Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO507G0015 Papaver somniferum HOM05D004164 ORTHO05D004891 2.2e-123 445.7 232 100.0
PSO832G2156 Papaver somniferum HOM05D004164 ORTHO05D004891 2.9e-107 392.1 216 94.4
PSO507G0030 Papaver somniferum HOM05D004164 ORTHO05D004891 2.2e-102 375.9 216 88.9
PSO832G1962 Papaver somniferum HOM05D004164 ORTHO05D004891 1.4e-101 373.2 216 88.4
PSO832G4194 Papaver somniferum HOM05D004164 ORTHO05D004891 1.2e-97 360.1 216 86.6
PSO210G6256 Papaver somniferum HOM05D004164 ORTHO05D004891 1.4e-96 356.7 216 84.3
PSO507G0017 Papaver somniferum HOM05D004164 ORTHO05D004891 1.8e-96 356.3 216 85.6
Nn4g25427 Nelumbo nucifera HOM05D004164 ORTHO05D004891 3.1e-93 345.5 216 81.9
PSO210G5660 Papaver somniferum HOM05D004164 ORTHO05D004891 1.7e-91 339.7 216 79.6
PSO761G0590 Papaver somniferum HOM05D004164 ORTHO05D004891 1.9e-90 336.3 216 78.7
TAR365G1146 Trochodendron aralioides HOM05D004164 ORTHO05D004891 8.3e-86 320.9 216 74.5
Nn3g21861 Nelumbo nucifera HOM05D004164 ORTHO05D004891 3.2e-85 318.9 216 73.6
PSO063G3797 Papaver somniferum HOM05D004164 ORTHO05D004891 5.9e-84 314.7 216 74.5
PSO832G0925 Papaver somniferum HOM05D004164 ORTHO05D004891 7.8e-84 314.3 210 73.8
Aqoxy2G03733 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 3.3e-82 308.9 213 73.2
PSO782G1386 Papaver somniferum HOM05D004164 ORTHO05D004891 7.3e-82 307.8 211 74.9
MBI18_g40410_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 4.0e-80 302.0 216 73.6
PSO173G0010 Papaver somniferum HOM05D004164 ORTHO05D004891 7.5e-79 297.7 216 67.6
PSO173G0166 Papaver somniferum HOM05D004164 ORTHO05D004891 7.5e-79 297.7 216 67.6
PSO761G0410 Papaver somniferum HOM05D004164 ORTHO05D004891 3.3e-74 282.3 216 69.4
PSO781G0333 Papaver somniferum HOM05D004164 ORTHO05D004891 1.5e-71 273.5 216 64.4
PSO761G0549 Papaver somniferum HOM05D004164 ORTHO05D004891 6.4e-70 268.1 228 60.1
Pp3c2_200 Physcomitrium patens HOM05D004164 ORTHO05D004891 3.1e-64 249.2 213 58.2
MBI18_g36466_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 4.0e-64 248.8 216 60.2
PSO210G2683 Papaver somniferum HOM05D004164 ORTHO05D004891 6.8e-64 248.1 216 59.3
Thhalv10004559m.g Eutrema salsugineum HOM05D004164 ORTHO05D004891 8.4e-62 241.1 219 56.6
Aa31LG1G17650 Aethionema arabicum HOM05D004164 ORTHO05D004891 1.1e-61 240.7 219 55.7
MELO3C018623.2 Cucumis melo HOM05D004164 ORTHO05D004891 4.1e-61 238.8 216 55.1
Gohir.D12G015900 Gossypium hirsutum HOM05D004164 ORTHO05D004891 4.1e-61 238.8 219 56.2
Gorai.008G016000 Gossypium raimondii HOM05D004164 ORTHO05D004891 5.4e-61 238.4 219 56.2
Actinidia24002 Actinidia chinensis HOM05D004164 ORTHO05D004891 9.2e-61 237.7 216 57.4
AL8G41570 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 1.2e-60 237.3 215 56.3
Manes.07G033800 Manihot esculenta HOM05D004164 ORTHO05D004891 1.2e-60 237.3 216 56.9
Hma1.2p1_0784F.1_g217100 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 1.6e-60 236.9 216 56.9
Gohir.A12G015600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 2.1e-60 236.5 219 56.2
TPR.G10321 Trifolium pratense HOM05D004164 ORTHO05D004891 2.7e-60 236.1 216 56.5
Aqoxy6G02071 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 3.5e-60 235.7 216 56.5
