Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G5042 Papaver somniferum HOM05D005523 ORTHO05D007089 0.0e+00 1272.3 635 100.0
PSO017G3752 Papaver somniferum HOM05D005523 ORTHO05D007089 0.0e+00 1251.9 635 98.3
Aqoxy3G00520 Aquilegia oxysepala HOM05D005523 ORTHO05D007089 8.3e-237 823.9 701 62.1
QL03p074443 Quercus lobata HOM05D005523 ORTHO05D007089 1.1e-228 797.0 691 61.1
QL03p074024 Quercus lobata HOM05D005523 ORTHO05D007089 1.6e-227 793.1 691 60.8
GSVIVG01012228001 Vitis vinifera HOM05D005523 ORTHO05D007089 5.9e-227 791.2 666 61.6
Nn4g23450 Nelumbo nucifera HOM05D005523 ORTHO05D007089 1.3e-226 790.0 715 60.3
CANSAT64G1787 Cannabis sativa HOM05D005523 ORTHO05D007089 1.9e-225 786.2 670 61.8
Ciclev10033727m.g Citrus clementina HOM05D005523 ORTHO05D007089 2.8e-224 782.3 675 60.9
Thecc.02G329500 Theobroma cacao HOM05D005523 ORTHO05D007089 9.8e-222 773.9 655 61.8
COL.COLO4_27873 Corchorus olitorius HOM05D005523 ORTHO05D007089 2.2e-221 772.7 655 62.0
Glyma.20G025400 Glycine max HOM05D005523 ORTHO05D007089 2.2e-221 772.7 673 59.6
TWI79G0260 Tripterygium wilfordii HOM05D005523 ORTHO05D007089 4.9e-221 771.5 668 58.1
Cc11_g11910 Coffea canephora HOM05D005523 ORTHO05D007089 1.1e-220 770.4 653 61.3
Potri.010G157700 Populus trichocarpa HOM05D005523 ORTHO05D007089 4.3e-217 758.4 674 59.5
CiPaw.05G124500 Carya illinoinensis HOM05D005523 ORTHO05D007089 9.5e-217 757.3 685 58.8
Gorai.008G176600 Gossypium raimondii HOM05D005523 ORTHO05D007089 2.1e-216 756.1 650 60.8
Rhsim02G0238300 Rhododendron simsii HOM05D005523 ORTHO05D007089 2.1e-216 756.1 724 56.4
Gohir.D12G164000 Gossypium hirsutum HOM05D005523 ORTHO05D007089 2.8e-216 755.7 650 60.6
MD16G1060200 Malus domestica HOM05D005523 ORTHO05D007089 1.4e-215 753.4 676 60.5
Lj4g0005251 Lotus japonicus HOM05D005523 ORTHO05D007089 1.8e-215 753.1 663 60.5
Sed0024899 Sechium edule HOM05D005523 ORTHO05D007089 1.8e-215 753.1 665 60.2
Migut.L01183 Erythranthe guttata HOM05D005523 ORTHO05D007089 1.5e-214 750.0 650 60.6
CsaV3_5G033360 Cucumis sativus L. HOM05D005523 ORTHO05D007089 7.5e-214 747.7 679 57.6
MD13G1061700 Malus domestica HOM05D005523 ORTHO05D007089 7.5e-214 747.7 683 59.7
EL10Ac6g15006 Beta vulgaris HOM05D005523 ORTHO05D007089 2.2e-213 746.1 668 57.2
Lalb_Chr05g0219911 Lupinus albus HOM05D005523 ORTHO05D007089 2.9e-213 745.7 673 58.5
SalBow2G2481 Salvia bowleyana HOM05D005523 ORTHO05D007089 6.4e-213 744.6 685 57.7
Psat7g133840 Pisum sativum HOM05D005523 ORTHO05D007089 1.1e-212 743.8 666 58.9
Atru.chr11.1618 Acer truncatum HOM05D005523 ORTHO05D007089 1.4e-212 743.4 667 60.1
Medtr4g083180 Medicago truncatula HOM05D005523 ORTHO05D007089 2.4e-212 742.7 665 59.2
HanXRQChr17g0552771 Helianthus annuus HOM05D005523 ORTHO05D007089 3.2e-212 742.3 653 60.3
arahy.Tifrunner.gnm1.ann1.1A68HA Arachis hypogaea HOM05D005523 ORTHO05D007089 1.6e-211 740.0 648 60.3
MELO3C012156.2 Cucumis melo HOM05D005523 ORTHO05D007089 4.6e-211 738.4 691 56.9
