Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 2168.3 1080 100.0
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1697.6 1084 77.2
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1637.5 1087 74.1
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1633.6 1090 74.9
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1625.1 1084 74.6
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1622.8 1084 74.0
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1617.4 1082 73.0
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1617.1 1084 74.4
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1601.3 1085 72.6
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1599.7 1085 72.7
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1589.3 1089 72.8
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1588.2 1083 72.7
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1587.8 1087 72.0
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1582.4 1085 71.4
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1580.8 1082 71.3
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1574.3 1085 72.3
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1573.9 1087 71.6
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1572.4 1084 72.0
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1571.2 1084 71.3
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1571.2 1085 71.1
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1570.8 1080 71.3
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1568.5 1084 71.6
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1568.5 1084 71.5
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1566.6 1085 71.4
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1559.7 1088 71.1
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1559.3 1011 76.9
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1557.0 1112 69.7
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1555.8 1083 70.5
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1551.6 1086 70.0
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1550.0 1083 70.2
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1549.6 1084 70.5
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1547.7 1085 70.4
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1543.1 1086 70.5
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1541.6 1088 70.2
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1540.8 1083 70.2
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1540.4 1086 70.0
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1536.9 1084 70.1
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1533.9 1070 71.1
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1531.5 1081 69.2
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1531.5 1085 70.8
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1531.5 1082 69.1
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1528.5 1080 69.5
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1526.9 1084 69.6
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1525.8 1086 69.1
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1525.8 1082 69.5
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1524.2 1086 69.2
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1521.5 1081 69.5
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1519.6 1086 68.7
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1518.1 1086 68.3
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1516.1 1091 68.8
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1514.2 1083 69.2
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1514.2 1083 69.9
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1513.8 1084 69.8
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1513.0 1083 68.5
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1512.7 1167 65.4
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1512.7 1094 68.4
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1511.1 1082 68.6
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1510.0 1082 68.7
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1509.6 1082 68.4
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1508.8 1082 69.2
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1508.4 1089 69.4
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1506.1 1086 69.0
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1505.3 1084 68.5
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1503.8 1165 65.2
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1503.4 1083 67.9
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1503.0 1087 68.0
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1502.6 1085 67.7
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1502.6 1085 67.7
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1499.6 1097 67.4
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1498.8 1087 68.8
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1498.0 1110 67.3
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1498.0 1095 67.7
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1493.4 1085 67.6
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1493.4 1087 68.6
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1491.5 1087 68.7
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1488.8 1083 67.8
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1487.6 1084 67.8
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1486.5 1108 67.5
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1486.5 1083 67.5
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1474.1 1055 69.1
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1472.2 1000 72.3
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1470.7 1089 67.3
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1466.4 1105 66.5
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1463.4 1082 67.6
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1456.0 1151 63.8
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1455.7 1094 66.5
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1449.1 1083 66.6
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1448.7 1083 65.7
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1445.6 1106 64.7
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1438.3 1082 66.3
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1436.4 1068 67.1
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1434.1 1082 66.5
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1432.5 1082 66.3
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1431.4 978 72.4
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1427.9 1082 66.3
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1426.4 1082 66.1
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1426.4 1082 66.2
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1426.0 1080 64.8
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1425.2 1082 65.9
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1425.2 1082 65.9
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1422.5 1082 65.2
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1421.0 1082 65.6
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1420.6 1082 65.6
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1419.8 1082 65.5
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1418.7 1112 63.6
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1411.7 1105 63.3
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1409.4 1088 66.0
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1384.0 994 68.9
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1366.3 1081 64.1
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1358.2 1004 68.8
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1284.6 1076 62.3
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1167.5 789 73.4
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1151.3 1091 54.2
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1147.1 1084 53.1
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1131.7 1086 53.0
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1126.7 1126 51.2
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1118.6 1088 52.4
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1103.6 688 78.9
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1093.6 713 75.9
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 3.7e-311 1071.6 670 77.9
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 1.2e-309 1066.6 759 69.3
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 9.9e-299 1030.4 851 60.0
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 4.9e-282 974.9 817 61.6
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 1.2e-248 864.0 613 71.6
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 1.3e-245 854.0 960 48.3
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 7.7e-243 844.7 632 65.7
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 8.8e-231 804.7 633 65.9
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 5.2e-223 778.9 498 75.7
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 4.6e-203 712.6 974 44.1
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 6.4e-173 612.5 608 52.8
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 3.2e-164 583.6 429 70.6
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 1.8e-135 488.0 302 77.2
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 4.5e-126 456.8 312 73.1
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 7.5e-121 439.5 390 59.5
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 3.4e-73 281.2 302 50.0
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 1.2e-67 262.7 241 56.8
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 6.9e-66 256.9 205 64.4
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 9.0e-58 229.9 129 80.6
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 9.9e-49 199.9 138 67.4
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 9.0e-34 150.2 160 51.2
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 1.6e-30 139.4 138 54.3
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 4.8e-27 127.9 156 45.5
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 1.1e-26 126.7 105 59.0
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 6.9e-26 124.0 72 80.6
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 3.6e-22 111.7 97 58.8
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 6.7e-21 107.5 83 60.2
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 4.7e-14 84.7 70 61.4
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 3.9e-13 81.6 49 75.5
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 2.6e-12 79.0 136 37.5
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 9.7e-12 77.0 68 51.5
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 5.0e-08 64.7 115 36.5
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 6.1e-06 57.8 39 66.7
Ciclev10003824m.g Citrus clementina HOM05D002380 ORTHO05D152301 8.0e-06 57.4 48 66.7


User provided reference genes

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