Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G5317 Papaver somniferum HOM05D006133 ORTHO05D007855 2.3e-106 389.0 215 100.0
PSO478G1675 Papaver somniferum HOM05D006133 ORTHO05D007855 3.1e-103 378.6 215 97.2
MBI09_g12165_MAGBIO Magnolia biondii HOM05D006133 ORTHO05D007855 4.1e-71 271.9 207 73.9
TAR628G0719 Trochodendron aralioides HOM05D006133 ORTHO05D007855 1.4e-66 256.9 208 70.2
QL05p040164 Quercus lobata HOM05D006133 ORTHO05D007855 7.7e-62 241.1 207 62.3
Sc05g0007700 Simmondsia chinensis HOM05D006133 ORTHO05D007855 7.7e-62 241.1 210 63.8
Manes.16G026900 Manihot esculenta HOM05D006133 ORTHO05D007855 8.6e-61 237.7 207 63.3
AUR62017011 Chenopodium quinoa HOM05D006133 ORTHO05D007855 4.3e-60 235.3 211 63.5
Hund23730 Selenicereus undatus HOM05D006133 ORTHO05D007855 7.3e-60 234.6 210 60.5
Hund23731 Selenicereus undatus HOM05D006133 ORTHO05D007855 7.3e-60 234.6 210 60.5
Thecc.06G188500 Theobroma cacao HOM05D006133 ORTHO05D007855 1.2e-59 233.8 202 63.4
Dinv40551 Davidia involucrata HOM05D006133 ORTHO05D007855 2.8e-59 232.6 208 63.0
ATR0584G083 Amborella trichopoda HOM05D006133 ORTHO05D007855 6.1e-59 231.5 207 62.8
AUR62014816 Chenopodium quinoa HOM05D006133 ORTHO05D007855 6.1e-59 231.5 211 63.0
Cc02_g13300 Coffea canephora HOM05D006133 ORTHO05D007855 6.1e-59 231.5 207 61.4
Atru.chr10.1894 Acer truncatum HOM05D006133 ORTHO05D007855 5.2e-58 228.4 207 60.9
MELO3C002599.2 Cucumis melo HOM05D006133 ORTHO05D007855 8.9e-58 227.6 176 65.9
CSS0047692 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 1.2e-57 227.3 209 63.2
CiPaw.09G059200 Carya illinoinensis HOM05D006133 ORTHO05D007855 1.5e-57 226.9 207 60.9
Haze_06477 Corylus avellana HOM05D006133 ORTHO05D007855 1.5e-57 226.9 208 60.1
COL.COLO4_31481 Corchorus olitorius HOM05D006133 ORTHO05D007855 2.0e-57 226.5 212 59.9
Lj1A1206T67 Lonicera japonica HOM05D006133 ORTHO05D007855 2.6e-57 226.1 210 61.0
ClCG03G006010 Citrullus lanatus HOM05D006133 ORTHO05D007855 7.5e-57 224.6 208 58.2
Hma1.2p1_0785F.1_g217580 Hydrangea macrophylla HOM05D006133 ORTHO05D007855 7.5e-57 224.6 216 59.3
CsaV3_1G012270 Cucumis sativus L. HOM05D006133 ORTHO05D007855 9.8e-57 224.2 207 58.9
ECA234G2723 Erigeron canadensis HOM05D006133 ORTHO05D007855 9.8e-57 224.2 194 61.9
Actinidia05630 Actinidia chinensis HOM05D006133 ORTHO05D007855 1.3e-56 223.8 207 61.4
Migut.M01145 Erythranthe guttata HOM05D006133 ORTHO05D007855 1.3e-56 223.8 197 62.9
Lj4g0021405 Lotus japonicus HOM05D006133 ORTHO05D007855 3.7e-56 222.2 213 61.0
Glyma.13G179800 Glycine max HOM05D006133 ORTHO05D007855 4.9e-56 221.9 212 60.8
Potri.004G042800 Populus trichocarpa HOM05D006133 ORTHO05D007855 1.4e-55 220.3 209 61.2
