Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 4.3e-85 318.2 186 100.0
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 1.1e-80 303.5 186 96.2
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 7.0e-51 204.5 186 69.4
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 1.3e-49 200.3 186 68.8
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 9.4e-40 167.5 196 55.1
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 8.0e-39 164.5 190 56.8
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 4.0e-38 162.2 192 54.2
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 3.3e-37 159.1 192 57.3
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 4.8e-36 155.2 190 61.6
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 1.1e-35 154.1 193 58.0
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 9.1e-35 151.0 189 60.8
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 2.7e-34 149.4 209 53.1
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 7.7e-34 147.9 202 53.5
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 3.8e-33 145.6 196 52.0
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 6.5e-33 144.8 196 50.0
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 1.9e-32 143.3 210 52.4
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 3.2e-32 142.5 187 57.2
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 4.2e-32 142.1 193 47.7
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 2.1e-31 139.8 194 52.6
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 2.7e-31 139.4 208 52.9
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 2.3e-30 136.3 136 58.1
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 5.2e-30 135.2 139 56.8
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 1.2e-29 134.0 196 48.5
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 2.6e-29 132.9 146 56.8
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 3.4e-29 132.5 192 54.7
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 7.5e-29 131.3 200 50.5
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 7.5e-29 131.3 191 52.4
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 9.8e-29 131.0 202 52.0
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 1.7e-28 130.2 119 63.9
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 6.3e-28 128.3 199 52.3
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 6.3e-28 128.3 130 58.5
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 8.3e-28 127.9 198 47.0
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 8.3e-28 127.9 135 55.6
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 8.3e-28 127.9 206 49.5
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 1.1e-27 127.5 200 47.0
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 1.1e-27 127.5 191 50.8
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 1.4e-27 127.1 193 48.2
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 1.4e-27 127.1 136 55.1
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 1.4e-27 127.1 199 48.2
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 1.4e-27 127.1 141 55.3
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 2.4e-27 126.3 137 56.2
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 2.4e-27 126.3 206 44.2
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 4.1e-27 125.6 137 55.5
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 5.4e-27 125.2 197 52.3
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 5.4e-27 125.2 138 55.1
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.2e-26 124.0 200 49.5
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 1.2e-26 124.0 185 45.9
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 1.2e-26 124.0 135 54.1
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 1.6e-26 123.6 201 50.7
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 2.7e-26 122.9 141 51.8
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 3.5e-26 122.5 135 54.1
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 4.5e-26 122.1 136 53.7
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 5.9e-26 121.7 204 42.6
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 7.7e-26 121.3 198 49.5
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 1.7e-25 120.2 198 49.0
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 2.3e-25 119.8 138 51.4
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 2.3e-25 119.8 211 49.8
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 2.9e-25 119.4 136 53.7
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 3.8e-25 119.0 141 53.9
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 5.0e-25 118.6 202 48.5
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 8.6e-25 117.9 145 51.7
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 1.1e-24 117.5 205 46.3
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 1.5e-24 117.1 142 50.7
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.5e-24 117.1 131 52.7
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 1.5e-24 117.1 204 41.7
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 1.9e-24 116.7 144 48.6
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 3.3e-24 115.9 190 44.2
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 3.3e-24 115.9 187 49.2
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 5.5e-24 115.2 185 42.7
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 5.5e-24 115.2 125 57.6
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 1.2e-23 114.0 218 47.7
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 1.2e-23 114.0 193 47.2
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 1.6e-23 113.6 139 48.9
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 2.1e-23 113.2 206 40.3
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 2.8e-23 112.8 145 50.3
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 2.8e-23 112.8 207 48.8
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 3.6e-23 112.5 142 50.7
