Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G5282 Papaver somniferum HOM05D003274 ORTHO05D003714 1.8e-33 146.0 114 100.0
PSO063G0736 Papaver somniferum HOM05D003274 ORTHO05D003714 1.6e-26 122.9 106 94.3
Nn2g13817 Nelumbo nucifera HOM05D003274 ORTHO05D003714 4.7e-26 121.3 117 86.3
Phvul.011G085100 Phaseolus vulgaris HOM05D003274 ORTHO05D003714 8.1e-26 120.6 117 82.9
PSO017G5390 Papaver somniferum HOM05D003274 ORTHO05D003714 1.8e-25 119.4 101 95.0
PSO339G3703 Papaver somniferum HOM05D003274 ORTHO05D003714 3.1e-25 118.6 105 93.3
Phvul.011G075201 Phaseolus vulgaris HOM05D003274 ORTHO05D003714 5.2e-25 117.9 117 82.9
Sed0002530 Sechium edule HOM05D003274 ORTHO05D003714 5.2e-25 117.9 118 81.4
VMungo1127G1114 Vigna mungo HOM05D003274 ORTHO05D003714 5.2e-25 117.9 117 82.1
Glyma.12G080000 Glycine max HOM05D003274 ORTHO05D003714 6.9e-25 117.5 117 82.1
Thecc.09G349700 Theobroma cacao HOM05D003274 ORTHO05D003714 6.9e-25 117.5 116 81.0
MBI18_g42726_MAGBIO Magnolia biondii HOM05D003274 ORTHO05D003714 2.0e-24 115.9 118 86.4
Phvul.L001682 Phaseolus vulgaris HOM05D003274 ORTHO05D003714 2.0e-24 115.9 117 81.2
Aqoxy2G01722 Aquilegia oxysepala HOM05D003274 ORTHO05D003714 3.4e-24 115.2 118 83.9
ClCG03G002800 Citrullus lanatus HOM05D003274 ORTHO05D003714 3.4e-24 115.2 118 77.1
Dinv34732 Davidia involucrata HOM05D003274 ORTHO05D003714 3.4e-24 115.2 114 81.6
Glyma.06G211400 Glycine max HOM05D003274 ORTHO05D003714 3.4e-24 115.2 116 81.0
Lalb_Chr03g0027661 Lupinus albus HOM05D003274 ORTHO05D003714 5.8e-24 114.4 118 84.7
Psat7g149280 Pisum sativum HOM05D003274 ORTHO05D003714 7.6e-24 114.0 115 80.9
Glyma.04G151500 Glycine max HOM05D003274 ORTHO05D003714 9.9e-24 113.6 116 80.2
Lj3g0011566 Lotus japonicus HOM05D003274 ORTHO05D003714 1.7e-23 112.8 118 77.1
Lalb_Chr01g0004551 Lupinus albus HOM05D003274 ORTHO05D003714 1.7e-23 112.8 118 78.0
arahy.Tifrunner.gnm1.ann1.A7H879 Arachis hypogaea HOM05D003274 ORTHO05D003714 2.2e-23 112.5 118 79.7
arahy.Tifrunner.gnm1.ann1.RYV3A9 Arachis hypogaea HOM05D003274 ORTHO05D003714 2.2e-23 112.5 118 79.7
Haze_16745 Corylus avellana HOM05D003274 ORTHO05D003714 3.8e-23 111.7 118 68.6
BcaC04g19614 Brassica carinata HOM05D003274 ORTHO05D003714 4.9e-23 111.3 118 78.0
Ca_19311_v3 Cicer arietinum L. HOM05D003274 ORTHO05D003714 4.9e-23 111.3 118 78.0
BcaB08g36387 Brassica carinata HOM05D003274 ORTHO05D003714 6.4e-23 110.9 118 78.0
HanXRQChr04g0103601 Helianthus annuus HOM05D003274 ORTHO05D003714 8.4e-23 110.5 115 81.7
