Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 2.5e-52 209.1 165 100.0
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 6.8e-42 174.5 166 84.9
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 1.9e-15 86.7 164 52.4
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 2.4e-15 86.3 158 39.9
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 2.4e-15 86.3 102 49.0
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 4.2e-15 85.5 167 37.1
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 4.2e-15 85.5 164 42.1
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 4.2e-15 85.5 138 41.3
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 5.5e-15 85.1 102 47.1
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 7.1e-15 84.7 158 53.2
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 9.3e-15 84.3 100 50.0
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 1.2e-14 84.0 155 57.4
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 2.1e-14 83.2 99 47.5
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 2.7e-14 82.8 104 47.1
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 3.5e-14 82.4 92 53.3
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 4.6e-14 82.0 158 44.9
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 4.6e-14 82.0 146 49.3
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 6.0e-14 81.6 138 39.1
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 7.9e-14 81.3 117 41.9
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 7.9e-14 81.3 71 57.7
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 1.0e-13 80.9 168 45.8
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 1.0e-13 80.9 147 53.7
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 1.3e-13 80.5 136 39.7
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 1.3e-13 80.5 96 51.0
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 1.3e-13 80.5 105 47.6
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 1.8e-13 80.1 151 45.7
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 1.8e-13 80.1 138 38.4
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 1.8e-13 80.1 140 65.0
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.8e-13 80.1 92 50.0
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 1.8e-13 80.1 71 59.2
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 2.3e-13 79.7 154 46.1
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 3.0e-13 79.3 79 55.7
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 3.0e-13 79.3 99 45.5
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 3.0e-13 79.3 92 53.3
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 3.0e-13 79.3 104 46.2
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 3.0e-13 79.3 73 57.5
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 3.9e-13 79.0 102 45.1
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 3.9e-13 79.0 73 57.5
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 3.9e-13 79.0 98 43.9
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 3.9e-13 79.0 79 50.6
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 5.1e-13 78.6 175 36.0
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 6.7e-13 78.2 117 41.9
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 6.7e-13 78.2 117 41.9
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 6.7e-13 78.2 102 45.1
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 8.7e-13 77.8 96 45.8
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 8.7e-13 77.8 102 44.1
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 8.7e-13 77.8 102 44.1
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 8.7e-13 77.8 103 46.6
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 1.1e-12 77.4 124 38.7
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 1.1e-12 77.4 124 38.7
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 1.1e-12 77.4 124 38.7
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 1.1e-12 77.4 95 45.3
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 1.1e-12 77.4 124 38.7
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 1.1e-12 77.4 100 44.0
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 1.5e-12 77.0 100 44.0
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 1.9e-12 76.6 102 46.1
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 1.9e-12 76.6 102 46.1
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 1.9e-12 76.6 95 44.2
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 1.9e-12 76.6 88 50.0
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 2.5e-12 76.3 82 54.9
HanXRQChr15g0477051 Helianthus annuus HOM05D003853 ORTHO05D004171 2.5e-12 76.3 70 55.7
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 2.5e-12 76.3 90 46.7
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 2.5e-12 76.3 93 50.5
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 2.5e-12 76.3 100 43.0
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 3.3e-12 75.9 102 43.1
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 3.3e-12 75.9 80 51.2
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 3.3e-12 75.9 168 41.7
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 3.3e-12 75.9 80 51.2
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 3.3e-12 75.9 78 53.8
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 3.3e-12 75.9 106 47.2
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 4.3e-12 75.5 96 46.9
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 5.6e-12 75.1 75 53.3
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 7.4e-12 74.7 124 37.9
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 7.4e-12 74.7 105 42.9
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 7.4e-12 74.7 83 49.4
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 7.4e-12 74.7 83 49.4
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 7.4e-12 74.7 70 54.3
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 7.4e-12 74.7 80 52.5
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 9.6e-12 74.3 85 51.8
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 9.6e-12 74.3 95 46.3
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 9.6e-12 74.3 86 53.5
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 9.6e-12 74.3 115 47.8
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 9.6e-12 74.3 78 52.6