PGSC0003DMG400028314 Solanum tuberosum HOM05D005523 ORTHO05D007089 7.8e-211 737.6 665 59.1
Lsat_1_v5_gn_4_11761 Lactuca sativa HOM05D005523 ORTHO05D007089 1.3e-210 736.9 644 61.0
Peaxi162Scf00175g00035 Petunia axillaris HOM05D005523 ORTHO05D007089 2.3e-210 736.1 657 60.4
Phvul.002G101900 Phaseolus vulgaris HOM05D005523 ORTHO05D007089 2.3e-210 736.1 669 58.7
Duzib251G0966 Durio zibethinus HOM05D005523 ORTHO05D007089 3.0e-210 735.7 661 59.0
TPR.G34024 Trifolium pratense HOM05D005523 ORTHO05D007089 6.6e-210 734.6 663 59.3
arahy.Tifrunner.gnm1.ann1.5T11RT Arachis hypogaea HOM05D005523 ORTHO05D007089 8.6e-210 734.2 674 57.7
CAN.G707.6 Capsicum annuum HOM05D005523 ORTHO05D007089 2.5e-209 732.6 665 58.5
ECA234G2689 Erigeron canadensis HOM05D005523 ORTHO05D007089 4.3e-209 731.9 650 60.0
Solyc05g012200.3 Solanum lycopersicum HOM05D005523 ORTHO05D007089 8.1e-208 727.6 665 58.0
RcHm_v2.0_Chr4g0438141 Rosa chinensis HOM05D005523 ORTHO05D007089 8.9e-207 724.2 669 58.3
AUR62003091 Chenopodium quinoa HOM05D005523 ORTHO05D007089 2.6e-206 722.6 633 58.6
Haze_11899 Corylus avellana HOM05D005523 ORTHO05D007089 1.7e-205 719.9 635 60.6
FAN22G0589 Fragaria x ananassa HOM05D005523 ORTHO05D007089 2.2e-205 719.5 668 57.5
AL5G13440 Arabidopsis lyrata HOM05D005523 ORTHO05D007089 8.3e-205 717.6 655 58.6
Prupe.1G288300 Prunus persica HOM05D005523 ORTHO05D007089 8.3e-205 717.6 681 58.6
DCAR_026677 Daucus carota HOM05D005523 ORTHO05D007089 4.1e-204 715.3 634 59.3
FvH4_4g29880 Fragaria vesca HOM05D005523 ORTHO05D007089 4.1e-204 715.3 667 57.6
Ca_18798_v3 Cicer arietinum L. HOM05D005523 ORTHO05D007089 9.2e-204 714.1 656 58.7
CARHR145990 Cardamine hirsuta HOM05D005523 ORTHO05D007089 2.1e-203 713.0 640 59.2
Cfa008872 Carpinus fangiana HOM05D005523 ORTHO05D007089 2.1e-203 713.0 653 59.0
Carub.0005s0279 Capsella rubella HOM05D005523 ORTHO05D007089 4.6e-203 711.8 653 58.7
Thhalv10003838m.g Eutrema salsugineum HOM05D005523 ORTHO05D007089 1.3e-202 710.3 658 58.7
FAN17G1793 Fragaria x ananassa HOM05D005523 ORTHO05D007089 5.1e-202 708.4 688 56.0
FAN07G2138 Fragaria x ananassa HOM05D005523 ORTHO05D007089 1.1e-201 707.2 668 57.2
vmacro10430 Vaccinium macrocarpon HOM05D005523 ORTHO05D007089 1.1e-201 707.2 677 57.2
Manes.05G109800 Manihot esculenta HOM05D005523 ORTHO05D007089 9.5e-201 704.1 622 59.5
Rhsim09G0126700 Rhododendron simsii HOM05D005523 ORTHO05D007089 1.6e-200 703.4 672 58.2
Sp2g14490 Schrenkiella parvula HOM05D005523 ORTHO05D007089 2.1e-200 703.0 659 57.8
FAN12G2921 Fragaria x ananassa HOM05D005523 ORTHO05D007089 4.7e-200 701.8 703 54.5
Nitab4.5_0007061g0020 Nicotiana tabacum HOM05D005523 ORTHO05D007089 8.1e-200 701.0 663 57.3
AT2G03667 Arabidopsis thaliana HOM05D005523 ORTHO05D007089 8.9e-199 697.6 654 57.3
Cc03_g11190 Coffea canephora HOM05D005523 ORTHO05D007089 8.9e-199 697.6 516 67.1
Aa31LG2G7010 Aethionema arabicum HOM05D005523 ORTHO05D007089 1.5e-198 696.8 628 59.1
BolC7t43916H Brassica oleracea HOM05D005523 ORTHO05D007089 2.6e-198 696.0 655 57.1
