Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 1.5e-89 332.8 167 100.0
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 8.6e-77 290.4 167 87.4
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 5.3e-58 228.0 129 83.7
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 9.0e-58 227.3 131 81.7
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 1.1e-55 220.3 126 81.0
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 1.5e-52 209.9 126 77.0
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 5.5e-47 191.4 120 72.5
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 6.0e-46 188.0 120 70.8
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 8.7e-45 184.1 128 65.6
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 1.9e-44 183.0 124 66.1
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 2.5e-44 182.6 124 66.1
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 2.5e-44 182.6 123 67.5
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 4.3e-44 181.8 125 64.0
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 4.3e-44 181.8 125 64.0
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 4.3e-44 181.8 125 64.0
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 4.3e-44 181.8 125 64.0
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 4.3e-44 181.8 125 64.0
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 4.3e-44 181.8 126 64.3
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 4.3e-44 181.8 123 67.5
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 5.7e-44 181.4 124 65.3
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 7.4e-44 181.0 120 68.3
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 1.6e-43 179.9 124 64.5
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 2.2e-43 179.5 124 62.9
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 3.7e-43 178.7 118 67.8
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 4.8e-43 178.3 133 60.2
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 6.3e-43 177.9 120 65.8
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 6.3e-43 177.9 120 65.0
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 1.4e-42 176.8 126 62.7
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.8e-42 176.4 125 60.8
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 2.4e-42 176.0 125 64.0
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 3.1e-42 175.6 122 67.2
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 3.1e-42 175.6 127 63.0
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 4.1e-42 175.3 123 63.4
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 4.1e-42 175.3 120 62.5
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 4.1e-42 175.3 126 61.9
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 6.9e-42 174.5 123 62.6
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 9.0e-42 174.1 126 64.3
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 9.0e-42 174.1 117 65.8
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 1.2e-41 173.7 120 65.0
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 1.5e-41 173.3 123 64.2
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 1.5e-41 173.3 126 64.3
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 1.5e-41 173.3 126 61.9
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 2.0e-41 172.9 128 62.5
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 2.0e-41 172.9 123 64.2
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 2.6e-41 172.6 118 65.3
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 3.4e-41 172.2 123 62.6
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 3.4e-41 172.2 120 65.8
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 3.4e-41 172.2 126 63.5
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 4.5e-41 171.8 117 64.1
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 5.9e-41 171.4 122 63.9
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 5.9e-41 171.4 120 65.0
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 5.9e-41 171.4 125 60.0
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 7.6e-41 171.0 117 65.0
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 1.0e-40 170.6 126 62.7
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 1.0e-40 170.6 120 64.2
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 1.0e-40 170.6 118 61.9
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 1.3e-40 170.2 124 61.3
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.3e-40 170.2 120 63.3
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 1.3e-40 170.2 120 62.5
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 1.3e-40 170.2 118 61.9
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 1.3e-40 170.2 121 62.0
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 1.3e-40 170.2 120 61.7
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 1.7e-40 169.9 131 57.3
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 1.7e-40 169.9 126 61.9
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 1.7e-40 169.9 120 64.2
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 1.7e-40 169.9 126 59.5
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 2.2e-40 169.5 121 59.5
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 2.9e-40 169.1 120 62.5
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 2.9e-40 169.1 139 57.6
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 3.8e-40 168.7 141 54.6
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 3.8e-40 168.7 141 54.6
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 3.8e-40 168.7 141 54.6
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 3.8e-40 168.7 126 62.7
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 5.0e-40 168.3 124 61.3
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 6.5e-40 167.9 118 61.0
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 8.5e-40 167.5 117 66.7
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 1.4e-39 166.8 116 67.2
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 1.9e-39 166.4 123 61.0
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 3.2e-39 165.6 120 60.8
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 3.2e-39 165.6 132 56.8
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 5.5e-39 164.9 133 57.9
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 5.5e-39 164.9 131 58.8
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 7.2e-39 164.5 120 60.0
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 9.3e-39 164.1 118 61.9
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 9.3e-39 164.1 120 61.7
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 1.2e-38 163.7 126 59.5
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 1.6e-38 163.3 117 61.5
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 2.7e-38 162.5 121 57.9
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 3.6e-38 162.2 117 61.5