TAR636G2234 Trochodendron aralioides HOM05D003274 ORTHO05D003714 1.1e-22 110.2 118 82.2
Medtr4g057565 Medicago truncatula HOM05D003274 ORTHO05D003714 1.9e-22 109.4 116 83.6
Gohir.D04G005200 Gossypium hirsutum HOM05D003274 ORTHO05D003714 2.4e-22 109.0 118 71.2
ATR0723G021 Amborella trichopoda HOM05D003274 ORTHO05D003714 3.2e-22 108.6 118 77.1
CSS0017437 Camellia sinensis var. sinensis HOM05D003274 ORTHO05D003714 3.2e-22 108.6 115 74.8
CSS0044730 Camellia sinensis var. sinensis HOM05D003274 ORTHO05D003714 3.2e-22 108.6 115 74.8
DCAR_018775 Daucus carota HOM05D003274 ORTHO05D003714 7.1e-22 107.5 114 76.3
Ah.08g216240 Amaranthus hybridus HOM05D003274 ORTHO05D003714 2.7e-21 105.5 117 78.6
Gohir.A10G202200 Gossypium hirsutum HOM05D003274 ORTHO05D003714 2.7e-21 105.5 118 78.0
Peaxi162Scf00892g00008 Petunia axillaris HOM05D003274 ORTHO05D003714 7.8e-21 104.0 114 76.3
Gorai.012G006500 Gossypium raimondii HOM05D003274 ORTHO05D003714 1.0e-20 103.6 118 80.5
SalBow4G3301 Salvia bowleyana HOM05D003274 ORTHO05D003714 1.0e-20 103.6 114 80.7
COL.COLO4_36536 Corchorus olitorius HOM05D003274 ORTHO05D003714 1.3e-20 103.2 118 80.5
SGA_v2.0_scaffold277G46690 Striga asiatica HOM05D003274 ORTHO05D003714 2.3e-20 102.4 114 75.4
Actinidia24139 Actinidia chinensis HOM05D003274 ORTHO05D003714 3.0e-20 102.1 108 75.9
Gorai.011G235800 Gossypium raimondii HOM05D003274 ORTHO05D003714 3.0e-20 102.1 118 76.3
TWI79G0911 Tripterygium wilfordii HOM05D003274 ORTHO05D003714 3.9e-20 101.7 120 62.5
MD00G1032300 Malus domestica HOM05D003274 ORTHO05D003714 5.1e-20 101.3 107 77.6
Gohir.D10G210400 Gossypium hirsutum HOM05D003274 ORTHO05D003714 6.6e-20 100.9 118 77.1
TWI63G1596 Tripterygium wilfordii HOM05D003274 ORTHO05D003714 6.6e-20 100.9 118 69.5
Atru.chr3.3534 Acer truncatum HOM05D003274 ORTHO05D003714 8.7e-20 100.5 106 80.2
Lsat_1_v5_gn_1_62640 Lactuca sativa HOM05D003274 ORTHO05D003714 8.7e-20 100.5 114 74.6
Prupe.6G109700 Prunus persica HOM05D003274 ORTHO05D003714 1.1e-19 100.1 105 77.1
Zm00001eb321340 Zea mays HOM05D003274 ORTHO05D003714 1.1e-19 100.1 118 73.7
HPP92_008502 Vanilla planifolia HOM05D003274 ORTHO05D003714 1.9e-19 99.4 118 70.3
MD11G1146600 Malus domestica HOM05D003274 ORTHO05D003714 3.3e-19 98.6 108 77.8
SEGI_32844 Sequoiadendron giganteum HOM05D003274 ORTHO05D003714 3.3e-19 98.6 118 76.3
TWI31G0037 Tripterygium wilfordii HOM05D003274 ORTHO05D003714 3.3e-19 98.6 108 75.0
GSVIVG01031487001 Vitis vinifera HOM05D003274 ORTHO05D003714 4.3e-19 98.2 105 81.0