Lj6A778G61 Lonicera japonica HOM05D005523 ORTHO05D007089 2.6e-198 696.0 726 54.4
THA.LOC104805203 Tarenaya hassleriana HOM05D005523 ORTHO05D007089 5.8e-198 694.9 647 58.0
C07p34020 Brassica napus HOM05D005523 ORTHO05D007089 9.9e-198 694.1 653 57.0
Oeu021803.1 Olea europaea HOM05D005523 ORTHO05D007089 1.3e-197 693.7 669 55.3
Hund25171 Selenicereus undatus HOM05D005523 ORTHO05D007089 1.7e-197 693.3 670 56.3
A06p43010 Brassica napus HOM05D005523 ORTHO05D007089 2.2e-197 693.0 655 56.9
Sopen05g007030 Solanum pennellii HOM05D005523 ORTHO05D007089 9.2e-196 687.6 567 62.4
HPP92_001825 Vanilla planifolia HOM05D005523 ORTHO05D007089 2.5e-193 679.5 669 54.7
PGR119G1690 Punica granatum HOM05D005523 ORTHO05D007089 3.1e-191 672.5 637 57.0
AUR62007908 Chenopodium quinoa HOM05D005523 ORTHO05D007089 6.9e-191 671.4 605 57.9
Sc14g0007970 Simmondsia chinensis HOM05D005523 ORTHO05D007089 3.4e-190 669.1 606 57.8
BcaB07g30661 Brassica carinata HOM05D005523 ORTHO05D007089 1.3e-189 667.2 672 54.2
SGA_v2.0_scaffold16G07795 Striga asiatica HOM05D005523 ORTHO05D007089 1.3e-189 667.2 660 54.8
Nitab4.5_0000231g0170 Nicotiana tabacum HOM05D005523 ORTHO05D007089 5.4e-188 661.8 635 57.8
Pp3c13_5080 Physcomitrium patens HOM05D005523 ORTHO05D007089 1.3e-165 587.4 669 48.4
unitig_26.g10286 Utricularia gibba HOM05D005523 ORTHO05D007089 2.5e-164 583.2 653 51.1
Zm00001eb029510 Zea mays HOM05D005523 ORTHO05D007089 1.6e-163 580.5 549 57.2
SMO364G0955 Selaginella moellendorffii HOM05D005523 ORTHO05D007089 2.2e-160 570.1 602 52.7
TAR374G1461 Trochodendron aralioides HOM05D005523 ORTHO05D007089 1.8e-159 567.0 446 67.5
CSS0034602 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 2.8e-152 543.1 418 66.0
AagrBONN_evm.TU.Sc2ySwM_228.676 Anthoceros agrestis HOM05D005523 ORTHO05D007089 5.3e-151 538.9 712 46.5
MBI19_g25293_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 2.0e-150 537.0 639 49.8
Eucgr.G02442 Eucalyptus grandis HOM05D005523 ORTHO05D007089 1.0e-146 524.6 412 66.3
Gohir.A12G160700 Gossypium hirsutum HOM05D005523 ORTHO05D007089 1.6e-134 484.2 366 68.0
Mapoly0013s0146 Marchantia polymorpha HOM05D005523 ORTHO05D007089 2.2e-125 453.8 477 49.9
VMungo0251G0731 Vigna mungo HOM05D005523 ORTHO05D007089 1.4e-122 444.5 286 76.2
Oeu021804.1 Olea europaea HOM05D005523 ORTHO05D007089 4.0e-122 443.0 476 50.2
ATR0177G042 Amborella trichopoda HOM05D005523 ORTHO05D007089 2.8e-115 420.2 537 48.2
Actinidia28650 Actinidia chinensis HOM05D005523 ORTHO05D007089 1.3e-109 401.4 445 51.5
CDE10G0904 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 4.4e-97 359.8 256 71.9
Actinidia36738 Actinidia chinensis HOM05D005523 ORTHO05D007089 4.6e-94 349.7 246 74.0
ClCG05G023660 Citrullus lanatus HOM05D005523 ORTHO05D007089 7.3e-92 342.4 471 42.9
MBI19_g44450_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 9.9e-89 332.0 258 69.4
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 1.2e-86 325.1 326 56.7