Cpa.g.sc27.45 Carica papaya HOM05D006133 ORTHO05D007855 1.8e-55 219.9 205 60.0
Gorai.011G027600 Gossypium raimondii HOM05D006133 ORTHO05D007855 1.8e-55 219.9 203 61.1
Cfa000437 Carpinus fangiana HOM05D006133 ORTHO05D007855 3.2e-55 219.2 208 59.1
Medtr4g088855 Medicago truncatula HOM05D006133 ORTHO05D007855 4.1e-55 218.8 202 60.4
Gohir.A10G025600 Gossypium hirsutum HOM05D006133 ORTHO05D007855 1.2e-54 217.2 203 60.1
arahy.Tifrunner.gnm1.ann1.YAJ938 Arachis hypogaea HOM05D006133 ORTHO05D007855 2.0e-54 216.5 222 57.7
Peaxi162Scf00736g00427 Petunia axillaris HOM05D006133 ORTHO05D007855 7.8e-54 214.5 218 57.8
Prupe.4G046300 Prunus persica HOM05D006133 ORTHO05D007855 1.0e-53 214.2 207 58.5
TPR.G12027 Trifolium pratense HOM05D006133 ORTHO05D007855 1.0e-53 214.2 177 65.0
Carub.0004s1546 Capsella rubella HOM05D006133 ORTHO05D007855 1.7e-53 213.4 216 56.9
Nn1g08778 Nelumbo nucifera HOM05D006133 ORTHO05D007855 2.3e-53 213.0 208 59.6
Ca_18541_v3 Cicer arietinum L. HOM05D006133 ORTHO05D007855 3.0e-53 212.6 173 65.9
RcHm_v2.0_Chr5g0008281 Rosa chinensis HOM05D006133 ORTHO05D007855 3.0e-53 212.6 202 59.4
Glyma.07G196100 Glycine max HOM05D006133 ORTHO05D007855 3.9e-53 212.2 212 59.9
Phvul.002G234200 Phaseolus vulgaris HOM05D006133 ORTHO05D007855 5.0e-53 211.8 212 58.5
arahy.Tifrunner.gnm1.ann1.Y5A5WX Arachis hypogaea HOM05D006133 ORTHO05D007855 1.1e-52 210.7 210 58.6
CSS0042278 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 1.1e-52 210.7 214 57.5
Duzib235G0895 Durio zibethinus HOM05D006133 ORTHO05D007855 1.1e-52 210.7 168 66.1
CDE04G1633 Ceratophyllum demersum HOM05D006133 ORTHO05D007855 1.9e-52 209.9 204 60.8
Os03g0837800 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 1.9e-52 209.9 207 56.5
THA.LOC104814218 Tarenaya hassleriana HOM05D006133 ORTHO05D007855 1.9e-52 209.9 206 57.3
BolC4t27810H Brassica oleracea HOM05D006133 ORTHO05D007855 7.3e-52 208.0 214 55.6
Cc01_g03530 Coffea canephora HOM05D006133 ORTHO05D007855 1.2e-51 207.2 166 65.7
FvH4_3g09320 Fragaria vesca HOM05D006133 ORTHO05D007855 1.2e-51 207.2 202 57.9
unitig_22.g6229 Utricularia gibba HOM05D006133 ORTHO05D007855 1.6e-51 206.8 182 62.1
AL4G29540 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 2.1e-51 206.5 213 56.3
BcaC02g07769 Brassica carinata HOM05D006133 ORTHO05D007855 4.7e-51 205.3 214 54.7
Zm00001eb063880 Zea mays HOM05D006133 ORTHO05D007855 6.2e-51 204.9 209 54.1
Ah.09g237330 Amaranthus hybridus HOM05D006133 ORTHO05D007855 1.0e-50 204.1 224 52.2
Oeu057904.1 Olea europaea HOM05D006133 ORTHO05D007855 1.4e-50 203.8 207 56.5
AT2G33793 Arabidopsis thaliana HOM05D006133 ORTHO05D007855 3.1e-50 202.6 213 55.4
VMungo0251G0712 Vigna mungo HOM05D006133 ORTHO05D007855 3.1e-50 202.6 212 56.6