QL01p015396 Quercus lobata HOM05D003274 ORTHO05D003714 5.6e-19 97.8 117 72.6
Gohir.A03G029800 Gossypium hirsutum HOM05D003274 ORTHO05D003714 7.3e-19 97.4 103 77.7
Potri.008G034700 Populus trichocarpa HOM05D003274 ORTHO05D003714 7.3e-19 97.4 109 79.8
Sabra08G0023100 Salix brachista HOM05D003274 ORTHO05D003714 7.3e-19 97.4 108 80.6
TAR623G0611 Trochodendron aralioides HOM05D003274 ORTHO05D003714 7.3e-19 97.4 105 80.0
DCAR_015514 Daucus carota HOM05D003274 ORTHO05D003714 9.6e-19 97.1 103 77.7
Gorai.003G145500 Gossypium raimondii HOM05D003274 ORTHO05D003714 9.6e-19 97.1 103 77.7
arahy.Tifrunner.gnm1.ann1.R6Y7HN Arachis hypogaea HOM05D003274 ORTHO05D003714 1.3e-18 96.7 118 78.0
Solyc06g074840.3 Solanum lycopersicum HOM05D003274 ORTHO05D003714 1.3e-18 96.7 114 73.7
A03p10970 Brassica napus HOM05D003274 ORTHO05D003714 1.6e-18 96.3 108 73.1
BraA03t10407Z Brassica rapa HOM05D003274 ORTHO05D003714 1.6e-18 96.3 108 73.1
Duzib106G1403 Durio zibethinus HOM05D003274 ORTHO05D003714 1.6e-18 96.3 118 76.3
PGR102G1455 Punica granatum HOM05D003274 ORTHO05D003714 1.6e-18 96.3 103 73.8
RcHm_v2.0_Chr5g0057111 Rosa chinensis HOM05D003274 ORTHO05D003714 1.6e-18 96.3 104 76.0
Duzib150G1519 Durio zibethinus HOM05D003274 ORTHO05D003714 2.8e-18 95.5 103 77.7
ECA233G5403 Erigeron canadensis HOM05D003274 ORTHO05D003714 2.8e-18 95.5 106 77.4
FvH4_3g30890 Fragaria vesca HOM05D003274 ORTHO05D003714 2.8e-18 95.5 105 75.2
FAN21G3294 Fragaria x ananassa HOM05D003274 ORTHO05D003714 2.8e-18 95.5 105 75.2
Gohir.D03G138700 Gossypium hirsutum HOM05D003274 ORTHO05D003714 2.8e-18 95.5 103 76.7
FAN25G1779 Fragaria x ananassa HOM05D003274 ORTHO05D003714 3.6e-18 95.1 105 76.2
Os03g0108400 Oryza sativa ssp. japonica HOM05D003274 ORTHO05D003714 3.6e-18 95.1 120 74.2
CSS0018307 Camellia sinensis var. sinensis HOM05D003274 ORTHO05D003714 4.8e-18 94.7 110 75.5
MD01G1102500 Malus domestica HOM05D003274 ORTHO05D003714 4.8e-18 94.7 118 74.6
COL.COLO4_11113 Corchorus olitorius HOM05D003274 ORTHO05D003714 6.2e-18 94.4 103 78.6
FvH4_7g18680 Fragaria vesca HOM05D003274 ORTHO05D003714 6.2e-18 94.4 118 64.4
FAN16G0507 Fragaria x ananassa HOM05D003274 ORTHO05D003714 6.2e-18 94.4 104 75.0
Sp6g22440 Schrenkiella parvula HOM05D003274 ORTHO05D003714 6.2e-18 94.4 106 74.5
A10p18080 Brassica napus HOM05D003274 ORTHO05D003714 8.1e-18 94.0 106 74.5
BraA10t43883Z Brassica rapa HOM05D003274 ORTHO05D003714 8.1e-18 94.0 106 74.5
AUR62038139 Chenopodium quinoa HOM05D003274 ORTHO05D003714 8.1e-18 94.0 106 76.4
