Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 2.1e-74 282.3 146 100.0
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 5.4e-67 257.7 146 93.2
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 1.6e-42 176.4 102 88.2
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 1.8e-41 172.9 102 86.3
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 2.5e-35 152.5 108 72.2
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 2.3e-33 146.0 85 80.0
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 3.0e-33 145.6 86 81.4
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 6.7e-33 144.4 89 77.5
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 6.7e-33 144.4 87 79.3
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 8.8e-33 144.1 90 76.7
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 1.1e-32 143.7 81 85.2
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 1.9e-32 142.9 84 81.0
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 2.5e-32 142.5 85 80.0
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 2.5e-32 142.5 102 67.6
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 3.3e-32 142.1 87 78.2
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 3.3e-32 142.1 86 80.2
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 3.3e-32 142.1 86 80.2
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 3.3e-32 142.1 86 80.2
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 4.3e-32 141.7 88 78.4
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 4.3e-32 141.7 98 69.4
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 4.3e-32 141.7 88 78.4
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 4.3e-32 141.7 95 73.7
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 4.3e-32 141.7 95 73.7
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 5.7e-32 141.4 103 72.8
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 5.7e-32 141.4 86 77.9
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 5.7e-32 141.4 86 77.9
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 5.7e-32 141.4 105 69.5
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 5.7e-32 141.4 113 67.3
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 5.7e-32 141.4 85 80.0
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 5.7e-32 141.4 87 79.3
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 9.7e-32 140.6 87 77.0
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 9.7e-32 140.6 111 66.7
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.3e-31 140.2 85 78.8
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 1.3e-31 140.2 111 66.7
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 1.7e-31 139.8 116 65.5
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 2.2e-31 139.4 86 77.9
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 2.8e-31 139.0 87 74.7
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 2.8e-31 139.0 87 74.7
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 2.8e-31 139.0 87 74.7
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 2.8e-31 139.0 116 65.5
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 2.8e-31 139.0 86 77.9
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 3.7e-31 138.7 85 77.6
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 4.8e-31 138.3 85 77.6
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 4.8e-31 138.3 105 70.5
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 6.3e-31 137.9 87 75.9
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 6.3e-31 137.9 100 68.0
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 6.3e-31 137.9 87 77.0
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 8.2e-31 137.5 103 67.0
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 1.1e-30 137.1 87 75.9
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 1.1e-30 137.1 87 74.7
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 1.1e-30 137.1 107 65.4
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 1.4e-30 136.7 86 76.7
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 1.8e-30 136.3 85 75.3
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 1.8e-30 136.3 100 68.0
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 2.4e-30 136.0 104 66.3
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 3.1e-30 135.6 94 73.4
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 5.3e-30 134.8 87 75.9
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 6.9e-30 134.4 129 56.6
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 9.1e-30 134.0 86 75.6
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 9.1e-30 134.0 89 76.4
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 9.1e-30 134.0 87 74.7
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 9.1e-30 134.0 100 67.0
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 9.1e-30 134.0 100 67.0
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 9.1e-30 134.0 100 67.0
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 9.1e-30 134.0 96 71.9
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 1.2e-29 133.7 103 66.0
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 1.2e-29 133.7 103 66.0
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 1.2e-29 133.7 85 76.5
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.2e-29 133.7 86 75.6
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 2.0e-29 132.9 90 72.2
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 2.0e-29 132.9 96 71.9
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 2.6e-29 132.5 104 63.5
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.6e-29 132.5 100 66.0
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 2.6e-29 132.5 100 66.0
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 3.4e-29 132.1 92 71.7
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 3.4e-29 132.1 105 64.8
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 3.4e-29 132.1 104 65.4
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 3.4e-29 132.1 96 71.9
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 3.4e-29 132.1 92 69.6
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 3.4e-29 132.1 87 72.4
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 3.4e-29 132.1 104 63.5
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 4.5e-29 131.7 96 69.8
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 4.5e-29 131.7 85 74.1
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 4.5e-29 131.7 90 72.2
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 5.9e-29 131.3 96 69.8
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 5.9e-29 131.3 89 73.0
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 5.9e-29 131.3 75 82.7
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 5.9e-29 131.3 108 63.0
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 1.0e-28 130.6 101 65.3
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 1.0e-28 130.6 87 75.9
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.0e-28 130.6 88 71.6
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 1.0e-28 130.6 103 66.0
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 1.0e-28 130.6 112 63.4
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 1.3e-28 130.2 113 62.8
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 1.3e-28 130.2 96 70.8
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 1.3e-28 130.2 88 75.0
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 1.3e-28 130.2 87 71.3
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 1.3e-28 130.2 90 72.2
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 1.7e-28 129.8 87 74.7
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 2.2e-28 129.4 101 64.4
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 2.9e-28 129.0 88 70.5
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 2.9e-28 129.0 84 73.8
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 3.8e-28 128.6 113 61.1
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 6.5e-28 127.9 84 72.6
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 8.5e-28 127.5 85 69.4
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 8.5e-28 127.5 81 70.4
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 1.4e-27 126.7 100 62.0
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.9e-27 126.3 113 60.2
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 4.2e-27 125.2 89 68.5
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 4.2e-27 125.2 112 59.8
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 4.2e-27 125.2 113 56.6
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 9.4e-27 124.0 82 73.2
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 1.6e-26 123.2 132 51.5
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 2.1e-26 122.9 85 68.2
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 7.9e-26 120.9 102 60.8
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.8e-25 119.8 82 67.1
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 5.1e-25 118.2 84 69.0
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 6.7e-25 117.9 95 64.2
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 6.7e-25 117.9 82 65.9
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 7.4e-24 114.4 170 42.9
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.3e-23 113.6 82 64.6
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 3.7e-23 112.1 76 73.7
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 6.3e-23 111.3 86 64.0
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 1.1e-22 110.5 85 61.2
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 7.0e-22 107.8 92 60.9
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 2.0e-21 106.3 85 62.4
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 2.0e-21 106.3 87 62.1
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 3.4e-21 105.5 100 55.0
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 5.9e-21 104.8 94 60.6
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.7e-20 103.2 107 54.2
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 1.7e-20 103.2 85 61.2
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 2.2e-20 102.8 87 65.5
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 2.9e-20 102.4 108 53.7
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 8.5e-20 100.9 83 62.7
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 2.1e-18 96.3 74 66.2
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 3.6e-18 95.5 72 66.7
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 3.6e-18 95.5 72 66.7
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 3.6e-18 95.5 59 76.3
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 6.1e-18 94.7 84 60.7
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 1.4e-17 93.6 78 64.1
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 3.9e-17 92.0 73 63.0
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 7.4e-16 87.8 62 71.0
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 2.8e-15 85.9 70 61.4
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 1.1e-14 84.0 60 71.7
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 2.4e-14 82.8 69 56.5
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 4.1e-14 82.0 73 58.9
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 5.3e-14 81.6 89 48.3
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 1.6e-13 80.1 79 48.1
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 2.6e-13 79.3 51 72.5
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 3.5e-13 79.0 54 70.4
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 2.2e-12 76.3 56 62.5
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 1.1e-11 73.9 63 60.3
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 5.5e-11 71.6 71 49.3
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 6.1e-10 68.2 72 51.4
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 1.4e-09 67.0 56 57.1
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 1.4e-09 67.0 63 52.4
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.5e-08 63.5 46 65.2
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 2.6e-08 62.8 65 46.2
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 2.6e-08 62.8 65 46.2
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 5.7e-08 61.6 52 55.8
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 9.7e-08 60.8 49 65.3
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 1.8e-06 56.6 68 47.1


User provided reference genes

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