Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO528G0152 Papaver somniferum HOM05D004603 ORTHO05D005244 2.5e-96 355.5 189 100.0
PSO170G0256 Papaver somniferum HOM05D004603 ORTHO05D005244 1.6e-87 326.2 189 92.6
PSO063G4454 Papaver somniferum HOM05D004603 ORTHO05D005244 1.1e-54 217.2 177 66.7
PSO017G3894 Papaver somniferum HOM05D004603 ORTHO05D005244 2.2e-52 209.5 169 68.0
TAR053G0004 Trochodendron aralioides HOM05D004603 ORTHO05D005244 8.1e-39 164.5 160 53.8
Haze_03089 Corylus avellana HOM05D004603 ORTHO05D005244 5.8e-37 158.3 188 48.4
Cfa010862 Carpinus fangiana HOM05D004603 ORTHO05D005244 3.8e-36 155.6 188 47.9
TAR369G0595 Trochodendron aralioides HOM05D004603 ORTHO05D005244 7.1e-35 151.4 192 44.8
QL04p013733 Quercus lobata HOM05D004603 ORTHO05D005244 1.6e-34 150.2 194 45.9
Rhsim07G0062700 Rhododendron simsii HOM05D004603 ORTHO05D005244 1.0e-33 147.5 183 48.1
Gohir.D04G071400 Gossypium hirsutum HOM05D004603 ORTHO05D005244 1.7e-33 146.7 187 46.0
Gorai.012G080400 Gossypium raimondii HOM05D004603 ORTHO05D005244 3.0e-33 146.0 187 46.0
CiPaw.13G010800 Carya illinoinensis HOM05D004603 ORTHO05D005244 5.1e-33 145.2 160 47.5
Nitab4.5_0013777g0030 Nicotiana tabacum HOM05D004603 ORTHO05D005244 6.6e-33 144.8 206 41.3
vmacro13728 Vaccinium macrocarpon HOM05D004603 ORTHO05D005244 6.6e-33 144.8 180 46.1
Dinv32050 Davidia involucrata HOM05D004603 ORTHO05D005244 1.1e-32 144.1 190 45.8
Nitab4.5_0000316g0040 Nicotiana tabacum HOM05D004603 ORTHO05D005244 1.9e-32 143.3 206 40.8
Atru.chr11.2495 Acer truncatum HOM05D004603 ORTHO05D005244 3.3e-32 142.5 196 43.9
Potri.001G024000 Populus trichocarpa HOM05D004603 ORTHO05D005244 3.3e-32 142.5 160 46.9
Cpa.g.sc197.6 Carica papaya HOM05D004603 ORTHO05D005244 5.6e-32 141.7 187 45.5
CAN.G745.15 Capsicum annuum HOM05D004603 ORTHO05D005244 1.3e-31 140.6 201 41.8
Phvul.010G125900 Phaseolus vulgaris HOM05D004603 ORTHO05D005244 1.3e-31 140.6 165 44.2
Aqoxy2G00300 Aquilegia oxysepala HOM05D004603 ORTHO05D005244 1.6e-31 140.2 178 46.6
Sabra01G0018000 Salix brachista HOM05D004603 ORTHO05D005244 1.6e-31 140.2 160 46.2
Hma1.2p1_0902F.1_g234830 Hydrangea macrophylla HOM05D004603 ORTHO05D005244 2.1e-31 139.8 179 46.4
Atru.chr11.2466 Acer truncatum HOM05D004603 ORTHO05D005244 2.8e-31 139.4 196 42.9
GSVIVG01022405001 Vitis vinifera HOM05D004603 ORTHO05D005244 2.8e-31 139.4 193 44.6
PGR031G2747 Punica granatum HOM05D004603 ORTHO05D005244 4.8e-31 138.7 180 43.9
arahy.Tifrunner.gnm1.ann1.S7XKIQ Arachis hypogaea HOM05D004603 ORTHO05D005244 6.2e-31 138.3 189 43.4
COL.COLO4_25832 Corchorus olitorius HOM05D004603 ORTHO05D005244 6.2e-31 138.3 188 46.3