AL8G41600 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 3.5e-60 235.7 215 55.8
Lj4g0000280 Lotus japonicus HOM05D004164 ORTHO05D004891 4.6e-60 235.3 217 57.1
Sed0011830 Sechium edule HOM05D004164 ORTHO05D004891 4.6e-60 235.3 216 55.1
arahy.Tifrunner.gnm1.ann1.XH6BES Arachis hypogaea HOM05D004164 ORTHO05D004891 6.0e-60 235.0 216 56.5
A06p30940 Brassica napus HOM05D004164 ORTHO05D004891 6.0e-60 235.0 219 55.3
BraA06t26033Z Brassica rapa HOM05D004164 ORTHO05D004891 6.0e-60 235.0 219 55.3
THA.LOC104799917 Tarenaya hassleriana HOM05D004164 ORTHO05D004891 6.0e-60 235.0 219 54.8
Lj6g0021052 Lotus japonicus HOM05D004164 ORTHO05D004891 7.8e-60 234.6 216 56.9
Sp2g27310 Schrenkiella parvula HOM05D004164 ORTHO05D004891 7.8e-60 234.6 219 55.7
Duzib132G1201 Durio zibethinus HOM05D004164 ORTHO05D004891 1.0e-59 234.2 217 56.2
PGR042G3604 Punica granatum HOM05D004164 ORTHO05D004891 1.0e-59 234.2 212 56.6
CSS0002795 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 1.3e-59 233.8 212 57.5
CSS0040430 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 1.3e-59 233.8 212 57.5
CARHR278160 Cardamine hirsuta HOM05D004164 ORTHO05D004891 1.3e-59 233.8 219 55.3
CsaV3_7G006720 Cucumis sativus L. HOM05D004164 ORTHO05D004891 1.3e-59 233.8 216 54.2
AT5G64250 Arabidopsis thaliana HOM05D004164 ORTHO05D004891 2.3e-59 233.0 215 56.3
BcaC01g02680 Brassica carinata HOM05D004164 ORTHO05D004891 2.3e-59 233.0 219 55.3
C03p62030 Brassica napus HOM05D004164 ORTHO05D004891 2.3e-59 233.0 219 55.3
BolC3t18463H Brassica oleracea HOM05D004164 ORTHO05D004891 2.3e-59 233.0 219 55.3
BcaB02g09775 Brassica carinata HOM05D004164 ORTHO05D004891 3.0e-59 232.6 219 54.3
Carub.0008s2504 Capsella rubella HOM05D004164 ORTHO05D004891 3.9e-59 232.3 219 54.8
MD05G1043200 Malus domestica HOM05D004164 ORTHO05D004891 5.1e-59 231.9 218 54.6
Thecc.02G135100 Theobroma cacao HOM05D004164 ORTHO05D004891 5.1e-59 231.9 217 55.3
HanXRQChr10g0291731 Helianthus annuus HOM05D004164 ORTHO05D004891 6.6e-59 231.5 216 54.6
Sc08g0003530 Simmondsia chinensis HOM05D004164 ORTHO05D004891 6.6e-59 231.5 216 55.1
ATR0782G002 Amborella trichopoda HOM05D004164 ORTHO05D004891 8.7e-59 231.1 216 54.6
Ca_16502_v3 Cicer arietinum L. HOM05D004164 ORTHO05D004891 1.5e-58 230.3 219 56.6
TAR381G0722 Trochodendron aralioides HOM05D004164 ORTHO05D004891 1.5e-58 230.3 215 56.3
Lj6g0000010 Lotus japonicus HOM05D004164 ORTHO05D004891 2.5e-58 229.6 224 54.5
Lalb_Chr20g0122971 Lupinus albus HOM05D004164 ORTHO05D004891 2.5e-58 229.6 216 56.5
Zm00001eb033580 Zea mays HOM05D004164 ORTHO05D004891 3.3e-58 229.2 210 57.1
Ah.01g022180 Amaranthus hybridus HOM05D004164 ORTHO05D004891 4.3e-58 228.8 219 53.0
Gohir.A04G114200 Gossypium hirsutum HOM05D004164 ORTHO05D004891 5.6e-58 228.4 217 57.1
Cfa005671 Carpinus fangiana HOM05D004164 ORTHO05D004891 7.3e-58 228.0 216 55.1
CiPaw.05G034200 Carya illinoinensis HOM05D004164 ORTHO05D004891 7.3e-58 228.0 216 53.7
Atru.chr6.1169 Acer truncatum HOM05D004164 ORTHO05D004891 9.6e-58 227.6 216 54.6
ClCG09G015620 Citrullus lanatus HOM05D004164 ORTHO05D004891 9.6e-58 227.6 216 54.2
Potri.017G051800 Populus trichocarpa HOM05D004164 ORTHO05D004891 9.6e-58 227.6 216 56.0
TWI14G1169 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 9.6e-58 227.6 216 56.0