Thhalv10014580m.g Eutrema salsugineum HOM05D003274 ORTHO05D003714 8.1e-18 94.0 105 74.3
FAN06G1450 Fragaria x ananassa HOM05D003274 ORTHO05D003714 8.1e-18 94.0 118 64.4
FAN06G4988 Fragaria x ananassa HOM05D003274 ORTHO05D003714 1.1e-17 93.6 118 69.5
Mapoly0195s0002 Marchantia polymorpha HOM05D003274 ORTHO05D003714 1.1e-17 93.6 117 69.2
Nitab4.5_0001163g0120 Nicotiana tabacum HOM05D003274 ORTHO05D003714 1.1e-17 93.6 110 76.4
CSS0030722 Camellia sinensis var. sinensis HOM05D003274 ORTHO05D003714 1.4e-17 93.2 108 75.9
THA.LOC104799520 Tarenaya hassleriana HOM05D003274 ORTHO05D003714 1.4e-17 93.2 106 67.9
arahy.Tifrunner.gnm1.ann1.2XGG6Y Arachis hypogaea HOM05D003274 ORTHO05D003714 1.8e-17 92.8 118 72.9
Manes.04G014101 Manihot esculenta HOM05D003274 ORTHO05D003714 1.8e-17 92.8 106 76.4
Manes.11G151400 Manihot esculenta HOM05D003274 ORTHO05D003714 1.8e-17 92.8 106 76.4
AT3G45000 Arabidopsis thaliana HOM05D003274 ORTHO05D003714 2.4e-17 92.4 118 68.6
Nn6g35260 Nelumbo nucifera HOM05D003274 ORTHO05D003714 2.4e-17 92.4 105 78.1
BraA02t05701Z Brassica rapa HOM05D003274 ORTHO05D003714 3.1e-17 92.0 109 69.7
Sopen06g031270 Solanum pennellii HOM05D003274 ORTHO05D003714 3.1e-17 92.0 114 71.9
PGSC0003DMG400007136 Solanum tuberosum HOM05D003274 ORTHO05D003714 3.1e-17 92.0 114 71.9
AT5G22950 Arabidopsis thaliana HOM05D003274 ORTHO05D003714 4.0e-17 91.7 105 73.3
MSTRG.18696 Avicennia marina HOM05D003274 ORTHO05D003714 4.0e-17 91.7 104 78.8
C09p53640 Brassica napus HOM05D003274 ORTHO05D003714 4.0e-17 91.7 118 70.3
BolC9t58239H Brassica oleracea HOM05D003274 ORTHO05D003714 4.0e-17 91.7 118 70.3
Cpa.g.sc1.15 Carica papaya HOM05D003274 ORTHO05D003714 4.0e-17 91.7 105 69.5
Rhsim13G0099900 Rhododendron simsii HOM05D003274 ORTHO05D003714 4.0e-17 91.7 107 76.6
vmacro03261 Vaccinium macrocarpon HOM05D003274 ORTHO05D003714 6.9e-17 90.9 107 76.6
Thecc.10G085700 Theobroma cacao HOM05D003274 ORTHO05D003714 9.0e-17 90.5 109 77.1
Actinidia32108 Actinidia chinensis HOM05D003274 ORTHO05D003714 1.2e-16 90.1 105 76.2
AUR62009827 Chenopodium quinoa HOM05D003274 ORTHO05D003714 1.2e-16 90.1 105 74.3
TPR.G25654 Trifolium pratense HOM05D003274 ORTHO05D003714 1.5e-16 89.7 105 74.3
EL10Ac7g16339 Beta vulgaris HOM05D003274 ORTHO05D003714 2.0e-16 89.4 108 68.5
AL5G23460 Arabidopsis lyrata HOM05D003274 ORTHO05D003714 2.6e-16 89.0 116 67.2
CiPaw.02G171700 Carya illinoinensis HOM05D003274 ORTHO05D003714 2.6e-16 89.0 105 57.1