Duzib114G1022 Durio zibethinus HOM05D004603 ORTHO05D005244 6.2e-31 138.3 184 43.5
arahy.Tifrunner.gnm1.ann1.30UV9I Arachis hypogaea HOM05D004603 ORTHO05D005244 1.4e-30 137.1 189 42.9
Ca_14312_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 1.8e-30 136.7 167 43.7
Ciclev10032728m.g Citrus clementina HOM05D004603 ORTHO05D005244 2.4e-30 136.3 178 44.9
Potri.003G201500 Populus trichocarpa HOM05D004603 ORTHO05D005244 4.0e-30 135.6 175 45.1
Thecc.10G006000 Theobroma cacao HOM05D004603 ORTHO05D005244 4.0e-30 135.6 178 43.8
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 9.0e-30 134.4 189 42.3
Lalb_Chr19g0138841 Lupinus albus HOM05D004603 ORTHO05D005244 9.0e-30 134.4 157 46.5
Eucgr.G03257 Eucalyptus grandis HOM05D004603 ORTHO05D005244 1.5e-29 133.7 164 46.3
VMungo1127G1982 Vigna mungo HOM05D004603 ORTHO05D005244 2.6e-29 132.9 175 42.3
Peaxi162Scf00047g02136 Petunia axillaris HOM05D004603 ORTHO05D005244 3.4e-29 132.5 200 40.0
Solyc01g068450.4 Solanum lycopersicum HOM05D004603 ORTHO05D005244 3.4e-29 132.5 201 40.3
TWI63G1183 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 3.4e-29 132.5 151 48.3
RcHm_v2.0_Chr1g0319701 Rosa chinensis HOM05D004603 ORTHO05D005244 4.5e-29 132.1 187 43.3
MD00G1188600 Malus domestica HOM05D004603 ORTHO05D005244 5.8e-29 131.7 189 42.9
Sopen01g030410 Solanum pennellii HOM05D004603 ORTHO05D005244 5.8e-29 131.7 201 40.3
Ca_20912_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 7.6e-29 131.3 179 43.6
Cc02_g29120 Coffea canephora HOM05D004603 ORTHO05D005244 1.7e-28 130.2 181 42.5
Lj3g0020788 Lotus japonicus HOM05D004603 ORTHO05D005244 1.7e-28 130.2 179 44.1
MBI13_g05166_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 1.7e-28 130.2 138 50.0
MD02G1294600 Malus domestica HOM05D004603 ORTHO05D005244 2.2e-28 129.8 189 42.9
TPR.G3881 Trifolium pratense HOM05D004603 ORTHO05D005244 2.2e-28 129.8 182 43.4
TWI38G0287 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 3.8e-28 129.0 151 45.0
Peaxi162Scf00309g00324 Petunia axillaris HOM05D004603 ORTHO05D005244 4.9e-28 128.6 164 43.3
MELO3C012448.2 Cucumis melo HOM05D004603 ORTHO05D005244 6.4e-28 128.3 188 42.0
TPR.G30506 Trifolium pratense HOM05D004603 ORTHO05D005244 6.4e-28 128.3 175 41.7
MSTRG.20534 Avicennia marina HOM05D004603 ORTHO05D005244 8.4e-28 127.9 187 40.1
COL.COLO4_29439 Corchorus olitorius HOM05D004603 ORTHO05D005244 8.4e-28 127.9 177 43.5
FAN01G0231 Fragaria x ananassa HOM05D000001 ORTHO05D009083 8.4e-28 127.9 179 42.5
CANSAT35G1099 Cannabis sativa HOM05D004603 ORTHO05D005244 1.1e-27 127.5 188 41.0
CsaV3_5G036510 Cucumis sativus L. HOM05D004603 ORTHO05D005244 1.1e-27 127.5 188 42.0
CiPaw.14G006000 Carya illinoinensis HOM05D004603 ORTHO05D005244 1.9e-27 126.7 185 41.1