MSTRG.20292 Avicennia marina HOM05D004164 ORTHO05D004891 1.2e-57 227.3 216 55.1
Rhsim11G0139400 Rhododendron simsii HOM05D004164 ORTHO05D004891 1.6e-57 226.9 212 56.1
Hund00072 Selenicereus undatus HOM05D004164 ORTHO05D004891 1.6e-57 226.9 219 54.8
vmacro01837 Vaccinium macrocarpon HOM05D004164 ORTHO05D004891 1.6e-57 226.9 210 55.7
Migut.B00589 Erythranthe guttata HOM05D004164 ORTHO05D004891 3.6e-57 225.7 219 53.0
Os08g0485400 Oryza sativa ssp. japonica HOM05D004164 ORTHO05D004891 3.6e-57 225.7 215 55.8
Psat5g128640 Pisum sativum HOM05D004164 ORTHO05D004891 3.6e-57 225.7 216 55.1
Prupe.8G064000 Prunus persica HOM05D004164 ORTHO05D004891 3.6e-57 225.7 217 54.4
Cpa.g.sc42.29 Carica papaya HOM05D004164 ORTHO05D004891 4.7e-57 225.3 201 59.2
Lsat_1_v5_gn_5_108141 Lactuca sativa HOM05D004164 ORTHO05D004891 4.7e-57 225.3 216 54.2
VMungo0540G2402 Vigna mungo HOM05D004164 ORTHO05D004891 4.7e-57 225.3 219 54.3
ECA234G4615 Erigeron canadensis HOM05D004164 ORTHO05D004891 8.1e-57 224.6 216 54.2
CANSAT11G1236 Cannabis sativa HOM05D004164 ORTHO05D004891 1.1e-56 224.2 217 53.5
QL11p022503 Quercus lobata HOM05D004164 ORTHO05D004891 1.1e-56 224.2 216 53.7
Eucgr.G00847 Eucalyptus grandis HOM05D004164 ORTHO05D004891 1.4e-56 223.8 217 53.9
Medtr3g069190 Medicago truncatula HOM05D004164 ORTHO05D004891 1.8e-56 223.4 216 54.2
RcHm_v2.0_Chr6g0271551 Rosa chinensis HOM05D004164 ORTHO05D004891 1.8e-56 223.4 219 53.4
Ciclev10028812m.g Citrus clementina HOM05D004164 ORTHO05D004891 3.1e-56 222.6 216 53.2
Peaxi162Scf01060g00013 Petunia axillaris HOM05D004164 ORTHO05D004891 3.1e-56 222.6 217 53.5
Sabra17G0043400 Salix brachista HOM05D004164 ORTHO05D004891 3.1e-56 222.6 216 54.2
SabraUnG0002700 Salix brachista HOM05D004164 ORTHO05D004891 3.1e-56 222.6 216 54.2
FAN15G1714 Fragaria x ananassa HOM05D004164 ORTHO05D004891 5.2e-56 221.9 219 52.5
TWI59G0238 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 5.2e-56 221.9 216 53.2
Glyma.08G178100 Glycine max HOM05D004164 ORTHO05D004891 6.9e-56 221.5 216 54.6
PGSC0003DMG400012550 Solanum tuberosum HOM05D004164 ORTHO05D004891 1.2e-55 220.7 217 52.5
GSVIVG01015759001 Vitis vinifera HOM05D004164 ORTHO05D004891 1.2e-55 220.7 216 55.1
AUR62010154 Chenopodium quinoa HOM05D004164 ORTHO05D004891 1.5e-55 220.3 231 51.5
FAN18G3873 Fragaria x ananassa HOM05D004164 ORTHO05D004891 1.5e-55 220.3 219 52.1
Lj5A235T51 Lonicera japonica HOM05D004164 ORTHO05D004891 1.5e-55 220.3 214 53.7
AUR62013150 Chenopodium quinoa HOM05D004164 ORTHO05D004891 3.4e-55 219.2 231 51.5
Cc02_g21290 Coffea canephora HOM05D004164 ORTHO05D004891 3.4e-55 219.2 219 53.0
Dinv24178 Davidia involucrata HOM05D004164 ORTHO05D004891 3.4e-55 219.2 214 52.3
Nitab4.5_0000863g0200 Nicotiana tabacum HOM05D004164 ORTHO05D004891 3.4e-55 219.2 217 52.1
CAN.G523.53 Capsicum annuum HOM05D004164 ORTHO05D004891 4.4e-55 218.8 217 52.1
arahy.Tifrunner.gnm1.ann1.IF3X13 Arachis hypogaea HOM05D004164 ORTHO05D004891 7.6e-55 218.0 213 55.4
Sopen01g047880 Solanum pennellii HOM05D004164 ORTHO05D004891 7.6e-55 218.0 217 51.6
SMO143G0159 Selaginella moellendorffii HOM05D004164 ORTHO05D004891 9.9e-55 217.6 214 51.9
Solyc01g105370.4 Solanum lycopersicum HOM05D004164 ORTHO05D004891 9.9e-55 217.6 217 51.6