PRCOL_00003408 Prasinoderma coloniale HOM05D005523 ORTHO05D007089 1.1e-84 318.5 565 36.3
BcaC06g31164 Brassica carinata HOM05D005523 ORTHO05D006344 4.0e-82 310.1 193 78.8
VMungo0251G1186 Vigna mungo HOM05D005523 ORTHO05D007089 3.2e-79 300.4 397 44.8
CBR_g50115 Chara braunii HOM05D005523 ORTHO05D007089 9.2e-79 298.9 448 39.3
Actinidia12916 Actinidia chinensis HOM05D005523 ORTHO05D007089 7.3e-76 289.3 618 35.9
Actinidia14169 Actinidia chinensis HOM05D005523 ORTHO05D007089 3.6e-75 287.0 187 74.3
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 3.6e-75 287.0 315 51.7
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 3.1e-74 283.9 315 51.4
CDE10G0400 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 4.2e-71 273.5 344 45.3
RcHm_v2.0_Chr7g0182531 Rosa chinensis HOM05D005523 ORTHO05D007089 2.1e-70 271.2 173 76.9
Lsat_1_v5_gn_5_143020 Lactuca sativa HOM05D005523 ORTHO05D007089 2.3e-69 267.7 176 73.9
Lsat_1_v5_gn_7_112061 Lactuca sativa HOM05D005523 ORTHO05D007089 8.7e-69 265.8 307 52.1
Lsat_1_v5_gn_5_70240 Lactuca sativa HOM05D005523 ORTHO05D007089 4.3e-68 263.5 180 73.9
Cpa.g.sc1.134 Carica papaya HOM05D005523 ORTHO05D007089 1.4e-63 248.4 150 76.0
Cre07.g321050 Chlamydomonas reinhardtii HOM05D005523 ORTHO05D007089 3.9e-61 240.4 365 38.4
Cpa.g.sc1.132 Carica papaya HOM05D005523 ORTHO05D007089 1.4e-58 231.9 437 36.6
TAR374G1311 Trochodendron aralioides HOM05D005523 ORTHO05D007089 4.2e-47 193.7 212 51.9
BcaB03g12091 Brassica carinata HOM05D005523 ORTHO05D007089 1.6e-46 191.8 128 71.1
CSS0024141 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 7.2e-39 166.4 231 40.3
CSS0004547 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 2.9e-32 144.4 128 54.7
Os12g0574900 Oryza sativa ssp. japonica HOM05D005523 ORTHO05D007089 4.7e-30 137.1 227 37.9
SEGI_10872 Sequoiadendron giganteum HOM05D005523 ORTHO05D007089 6.7e-29 133.3 97 60.8
CSS0023178 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 7.4e-28 129.8 128 50.8
Lsat_1_v5_gn_7_82480 Lactuca sativa HOM05D005523 ORTHO05D007089 1.9e-23 115.2 147 50.3
EL10Ac6g15009 Beta vulgaris HOM05D005523 ORTHO05D007089 3.2e-23 114.4 214 36.4
CSS0028074 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D026295 1.7e-19 102.1 115 46.1
MBI19_g26864_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 3.1e-18 97.8 201 38.3
CAN.G553.8 Capsicum annuum HOM05D001766 ORTHO05D043404 6.5e-16 90.1 82 52.4
HanXRQChr15g0470871 Helianthus annuus HOM05D005523 ORTHO05D007089 9.4e-15 86.3 75 56.0
Cpa.g.sc1.135 Carica papaya HOM05D005523 ORTHO05D007089 1.4e-13 82.4 53 83.0
CiPaw.04G124200 Carya illinoinensis HOM05D005523 ORTHO05D007089 3.1e-10 71.2 72 47.2
CAN.G602.9 Capsicum annuum HOM05D005523 ORTHO05D007089 1.6e-09 68.9 52 63.5
MCO01G357 Micromonas commoda HOM05D001481 ORTHO05D001865 1.9e-07 62.0 208 25.5
HanXRQChr16g0520621 Helianthus annuus HOM05D005523 ORTHO05D007089 4.7e-06 57.4 53 54.7


User provided reference genes

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