CARHR127900 Cardamine hirsuta HOM05D006133 ORTHO05D007855 8.9e-50 201.1 213 54.0
Thhalv10017234m.g Eutrema salsugineum HOM05D006133 ORTHO05D007855 1.5e-49 200.3 209 56.5
FAN16G1924 Fragaria x ananassa HOM05D006133 ORTHO05D007855 1.5e-49 200.3 202 56.9
Sopen02g023140 Solanum pennellii HOM05D006133 ORTHO05D007855 1.1e-47 194.1 208 55.3
CAN.G1164.26 Capsicum annuum HOM05D006133 ORTHO05D007855 3.2e-47 192.6 208 54.8
TWI38G1277 Tripterygium wilfordii HOM05D006133 ORTHO05D007855 7.0e-47 191.4 208 55.8
HanXRQChr16g0517711 Helianthus annuus HOM05D006133 ORTHO05D007855 9.2e-47 191.0 188 57.4
Lsat_1_v5_gn_4_52940 Lactuca sativa HOM05D006133 ORTHO05D007855 2.7e-46 189.5 188 56.4
Nitab4.5_0003432g0010 Nicotiana tabacum HOM05D006133 ORTHO05D007855 3.5e-46 189.1 208 55.3
PGSC0003DMG400029689 Solanum tuberosum HOM05D006133 ORTHO05D007855 4.6e-46 188.7 208 54.3
SMO353G0258 Selaginella moellendorffii HOM05D006133 ORTHO05D007855 1.1e-44 184.1 174 56.9
Nitab4.5_0007940g0050 Nicotiana tabacum HOM05D006133 ORTHO05D007855 1.9e-44 183.3 208 54.3
Rhsim13G0177600 Rhododendron simsii HOM05D006133 ORTHO05D007855 7.3e-44 181.4 252 49.2
BraA04t18104Z Brassica rapa HOM05D006133 ORTHO05D007855 1.6e-43 180.3 174 58.6
Solyc02g078280.3 Solanum lycopersicum HOM05D006133 ORTHO05D007855 2.1e-43 179.9 171 59.6
Psat7g113640 Pisum sativum HOM05D006133 ORTHO05D007855 8.1e-43 177.9 217 51.6
AagrBONN_evm.TU.Sc2ySwM_228.202 Anthoceros agrestis HOM05D006133 ORTHO05D007855 1.1e-42 177.6 186 51.6
C04p63360 Brassica napus HOM05D006133 ORTHO05D007855 4.0e-42 175.6 201 51.7
Sp4g16180 Schrenkiella parvula HOM05D006133 ORTHO05D007855 4.0e-42 175.6 209 52.2
Potri.011G051900 Populus trichocarpa HOM05D006133 ORTHO05D007855 5.2e-42 175.3 209 53.6
EL10Ac8g20377 Beta vulgaris HOM05D006133 ORTHO05D007855 6.8e-42 174.9 153 61.4
A04p26010 Brassica napus HOM05D006133 ORTHO05D007855 1.5e-41 173.7 183 54.6
Ciclev10017918m.g Citrus clementina HOM05D006133 ORTHO05D007855 8.3e-40 167.9 144 62.5
Dinv07556 Davidia involucrata HOM05D006133 ORTHO05D007855 3.5e-38 162.5 152 60.5
FAN11G1298 Fragaria x ananassa HOM05D006133 ORTHO05D007855 2.3e-37 159.8 145 58.6
C04p15330 Brassica napus HOM05D006133 ORTHO05D007855 8.6e-37 157.9 151 58.3
FAN25G2154 Fragaria x ananassa HOM05D006133 ORTHO05D007855 1.1e-36 157.5 140 59.3
BolC4t23106H Brassica oleracea HOM05D006133 ORTHO05D007855 2.5e-36 156.4 215 47.0
FAN21G1061 Fragaria x ananassa HOM05D006133 ORTHO05D007855 4.3e-36 155.6 138 59.4
BcaC02g11457 Brassica carinata HOM05D006133 ORTHO05D007855 3.6e-35 152.5 151 57.0
Sed0025328 Sechium edule HOM05D006133 ORTHO05D007855 2.3e-34 149.8 161 52.2
DCAR_028075 Daucus carota HOM05D006133 ORTHO05D007855 3.1e-34 149.4 210 48.1