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 1.3e-11 73.9 70 52.9
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 1.3e-11 73.9 80 48.8
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 1.6e-11 73.6 76 56.6
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 1.6e-11 73.6 71 52.1
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 1.6e-11 73.6 74 51.4
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.6e-11 73.6 98 49.0
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 1.6e-11 73.6 81 51.9
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 2.1e-11 73.2 95 43.2
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 2.1e-11 73.2 103 43.7
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 2.1e-11 73.2 96 47.9
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 2.8e-11 72.8 101 43.6
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 2.8e-11 72.8 81 55.6
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 2.8e-11 72.8 81 55.6
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 2.8e-11 72.8 87 49.4
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 3.7e-11 72.4 76 47.4
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 3.7e-11 72.4 98 48.0
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 3.7e-11 72.4 92 48.9
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 4.8e-11 72.0 79 46.8
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 4.8e-11 72.0 73 50.7
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 6.2e-11 71.6 77 49.4
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 6.2e-11 71.6 99 43.4
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 8.1e-11 71.2 75 54.7
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 1.1e-10 70.9 102 41.2
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 1.1e-10 70.9 102 41.2
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 1.1e-10 70.9 102 41.2
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.1e-10 70.9 76 48.7
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 1.1e-10 70.9 83 49.4
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 1.1e-10 70.9 75 49.3
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 1.1e-10 70.9 153 35.3
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 1.4e-10 70.5 109 42.2
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 1.4e-10 70.5 103 44.7
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.8e-10 70.1 76 47.4
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.8e-10 70.1 73 50.7
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 1.8e-10 70.1 77 49.4
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.4e-10 69.7 92 45.7
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 2.4e-10 69.7 92 50.0
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 3.1e-10 69.3 73 52.1
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 3.1e-10 69.3 86 47.7
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 3.1e-10 69.3 97 46.4
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 4.0e-10 68.9 102 40.2
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 5.3e-10 68.6 102 40.2
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 5.3e-10 68.6 103 42.7
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 5.3e-10 68.6 102 40.2
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 6.9e-10 68.2 91 47.3
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 6.9e-10 68.2 79 51.9
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 9.0e-10 67.8 74 45.9
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 1.2e-09 67.4 103 42.7
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 1.2e-09 67.4 100 45.0
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 1.5e-09 67.0 66 53.0
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 1.5e-09 67.0 137 70.8
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 1.5e-09 67.0 133 39.1
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 1.5e-09 67.0 137 37.2
Solyc05g012570.3 Solanum lycopersicum HOM05D003853 ORTHO05D004171 1.5e-09 67.0 85 48.2
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 2.0e-09 66.6 139 71.2
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 2.6e-09 66.2 75 49.3
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 2.6e-09 66.2 75 49.3
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 3.4e-09 65.9 73 54.8
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 4.5e-09 65.5 102 44.1
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 5.8e-09 65.1 66 57.6
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 5.8e-09 65.1 84 48.8
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 1.0e-08 64.3 100 46.0
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 2.2e-08 63.2 75 49.3
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 2.9e-08 62.8 151 45.0
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 3.8e-08 62.4 73 49.3
CAN.G1340.8 Capsicum annuum HOM05D003853 ORTHO05D004171 8.4e-08 61.2 89 41.6
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 1.9e-07 60.1 70 51.4
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 3.2e-07 59.3 71 46.5
BraA08t35141Z Brassica rapa HOM05D003853 ORTHO05D004171 5.5e-07 58.5 102 36.3
Ah.03g139150 Amaranthus hybridus HOM05D003853 ORTHO05D004171 7.1e-07 58.2 66 50.0
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 9.3e-07 57.8 65 47.7
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 9.3e-07 57.8 87 44.8
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 1.2e-06 57.4 88 40.9
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.2e-06 57.4 70 52.9
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.1e-06 56.6 66 50.0
Ca_04944_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 2.1e-06 56.6 79 39.2
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 2.7e-06 56.2 69 49.3
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 2.7e-06 56.2 67 50.7
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 3.5e-06 55.8 130 34.6
FAN12G3704 Fragaria x ananassa HOM05D002141 ORTHO05D002119 4.6e-06 55.5 87 42.5
Zm00001eb334140 Zea mays HOM05D003853 ORTHO05D004171 4.6e-06 55.5 77 44.2
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 6.0e-06 55.1 77 42.9
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 6.0e-06 55.1 81 39.5


User provided reference genes

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