Medtr4g071040 Medicago truncatula HOM05D004603 ORTHO05D005244 1.9e-27 126.7 170 42.9
Sed0010230 Sechium edule HOM05D004603 ORTHO05D005244 2.4e-27 126.3 184 42.4
FAN03G3254 Fragaria x ananassa HOM05D004603 ORTHO05D005244 3.2e-27 125.9 186 41.9
FAN06G0782 Fragaria x ananassa HOM05D000001 ORTHO05D009083 3.2e-27 125.9 184 41.3
FAN10G0154 Fragaria x ananassa HOM05D004603 ORTHO05D005244 3.2e-27 125.9 179 41.9
Duzib128G1390 Durio zibethinus HOM05D004603 ORTHO05D005244 4.2e-27 125.6 159 42.1
Glyma.12G039500 Glycine max HOM05D004603 ORTHO05D005244 4.2e-27 125.6 189 40.2
Psat7g182960 Pisum sativum HOM05D004603 ORTHO05D005244 5.4e-27 125.2 177 40.1
VMungo1127G0155 Vigna mungo HOM05D004603 ORTHO05D005244 9.3e-27 124.4 175 40.0
SalBow5G1211 Salvia bowleyana HOM05D004603 ORTHO05D005244 1.2e-26 124.0 186 39.8
DCAR_031824 Daucus carota HOM05D004603 ORTHO05D005244 4.6e-26 122.1 190 38.4
Glyma.11G113600 Glycine max HOM05D004603 ORTHO05D005244 4.6e-26 122.1 187 39.6
Actinidia30721 Actinidia chinensis HOM05D004603 ORTHO05D005244 2.3e-25 119.8 135 45.9
SGA_v2.0_scaffold119G32802 Striga asiatica HOM05D004603 ORTHO05D005244 2.3e-25 119.8 188 39.4
Lj9A646T46 Lonicera japonica HOM05D004603 ORTHO05D005244 3.0e-25 119.4 181 39.2
Manes.11G002700 Manihot esculenta HOM05D004603 ORTHO05D005244 3.9e-25 119.0 182 41.8
SalBow5G1267 Salvia bowleyana HOM05D004603 ORTHO05D005244 3.9e-25 119.0 186 39.2
CDE08G1561 Ceratophyllum demersum HOM05D004603 ORTHO05D005244 5.1e-25 118.6 153 41.8
SalBow1G4372 Salvia bowleyana HOM05D004603 ORTHO05D005244 6.7e-25 118.2 186 40.3
Sed0015753 Sechium edule HOM05D004603 ORTHO05D005244 8.7e-25 117.9 184 41.3
DCAR_024211 Daucus carota HOM05D004603 ORTHO05D005244 1.1e-24 117.5 193 38.9
PGSC0003DMG400023243 Solanum tuberosum HOM05D004603 ORTHO05D005244 2.5e-24 116.3 168 41.7
Aa31LG6G8480 Aethionema arabicum HOM05D004603 ORTHO05D005244 5.6e-24 115.2 178 37.6
Prupe.2G029400 Prunus persica HOM05D004603 ORTHO05D005244 5.6e-24 115.2 190 38.4
DCAR_009134 Daucus carota HOM05D004603 ORTHO05D005244 1.3e-23 114.0 192 38.0
Migut.B01205 Erythranthe guttata HOM05D004603 ORTHO05D005244 1.6e-23 113.6 144 43.8
HanXRQChr15g0493861 Helianthus annuus HOM05D004603 ORTHO05D005244 2.1e-23 113.2 165 40.6
Lj1A1244T16 Lonicera japonica HOM05D004603 ORTHO05D005244 2.8e-23 112.8 158 41.1
SEGI_29054 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 6.2e-23 111.7 166 39.2
BcaB04g17864 Brassica carinata HOM05D004603 ORTHO05D005244 1.4e-22 110.5 149 41.6
AUR62037226 Chenopodium quinoa HOM05D004603 ORTHO05D005244 1.4e-22 110.5 151 41.7
Atru.chr11.786 Acer truncatum HOM05D004603 ORTHO05D005244 1.8e-22 110.2 141 45.4