Gohir.D10G026300 Gossypium hirsutum HOM05D006133 ORTHO05D007855 1.5e-33 147.1 148 56.8
Solyc02g078290.4 Solanum lycopersicum HOM05D006133 ORTHO05D007855 2.0e-33 146.7 164 53.7
MD05G1313300 Malus domestica HOM05D006133 ORTHO05D007855 4.4e-33 145.6 152 55.9
Cc01_g03500 Coffea canephora HOM05D006133 ORTHO05D007855 1.4e-31 140.6 217 44.2
CANSAT35G1333 Cannabis sativa HOM05D006133 ORTHO05D007855 1.9e-31 140.2 174 49.4
SGA_v2.0_scaffold22G09717 Striga asiatica HOM05D006133 ORTHO05D007855 2.1e-30 136.7 201 47.3
Mapoly0103s0052 Marchantia polymorpha HOM05D006133 ORTHO05D007855 3.9e-29 132.5 219 37.9
Sabra11G0035700 Salix brachista HOM05D006133 ORTHO05D007855 3.6e-27 125.9 209 43.5
PGR004G1018 Punica granatum HOM05D006133 ORTHO05D007855 1.4e-26 124.0 209 44.0
Zm00001eb304600 Zea mays HOM05D006133 ORTHO05D007855 6.9e-26 121.7 141 47.5
Os07g0256300 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 3.8e-24 115.9 184 42.9
GSVIVG01033625001 Vitis vinifera HOM05D006133 ORTHO05D007855 1.9e-23 113.6 168 45.2
Lalb_Chr05g0218461 Lupinus albus HOM05D006133 ORTHO05D007855 4.2e-23 112.5 208 38.9
AL4G11580 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 7.1e-23 111.7 205 41.0
Cpa.g.sc39.10 Carica papaya HOM05D006133 ORTHO05D007855 3.3e-20 102.8 123 51.2
BcaB02g10593 Brassica carinata HOM05D006133 ORTHO05D007855 5.6e-20 102.1 101 57.4
HPP92_006840 Vanilla planifolia HOM05D006133 ORTHO05D007855 2.4e-18 96.7 96 60.4
SGA_v2.0_scaffold499G52489 Striga asiatica HOM05D006133 ORTHO05D007855 1.0e-13 81.3 198 36.9
Eucgr.B00901 Eucalyptus grandis HOM05D006133 ORTHO05D007855 6.7e-13 78.6 108 45.4
Os07g0208801 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 1.9e-12 77.0 69 55.1
Eucgr.B00955 Eucalyptus grandis HOM05D006133 ORTHO05D007855 5.6e-12 75.5 108 44.4
A05p11770 Brassica napus HOM05D006133 ORTHO05D007855 2.1e-11 73.6 95 46.3
Prupe.4G042300 Prunus persica HOM05D006133 ORTHO05D007855 2.0e-09 67.0 70 55.7
HPP92_006839 Vanilla planifolia HOM05D006133 ORTHO05D007855 4.5e-09 65.9 54 66.7
Eucgr.B00904 Eucalyptus grandis HOM05D006133 ORTHO05D007855 1.7e-08 63.9 144 35.4
Gohir.A01G166500 Gossypium hirsutum HOM05D006133 ORTHO05D007855 2.2e-08 63.5 84 45.2
BraA05t20121Z Brassica rapa HOM05D006133 ORTHO05D007855 2.4e-07 60.1 79 46.8
Zm00001eb131680 Zea mays HOM05D006133 ORTHO05D446205 3.2e-07 59.7 65 47.7
Zm00001eb225310 Zea mays HOM05D000901 ORTHO05D005921 3.2e-07 59.7 65 47.7
TAR636G0634 Trochodendron aralioides HOM05D006133 ORTHO05D007855 7.1e-07 58.5 140 34.3
Eucgr.B00952 Eucalyptus grandis HOM05D006133 ORTHO05D007855 2.7e-06 56.6 92 40.2


User provided reference genes

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