Ciclev10032656m.g Citrus clementina HOM05D003274 ORTHO05D003714 3.4e-16 88.6 106 58.5
Lj4g0007028 Lotus japonicus HOM05D003274 ORTHO05D003714 3.4e-16 88.6 116 68.1
Peaxi162Scf00114g00811 Petunia axillaris HOM05D003274 ORTHO05D003714 3.4e-16 88.6 102 78.4
CANSAT56G3857 Cannabis sativa HOM05D003274 ORTHO05D003714 4.5e-16 88.2 106 74.5
Atru.chr12.859 Acer truncatum HOM05D003274 ORTHO05D003714 7.6e-16 87.4 106 62.3
Aa31LG4G14140 Aethionema arabicum HOM05D003274 ORTHO05D003714 7.6e-16 87.4 105 72.4
THA.LOC104810876 Tarenaya hassleriana HOM05D003274 ORTHO05D003714 7.6e-16 87.4 106 73.6
Hund20851 Selenicereus undatus HOM05D003274 ORTHO05D003714 1.3e-15 86.7 102 71.6
Eucgr.B03938 Eucalyptus grandis HOM05D003274 ORTHO05D003714 1.7e-15 86.3 102 73.5
Carub.0006s2073 Capsella rubella HOM05D003274 ORTHO05D003714 2.2e-15 85.9 104 72.1
CAN.G1432.14 Capsicum annuum HOM05D003274 ORTHO05D003714 2.2e-15 85.9 102 76.5
Pp3c15_15320 Physcomitrium patens HOM05D003274 ORTHO05D003714 2.2e-15 85.9 112 50.0
Potri.004G215500 Populus trichocarpa HOM05D003274 ORTHO05D003714 2.2e-15 85.9 102 75.5
Migut.N02565 Erythranthe guttata HOM05D003274 ORTHO05D003714 4.9e-15 84.7 105 70.5
Carub.0005s1078 Capsella rubella HOM05D003274 ORTHO05D003714 6.4e-15 84.3 118 63.6
Nitab4.5_0002001g0020 Nicotiana tabacum HOM05D003274 ORTHO05D003714 6.4e-15 84.3 110 72.7
CARHR190580 Cardamine hirsuta HOM05D003274 ORTHO05D003714 8.4e-15 84.0 105 70.5
CiPaw.01G268000 Carya illinoinensis HOM05D003274 ORTHO05D003714 8.4e-15 84.0 101 64.4
Migut.D02268 Erythranthe guttata HOM05D003274 ORTHO05D003714 8.4e-15 84.0 104 69.2
TPR.G21105 Trifolium pratense HOM05D003274 ORTHO05D003714 1.9e-14 82.8 109 69.7
Nitab4.5_0000329g0200 Nicotiana tabacum HOM05D003274 ORTHO05D003714 2.4e-14 82.4 99 69.7
HanXRQChr01g0019541 Helianthus annuus HOM05D003274 ORTHO05D003714 3.2e-14 82.0 104 72.1
Aqoxy1G01133 Aquilegia oxysepala HOM05D003274 ORTHO05D003714 9.3e-14 80.5 92 75.0
PGR142G0129 Punica granatum HOM05D003274 ORTHO05D003714 9.3e-14 80.5 105 61.0
Ciclev10029212m.g Citrus clementina HOM05D003274 ORTHO05D003714 1.2e-13 80.1 99 64.6
MELO3C004945.2 Cucumis melo HOM05D003274 ORTHO05D003714 1.6e-13 79.7 95 74.7
CsaV3_1G013580 Cucumis sativus L. HOM05D003274 ORTHO05D003714 1.6e-13 79.7 95 74.7
BcaB01g04684 Brassica carinata HOM05D003274 ORTHO05D003714 2.1e-13 79.3 104 69.2
BcaC01g06560 Brassica carinata HOM05D003274 ORTHO05D003714 2.1e-13 79.3 104 69.2
C03p12630 Brassica napus HOM05D003274 ORTHO05D003714 2.1e-13 79.3 104 69.2