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 4.7e-23 112.1 196 52.0
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 4.7e-23 112.1 207 46.9
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 8.0e-23 111.3 176 48.3
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 1.0e-22 110.9 141 50.4
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 1.4e-22 110.5 175 48.6
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 1.8e-22 110.2 192 49.0
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 2.3e-22 109.8 139 49.6
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 4.0e-22 109.0 101 61.4
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 5.2e-22 108.6 193 46.1
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 6.8e-22 108.2 174 48.3
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 8.9e-22 107.8 133 51.1
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 8.9e-22 107.8 139 49.6
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 3.4e-21 105.9 182 44.0
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 3.4e-21 105.9 136 52.2
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 4.4e-21 105.5 133 50.4
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 4.4e-21 105.5 194 50.5
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 5.7e-21 105.1 187 39.0
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 5.7e-21 105.1 200 42.0
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 7.5e-21 104.8 140 49.3
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 9.8e-21 104.4 189 48.7
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 9.8e-21 104.4 205 46.3
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 9.8e-21 104.4 116 52.6
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 9.8e-21 104.4 184 38.6
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 1.3e-20 104.0 143 48.3
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 1.7e-20 103.6 151 52.3
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 2.8e-20 102.8 143 47.6
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 6.3e-20 101.7 208 46.2
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 6.3e-20 101.7 204 45.1
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 8.3e-20 101.3 140 46.4
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 1.8e-19 100.1 218 39.0
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 2.4e-19 99.8 95 54.7
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 2.4e-19 99.8 95 54.7
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 3.1e-19 99.4 93 54.8
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 4.1e-19 99.0 182 41.2
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 4.1e-19 99.0 182 41.2
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 4.1e-19 99.0 182 41.2
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 5.4e-19 98.6 154 45.5
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 7.0e-19 98.2 142 45.1
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 1.6e-18 97.1 137 44.5
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 2.7e-18 96.3 188 43.1
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 2.7e-18 96.3 188 43.1
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 7.8e-18 94.7 121 46.3
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 1.3e-17 94.0 101 50.5
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 2.9e-17 92.8 130 44.6
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 2.9e-17 92.8 94 51.1
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 2.9e-17 92.8 90 51.1
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 2.9e-17 92.8 90 51.1
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 2.9e-17 92.8 189 43.4
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 2.9e-17 92.8 130 45.4
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 3.9e-17 92.4 188 42.0
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 6.6e-17 91.7 190 37.9
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 1.1e-16 90.9 143 42.7
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 1.1e-16 90.9 82 53.7
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 2.5e-16 89.7 123 45.5
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 3.3e-16 89.4 92 53.3
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 9.5e-16 87.8 74 60.8
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 3.6e-15 85.9 243 39.1
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 6.1e-15 85.1 196 45.4
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 1.4e-14 84.0 73 58.9
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 3.4e-13 79.3 56 73.2
SalBow7G1175 Salvia bowleyana HOM05D004771 ORTHO05D005565 1.7e-12 77.0 150 38.7
Glyma.10G254400 Glycine max HOM05D004771 ORTHO05D005565 2.2e-12 76.6 127 43.3
Gohir.D01G171500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 2.9e-12 76.3 61 65.6
Pp3c4_10090 Physcomitrium patens HOM05D004771 ORTHO05D005565 2.9e-12 76.3 136 39.0
Nitab4.5_0001458g0040 Nicotiana tabacum HOM05D004771 ORTHO05D005565 4.9e-12 75.5 54 70.4
Mapoly0060s0029 Marchantia polymorpha HOM05D004771 ORTHO05D005565 6.4e-12 75.1 133 41.4
arahy.Tifrunner.gnm1.ann1.P0FJQ9 Arachis hypogaea HOM05D004771 ORTHO05D005565 1.9e-11 73.6 107 54.2
Oeu012349.1 Olea europaea HOM05D004771 ORTHO05D005565 1.9e-11 73.6 71 59.2
Rhsim02G0173400 Rhododendron simsii HOM05D004771 ORTHO05D005565 1.2e-10 70.9 59 59.3
arahy.Tifrunner.gnm1.ann1.S1TJ9S Arachis hypogaea HOM05D004771 ORTHO05D005565 6.0e-10 68.6 119 42.0
arahy.Tifrunner.gnm1.ann1.MQV2C0 Arachis hypogaea HOM05D004771 ORTHO05D005565 1.0e-09 67.8 109 53.2
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 1.0e-09 67.8 53 66.0
CARHR045930 Cardamine hirsuta HOM05D004771 ORTHO05D005565 8.6e-09 64.7 134 35.8
SMO244G0085 Selaginella moellendorffii HOM05D004771 ORTHO05D005565 4.3e-08 62.4 99 41.4


User provided reference genes

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