Phvul.006G205400 Phaseolus vulgaris HOM05D004164 ORTHO05D004891 8.4e-54 214.5 216 53.2
DCAR_001777 Daucus carota HOM05D004164 ORTHO05D004891 3.2e-53 212.6 216 52.3
RcHm_v2.0_Chr6g0271711 Rosa chinensis HOM05D004164 ORTHO05D004891 4.2e-53 212.2 220 51.8
HPP92_004281 Vanilla planifolia HOM05D004164 ORTHO05D004891 9.3e-53 211.1 217 51.2
AagrBONN_evm.TU.Sc2ySwM_228.2787 Anthoceros agrestis HOM05D004164 ORTHO05D004891 1.6e-52 210.3 209 52.6
Gorai.012G142600 Gossypium raimondii HOM05D004164 ORTHO05D004891 2.1e-52 209.9 217 53.0
Mapoly0043s0005 Marchantia polymorpha HOM05D004164 ORTHO05D004891 2.7e-52 209.5 217 48.8
SalBow5G1609 Salvia bowleyana HOM05D004164 ORTHO05D004891 3.0e-51 206.1 247 47.8
SalBow5G4318 Salvia bowleyana HOM05D004164 ORTHO05D004891 3.9e-51 205.7 247 47.8
Nn2g14913 Nelumbo nucifera HOM05D004164 ORTHO05D004891 7.3e-50 201.4 204 54.9
Gohir.D04G155600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 3.8e-46 189.1 217 49.3
Oeu007975.1 Olea europaea HOM05D004164 ORTHO05D004891 1.1e-45 187.6 287 40.4
EL10Ac9g21504 Beta vulgaris HOM05D004164 ORTHO05D004891 2.7e-44 183.0 219 46.6
MBI02_g02171_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 3.3e-42 176.0 162 53.7
FvH4_5g07040 Fragaria vesca HOM05D004164 ORTHO05D004891 4.3e-42 175.6 165 52.1
Haze_10597 Corylus avellana HOM05D004164 ORTHO05D004891 8.1e-41 171.4 215 45.1
SGA_v2.0_scaffold83G26314 Striga asiatica HOM05D004164 ORTHO05D004891 2.0e-39 166.8 238 41.2
Nitab4.5_0002401g0010 Nicotiana tabacum HOM05D004164 ORTHO05D004891 7.1e-37 158.3 149 53.7
PSO400G0001 Papaver somniferum HOM05D004164 ORTHO05D004891 2.6e-31 139.8 98 68.4
PRCOL_00000119 Prasinoderma coloniale HOM05D004164 ORTHO05D004891 2.9e-22 109.8 223 36.3
PSO541G2216 Papaver somniferum HOM05D004164 ORTHO05D004891 5.0e-22 109.0 83 67.5
FvH4_2g11890 Fragaria vesca HOM05D004164 ORTHO05D004891 8.5e-22 108.2 137 46.0
Prupe.8G063800 Prunus persica HOM05D004164 ORTHO05D004891 1.1e-21 107.8 102 55.9
FAN24G2526 Fragaria x ananassa HOM05D004164 ORTHO05D004891 1.2e-20 104.4 107 49.5
Pp3s30_626 Physcomitrium patens HOM05D004164 ORTHO05D004891 2.1e-20 103.6 248 31.9
Cfa026765 Carpinus fangiana HOM05D004164 ORTHO05D004891 8.2e-17 91.7 235 34.5
Cfa023826 Carpinus fangiana HOM05D004164 ORTHO05D004891 2.0e-15 87.0 197 32.5
PSO646G0001 Papaver somniferum HOM05D004164 ORTHO05D004891 6.5e-14 82.0 64 62.5
TPR.G11284 Trifolium pratense HOM05D004164 ORTHO05D004891 2.1e-12 77.0 65 61.5
Prupe.8G063900 Prunus persica HOM05D004164 ORTHO05D004891 2.7e-12 76.6 65 52.3
Cfa026889 Carpinus fangiana HOM05D004164 ORTHO05D004891 1.0e-11 74.7 243 30.5
COL.COLO4_01173 Corchorus olitorius HOM05D004164 ORTHO05D004891 4.4e-10 69.3 113 41.6
TPR.G9891 Trifolium pratense HOM05D004164 ORTHO05D004891 9.7e-10 68.2 65 58.5
MCO10G397 Micromonas commoda HOM05D004164 ORTHO05D004891 6.3e-09 65.5 198 31.3
MD10G1050600 Malus domestica HOM05D004164 ORTHO05D004891 8.2e-09 65.1 64 40.6
TPR.G19821 Trifolium pratense HOM05D004164 ORTHO05D004891 4.1e-08 62.8 85 47.1
MBI02_g02172_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 3.4e-07 59.7 44 61.4


User provided reference genes

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