BolC3t13731H Brassica oleracea HOM05D003274 ORTHO05D003714 2.1e-13 79.3 104 69.2
CDE06G0550 Ceratophyllum demersum HOM05D003274 ORTHO05D003714 3.5e-13 78.6 106 76.4
BcaB05g22673 Brassica carinata HOM05D003274 ORTHO05D003714 1.3e-12 76.6 115 63.5
Prupe.2G208100 Prunus persica HOM05D003274 ORTHO05D003714 3.9e-12 75.1 106 71.7
QL08p054176 Quercus lobata HOM05D003274 ORTHO05D003714 3.9e-12 75.1 94 63.8
Ah.15g094140 Amaranthus hybridus HOM05D004498 ORTHO05D005300 5.1e-12 74.7 100 64.0
AagrBONN_evm.TU.Sc2ySwM_368.224 Anthoceros agrestis HOM05D003274 ORTHO05D003714 5.1e-12 74.7 117 60.7
FAN10G0869 Fragaria x ananassa HOM05D003274 ORTHO05D003714 5.1e-12 74.7 105 61.9
Rhsim01G0211400 Rhododendron simsii HOM05D003274 ORTHO05D003714 1.1e-11 73.6 101 49.5
Glyma.11G193700 Glycine max HOM05D003274 ORTHO05D003714 1.9e-11 72.8 94 56.4
vmacro14399 Vaccinium macrocarpon HOM05D003274 ORTHO05D003714 1.9e-11 72.8 100 49.0
Cc01_g10420 Coffea canephora HOM05D003274 ORTHO05D003714 7.4e-11 70.9 103 71.8
RcHm_v2.0_Chr5g0057131 Rosa chinensis HOM05D003274 ORTHO05D003714 1.3e-10 70.1 93 67.7
RcHm_v2.0_Chr1g0362411 Rosa chinensis HOM05D003274 ORTHO05D003714 1.6e-10 69.7 96 65.6
SMO367G0787 Selaginella moellendorffii HOM05D003274 ORTHO05D003714 2.1e-10 69.3 103 69.9
CAN.G546.24 Capsicum annuum HOM05D003274 ORTHO05D003714 1.1e-09 67.0 102 64.7
Actinidia07179 Actinidia chinensis HOM05D003274 ORTHO05D003714 1.8e-09 66.2 76 73.7
AL6G34090 Arabidopsis lyrata HOM05D003274 ORTHO05D003714 1.8e-09 66.2 56 75.0
Solyc11g066260.2 Solanum lycopersicum HOM05D003274 ORTHO05D003714 3.1e-09 65.5 101 63.4
Sopen11g026000 Solanum pennellii HOM05D003274 ORTHO05D003714 3.1e-09 65.5 101 63.4
PGSC0003DMG400000449 Solanum tuberosum HOM05D003274 ORTHO05D003714 3.1e-09 65.5 101 63.4
FAN01G1914 Fragaria x ananassa HOM05D003274 ORTHO05D003714 4.0e-09 65.1 96 64.6
FAN03G0690 Fragaria x ananassa HOM05D003274 ORTHO05D003714 9.0e-09 63.9 96 63.5
Lsat_1_v5_gn_6_44161 Lactuca sativa HOM05D003274 ORTHO05D003714 1.2e-08 63.5 35 88.6
A10p18050 Brassica napus HOM05D003274 ORTHO05D003714 1.5e-08 63.2 94 69.1
BraA10t43879Z Brassica rapa HOM05D003274 ORTHO05D003714 1.5e-08 63.2 94 69.1
SGA_v2.0_scaffold436G51602 Striga asiatica HOM05D003274 ORTHO05D003714 3.8e-07 58.5 69 78.3
SalBow3G2793 Salvia bowleyana HOM05D003274 ORTHO05D003714 4.9e-07 58.2 88 62.5
Duzib170G0235 Durio zibethinus HOM05D003274 ORTHO05D003714 8.4e-07 57.4 53 66.0


User provided reference genes

Program Settings