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 3.6e-38 162.2 117 61.5
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 4.6e-38 161.8 124 58.1
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 4.6e-38 161.8 128 61.7
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 7.9e-38 161.0 120 57.5
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 7.9e-38 161.0 129 56.6
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 1.0e-37 160.6 113 65.5
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 1.0e-37 160.6 121 55.4
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 1.4e-37 160.2 118 62.7
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 1.4e-37 160.2 123 58.5
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.8e-37 159.8 127 62.2
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 1.8e-37 159.8 128 60.2
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 1.8e-37 159.8 128 60.2
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 1.8e-37 159.8 120 57.5
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.8e-37 159.8 136 54.4
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 1.8e-37 159.8 118 59.3
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 2.3e-37 159.5 131 54.2
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 2.3e-37 159.5 127 59.8
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 3.0e-37 159.1 126 54.8
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 5.1e-37 158.3 118 57.6
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 5.1e-37 158.3 118 57.6
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 5.1e-37 158.3 126 55.6
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 6.7e-37 157.9 125 60.0
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 6.7e-37 157.9 117 60.7
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 6.7e-37 157.9 133 56.4
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 6.7e-37 157.9 132 53.8
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 8.8e-37 157.5 124 56.5
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 8.8e-37 157.5 126 57.1
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 1.5e-36 156.8 133 53.4
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 1.5e-36 156.8 120 58.3
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 2.5e-36 156.0 126 54.8
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 2.5e-36 156.0 123 59.3
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 3.3e-36 155.6 116 60.3
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 5.7e-36 154.8 120 58.3
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 7.4e-36 154.5 124 58.1
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 9.7e-36 154.1 120 53.3
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 1.3e-35 153.7 118 55.9
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 1.3e-35 153.7 130 53.8
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 1.3e-35 153.7 130 53.8
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 1.3e-35 153.7 126 55.6
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 1.3e-35 153.7 129 52.7
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 1.7e-35 153.3 117 58.1
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 2.8e-35 152.5 132 53.8
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 2.8e-35 152.5 124 53.2
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 3.7e-35 152.1 123 56.1
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 3.7e-35 152.1 122 56.6
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 1.4e-34 150.2 123 53.7
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 4.1e-34 148.7 115 58.3
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 6.9e-34 147.9 113 62.8
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 9.1e-34 147.5 122 54.1
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 9.1e-34 147.5 123 52.8
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 9.1e-34 147.5 128 54.7
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.2e-33 147.1 107 62.6
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 1.2e-33 147.1 119 55.5
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 2.0e-33 146.4 110 60.9
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 2.6e-33 146.0 136 47.8
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 1.3e-32 143.7 120 53.3
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 2.9e-32 142.5 135 51.9
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 3.8e-32 142.1 135 52.6
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 3.8e-32 142.1 125 56.0
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 8.5e-32 141.0 116 53.4
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.5e-31 139.4 104 60.6
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 9.4e-31 137.5 91 70.3
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 2.1e-30 136.3 120 54.2
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 1.4e-29 133.7 119 50.4
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 2.0e-28 129.8 132 51.5
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 3.3e-28 129.0 139 45.3
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 7.4e-28 127.9 129 52.7
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 1.4e-26 123.6 133 45.1
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 3.2e-23 112.5 101 52.5
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 2.4e-18 96.3 60 61.7
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 2.6e-17 92.8 70 58.6
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 3.8e-16 89.0 54 72.2
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 6.5e-16 88.2 110 40.9
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.1e-15 87.4 131 39.7
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 2.5e-15 86.3 62 58.1
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 2.7e-14 82.8 71 59.2
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 2.7e-14 82.8 81 53.1
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 3.6e-14 82.4 64 56.2
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 3.0e-13 79.3 60 58.3
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 3.0e-13 79.3 60 58.3
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 5.2e-13 78.6 73 52.1
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.5e-12 77.0 53 62.3
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 4.4e-12 75.5 64 53.1
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 5.7e-12 75.1 66 53.0
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 4.1e-10 68.9 52 61.5
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 4.5e-09 65.5 63 50.8
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 4.5e-09 65.5 60 50.0
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 2.9e-08 62.8 60 53.3


User provided reference genes

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