-211 738.0 467 75.8
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 5.8e-211 737.6 471 74.7
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 7.6e-211 737.3 471 76.4
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 1.3e-210 736.5 470 75.1
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 1.7e-210 736.1 473 75.5
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 3.8e-210 734.9 474 74.5
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 6.5e-210 734.2 470 74.7
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 8.4e-210 733.8 471 74.9
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 1.4e-209 733.0 470 74.7
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 2.5e-209 732.3 469 74.2
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 3.2e-209 731.9 472 75.4
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 4.2e-209 731.5 472 73.5
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 5.5e-209 731.1 470 74.5
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 9.3e-209 730.3 471 74.7
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 1.2e-208 729.9 471 74.3
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.6e-208 729.6 471 75.4
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 2.7e-208 728.8 469 74.4
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 3.5e-208 728.4 471 75.6
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 6.0e-208 727.6 476 75.4
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 7.9e-208 727.2 465 74.4
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 7.9e-208 727.2 460 77.4
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.0e-207 726.9 465 74.2
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 1.0e-207 726.9 468 73.9
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 3.0e-207 725.3 474 73.2
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 6.7e-207 724.2 465 74.0
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.1e-206 723.4 471 74.1
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 4.3e-206 721.5 471 72.2
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 9.6e-206 720.3 470 74.0
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 1.6e-205 719.5 469 75.7
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 1.6e-205 719.5 470 73.0
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 2.8e-205 718.8 470 74.0
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 3.7e-205 718.4 469 72.5
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 4.8e-205 718.0 470 72.8
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 1.4e-204 716.5 468 72.2
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 1.8e-204 716.1 471 74.3
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 5.3e-204 714.5 469 74.2
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 6.9e-204 714.1 470 72.1
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 3.8e-202 708.4 474 71.7
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 6.5e-202 707.6 469 70.8
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 1.9e-201 706.1 451 74.7
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 4.2e-201 704.9 471 72.2
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 4.6e-200 701.4 468 72.0
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 6.1e-200 701.0 470 72.1
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 1.1e-198 696.8 467 71.5
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 2.5e-198 695.7 467 71.9
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 4.1e-196 688.3 452 73.7
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 3.4e-195 685.3 470 71.7
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 1.7e-194 682.9 467 70.7
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 1.7e-194 682.9 467 70.9
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 3.8e-194 681.8 439 73.3
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 6.5e-194 681.0 467 70.7
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 1.4e-193 679.9 465 71.6
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 1.4e-193 679.9 444 72.5
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 7.2e-193 677.6 546 62.1
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 1.2e-192 676.8 468 70.5
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 2.7e-192 675.6 426 76.5
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 6.7e-191 671.0 472 69.7
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 6.7e-191 671.0 470 69.8
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 1.1e-190 670.2 468 69.9
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 1.1e-190 670.2 468 69.9
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 1.1e-190 670.2 470 70.0
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 3.3e-190 668.7 465 70.5
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 3.3e-190 668.7 470 69.6
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 3.3e-190 668.7 471 70.1
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 7.4e-190 667.5 470 69.4
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 2.2e-189 666.0 468 70.1
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 4.8e-189 664.8 470 69.4
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 2.4e-188 662.5 468 69.7
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 4.1e-188 661.8 431 74.2
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 5.3e-188 661.4 470 69.6
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 9.1e-188 660.6 468 69.4
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 1.2e-187 660.2 473 68.5
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 1.5e-187 659.8 497 65.4
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 1.5e-187 659.8 470 68.9
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 2.0e-187 659.4 470 68.9
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 2.6e-187 659.1 470 69.1
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 3.4e-187 658.7 472 68.9
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 3.4e-187 658.7 470 69.4
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 1.0e-186 657.1 471 69.0
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 6.5e-186 654.4 467 69.4
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 6.5e-186 654.4 471 66.7
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 1.1e-185 653.7 468 68.6
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.1e-184 649.4 514 61.9
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 4.7e-184 648.3 471 69.4
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 1.3e-181 640.2 427 72.4
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 2.8e-181 639.0 469 67.4
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 2.8e-181 639.0 472 64.4
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 4.8e-181 638.3 471 66.7
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 1.1e-180 637.1 468 67.1
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.8e-180 636.3 403 75.4
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 1.2e-179 633.6 472 66.5
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 3.2e-177 625.5 476 66.4
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 1.6e-176 623.2 475 66.3
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 4.0e-175 618.6 528 60.8
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 3.7e-173 612.1 440 68.0
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 9.1e-172 607.4 409 71.1
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 1.4e-164 583.6 368 73.9
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 2.4e-164 582.8 478 60.0
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 5.4e-164 581.6 513 57.1
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 7.0e-164 581.3 471 64.5
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 1.2e-163 580.5 469 63.8
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 1.0e-159 567.4 489 59.3
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.1e-156 557.4 408 67.2
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 3.1e-156 555.8 350 74.6
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 7.7e-155 551.2 468 61.1
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 5.7e-150 535.0 363 71.1
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 4.1e-148 528.9 472 57.6
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 2.1e-144 516.5 304 81.2
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.3e-143 513.1 471 57.5
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 1.7e-138 496.9 475 53.1
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 4.7e-136 488.8 546 47.6
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.4e-119 434.1 477 50.7
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 8.7e-114 414.8 270 73.0
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 5.1e-106 389.0 328 62.8
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 1.6e-104 384.0 243 75.7
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 2.1e-91 340.5 482 42.5
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 1.6e-88 330.9 379 45.9
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 4.2e-84 316.2 285 60.7
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 9.7e-81 305.1 201 71.6
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 3.8e-77 293.1 488 34.6
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 7.2e-76 288.9 274 57.3
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 3.3e-73 280.0 511 36.4
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 6.3e-72 275.8 266 51.9
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 1.3e-69 268.1 461 38.2
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.2e-68 263.5 248 56.0
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 3.1e-63 246.9 458 37.3
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.3e-53 214.9 180 60.0
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 4.7e-51 206.5 174 60.3
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 5.7e-49 199.5 288 43.1
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.7e-48 196.8 111 82.0
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 3.1e-47 193.7 206 52.4
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 3.1e-47 193.7 210 50.0
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 4.1e-47 193.4 111 80.2
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.6e-46 191.4 111 79.3
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 6.5e-45 186.0 198 51.0
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 1.7e-40 171.4 107 74.8
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 7.8e-38 162.5 111 70.3
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 4.7e-35 153.3 123 60.2
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 1.3e-32 145.2 107 68.2
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 8.3e-32 142.5 122 59.0
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.4e-31 141.7 339 31.0
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 1.8e-31 141.4 116 61.2
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 3.3e-28 130.6 91 65.9
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.1e-27 127.9 67 91.0
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 1.2e-22 112.1 125 53.6
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 3.6e-19 100.5 64 75.0
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 7.1e-15 86.3 92 51.1
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 8.1e-11 72.8 58 58.6
SEGI_01378 Sequoiadendron giganteum HOM05D000678 ORTHO05D001709 6.8e-10 69.7 41 82.9
vmacro12020 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 1.4e-07 62.0 39 76.9
vmacro15157 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 3.2e-07 60.8 39 74.4


User provided reference genes

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