AUR62026828 Chenopodium quinoa HOM05D004603 ORTHO05D005244 1.8e-22 110.2 151 41.7
HPP92_010478 Vanilla planifolia HOM05D004603 ORTHO05D005244 3.1e-22 109.4 157 39.5
Os10g0580500 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 5.3e-22 108.6 140 40.7
BolC8t47853H Brassica oleracea HOM05D000499 ORTHO05D002825 6.9e-22 108.2 148 41.2
BcaC07g37535 Brassica carinata HOM05D004603 ORTHO05D005244 1.2e-21 107.5 154 39.6
CSS0012283 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 1.2e-21 107.5 138 44.9
Os01g0950800 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 1.2e-21 107.5 176 35.8
Hund13330 Selenicereus undatus HOM05D004603 ORTHO05D005244 1.2e-21 107.5 170 38.2
SEGI_15222 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 1.2e-21 107.5 178 39.3
CSS0050281 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 1.5e-21 107.1 138 44.9
MD07G1031900 Malus domestica HOM05D004603 ORTHO05D005244 2.0e-21 106.7 142 43.7
BraA08t32841Z Brassica rapa HOM05D000499 ORTHO05D002825 3.4e-21 105.9 148 40.5
A08p08230 Brassica napus HOM05D000499 ORTHO05D002825 4.5e-21 105.5 154 39.0
Ciclev10017990m.g Citrus clementina HOM05D004603 ORTHO05D005244 5.8e-21 105.1 156 42.3
THA.LOC104819124 Tarenaya hassleriana HOM05D004603 ORTHO05D005244 5.8e-21 105.1 137 46.7
Mapoly0122s0047 Marchantia polymorpha HOM05D004603 ORTHO05D005244 1.3e-20 104.0 125 40.0
Lj2g0001718 Lotus japonicus HOM05D004603 ORTHO05D005244 2.9e-20 102.8 159 41.5
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 4.9e-20 102.1 183 38.3
Carub.0001s3260 Capsella rubella HOM05D004603 ORTHO05D005244 1.9e-19 100.1 178 35.4
AT3G15750 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 7.1e-19 98.2 174 36.8
Sc10g0004260 Simmondsia chinensis HOM05D004603 ORTHO05D005244 7.1e-19 98.2 173 35.8
Carub.0007s3712 Capsella rubella HOM05D004603 ORTHO05D005244 1.2e-18 97.4 186 36.6
Gohir.A05G333100 Gossypium hirsutum HOM05D004603 ORTHO05D005244 1.2e-18 97.4 119 44.5
EL10Ac2g02852 Beta vulgaris HOM05D004603 ORTHO05D005244 1.6e-18 97.1 168 38.7
ECA248G3322 Erigeron canadensis HOM05D004603 ORTHO05D005244 2.1e-18 96.7 140 40.7
AL1G49060 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 3.5e-18 95.9 181 35.4
Zm00001eb140990 Zea mays HOM05D004603 ORTHO05D005244 6.0e-18 95.1 192 37.0
ATR0721G140 Amborella trichopoda HOM05D004603 ORTHO05D005244 1.0e-17 94.4 125 40.0
Sp1g29690 Schrenkiella parvula HOM05D004603 ORTHO05D005244 3.9e-17 92.4 191 32.5
BcaB07g33112 Brassica carinata HOM05D004603 ORTHO05D005244 5.1e-17 92.0 157 33.8
ClCG05G020790 Citrullus lanatus HOM05D004603 ORTHO05D005244 6.7e-17 91.7 270 30.0
AL7G44820 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 1.1e-16 90.9 148 37.8
C06p11480 Brassica napus HOM05D004603 ORTHO05D005244 1.1e-16 90.9 175 33.7
Ah.12g065100 Amaranthus hybridus HOM05D004603 ORTHO05D005244 1.9e-16 90.1 171 34.5
BcaC08g43772 Brassica carinata HOM05D004603 ORTHO05D005244 1.9e-16 90.1 176 34.1
Zm00001eb363050 Zea mays HOM05D004603 ORTHO05D005244 1.9e-16 90.1 156 37.8
Pp3c5_22730 Physcomitrium patens HOM05D004603 ORTHO05D005244 2.5e-16 89.7 163 33.7
AT1G34570 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 4.3e-16 89.0 187 34.8
Lsat_1_v5_gn_1_97861 Lactuca sativa HOM05D004603 ORTHO05D005244 7.4e-16 88.2 100 45.0
Actinidia21527 Actinidia chinensis HOM05D004603 ORTHO05D005244 1.3e-15 87.4 186 34.4
Thhalv10009671m.g Eutrema salsugineum HOM05D004603 ORTHO05D005244 2.1e-15 86.7 129 39.5
Sp7g17090 Schrenkiella parvula HOM05D004603 ORTHO05D005244 3.7e-15 85.9 146 35.6
MBI13_g05162_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 4.8e-15 85.5 183 36.1
Oeu062071.1 Olea europaea HOM05D004603 ORTHO05D005244 8.2e-15 84.7 128 43.8
AagrBONN_evm.TU.Sc2ySwM_117.3931 Anthoceros agrestis HOM05D004603 ORTHO05D005244 1.4e-14 84.0 100 48.0
HanXRQChr13g0394011 Helianthus annuus HOM05D004603 ORTHO05D005244 1.2e-13 80.9 138 34.1
ATR0217G019 Amborella trichopoda HOM05D004603 ORTHO05D005244 3.4e-13 79.3 134 33.6
CDE09G0498 Ceratophyllum demersum HOM05D002215 ORTHO05D002238 4.5e-13 79.0 72 50.0
CAN.G1571.2 Capsicum annuum HOM05D004603 ORTHO05D005244 2.2e-12 76.6 90 43.3
FvH4_5g29020 Fragaria vesca HOM05D004603 ORTHO05D005244 1.1e-11 74.3 97 38.1
FAN18G3634 Fragaria x ananassa HOM05D004603 ORTHO05D005244 4.2e-11 72.4 89 40.4
CARHR033890 Cardamine hirsuta HOM05D004603 ORTHO05D005244 5.5e-11 72.0 143 37.1
SMO170G0061 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 2.3e-09 66.6 112 41.1
RcHm_v2.0_Chr7g0218601 Rosa chinensis HOM05D004603 ORTHO05D005244 1.9e-08 63.5 89 40.4
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 2.5e-08 63.2 119 31.9
A01p20230 Brassica napus HOM05D017989 ORTHO05D021787 1.6e-07 60.5 109 36.7
QL02p069618 Quercus lobata HOM05D004603 ORTHO05D005244 4.8e-07 58.9 92 40.2
Sabra03G0149000 Salix brachista HOM05D004603 ORTHO05D005244 4.8e-07 58.9 98 39.8
AagrBONN_evm.TU.Sc2ySwM_368.759 Anthoceros agrestis HOM05D004603 ORTHO05D005244 6.3e-07 58.5 86 40.7
FAN13G2986 Fragaria x ananassa HOM05D004603 ORTHO05D005244 6.3e-07 58.5 99 35.4
Cre09.g388245 Chlamydomonas reinhardtii HOM05D004603 ORTHO05D005244 1.8e-06 57.0 85 38.8
ECA248G0603 Erigeron canadensis HOM05D004603 ORTHO05D005244 3.1e-06 56.2 79 38.0


User provided reference genes

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