Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 0.0e+00 1226.5 660 100.0
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 0.0e+00 1150.2 612 96.7
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 3.8e-261 904.8 574 76.5
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.2e-257 893.3 564 75.5
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 1.8e-255 885.9 551 76.6
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 1.1e-252 876.7 563 74.6
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 3.8e-245 851.7 550 73.6
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 9.5e-244 847.0 550 73.1
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 5.2e-242 841.3 566 70.7
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 2.0e-241 839.3 558 73.5
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 2.6e-241 839.0 558 72.9
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 7.5e-241 837.4 551 74.0
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 1.7e-240 836.3 551 73.0
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 6.4e-240 834.3 556 71.2
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 1.8e-239 832.8 567 71.1
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 3.2e-239 832.0 552 71.7
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 3.2e-239 832.0 550 72.5
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 5.4e-239 831.2 566 70.7
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 9.2e-239 830.5 566 70.8
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 9.2e-239 830.5 558 71.0
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 3.5e-238 828.6 566 70.7
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 7.8e-238 827.4 550 72.4
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 1.3e-237 826.6 550 72.4
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 1.3e-237 826.6 558 70.3
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 1.7e-237 826.2 552 71.2
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 6.6e-237 824.3 550 71.1
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 1.2e-235 820.1 552 72.5
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 1.2e-235 820.1 562 70.8
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.2e-235 820.1 562 70.8
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.2e-235 820.1 562 70.8
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.8e-235 818.9 570 68.9
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 2.8e-235 818.9 552 71.4
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 3.6e-235 818.5 549 71.8
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 6.2e-235 817.8 562 70.6
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 8.0e-235 817.4 568 68.8
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 1.0e-234 817.0 568 68.8
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.0e-234 817.0 575 69.4
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.4e-234 816.6 562 70.5
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 1.8e-234 816.2 567 69.5
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 2.3e-234 815.8 549 70.5
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 2.0e-233 812.8 553 69.8
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 2.6e-233 812.4 563 69.4
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 2.6e-233 812.4 540 73.7
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 4.4e-233 811.6 552 70.7
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 7.5e-233 810.8 554 70.4
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 1.3e-232 810.1 552 69.4
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 4.9e-232 808.1 568 68.5
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 4.9e-232 808.1 555 70.6
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 4.9e-232 808.1 529 73.5
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 4.9e-232 808.1 563 69.3
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 6.4e-232 807.7 549 70.5
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 3.5e-230 802.0 555 70.6
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 6.6e-229 797.7 552 70.1
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 2.5e-228 795.8 563 67.9
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 2.5e-228 795.8 497 76.5
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 4.3e-228 795.0 569 68.7
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 4.3e-228 795.0 561 69.5
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 5.6e-228 794.7 562 67.6
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 2.8e-227 792.3 576 67.9
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 8.1e-227 790.8 553 69.4
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 1.4e-226 790.0 553 69.4
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 3.4e-225 785.4 562 68.1
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 4.4e-225 785.0 578 68.2
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 2.2e-224 782.7 565 68.1
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 2.9e-224 782.3 565 68.1
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 3.7e-224 781.9 552 69.2
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 7.1e-223 777.7 551 68.1
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 3.9e-221 771.9 578 66.8
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 4.3e-220 768.5 559 68.9
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 9.5e-220 767.3 563 66.8
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 9.5e-220 767.3 563 66.8
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 8.1e-219 764.2 547 68.6
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 4.0e-218 761.9 566 65.9
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 4.0e-218 761.9 538 68.0
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 5.2e-218 761.5 554 67.5
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 1.9e-215 753.1 556 65.1
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 2.4e-215 752.7 556 67.4
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 5.4e-215 751.5 556 67.4
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 7.1e-215 751.1 552 67.2
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 3.5e-214 748.8 563 67.1
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 4.6e-214 748.4 507 70.6
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 6.0e-214 748.0 559 66.7
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 6.0e-214 748.0 559 66.7
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 6.0e-214 748.0 559 66.7
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 1.7e-213 746.5 552 67.4
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 6.6e-213 744.6 561 67.2
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 1.5e-212 743.4 563 66.8
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 3.3e-212 742.3 551 66.1
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 1.2e-211 740.3 576 65.8
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 1.2e-211 740.3 552 67.0
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 3.6e-211 738.8 554 65.5
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 3.4e-209 732.3 550 66.5
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 7.6e-209 731.1 586 64.0
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 4.2e-207 725.3 550 65.8
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 5.4e-207 724.9 550 66.0
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 1.6e-206 723.4 532 68.2
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 4.6e-206 721.8 550 65.6
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 3.0e-205 719.2 544 63.2
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 3.9e-205 718.8 547 64.9
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 1.3e-203 713.8 564 61.7
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 2.8e-203 712.6 557 64.1
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 1.8e-202 709.9 552 64.1
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 2.1e-198 696.4 558 61.8
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 3.5e-198 695.7 566 63.6
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 3.5e-198 695.7 566 63.6
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 3.5e-198 695.7 566 63.6
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 3.7e-195 685.6 563 61.8
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 5.3e-194 681.8 568 60.2
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 1.2e-193 680.6 564 60.1
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 1.3e-192 677.2 499 67.1
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 7.1e-191 671.4 563 64.1
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 6.0e-190 668.3 571 61.5
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 6.0e-190 668.3 576 60.1
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 4.3e-188 662.1 566 61.3
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 1.6e-187 660.2 517 64.8
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 9.0e-186 654.4 581 60.1
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 1.0e-184 651.0 552 61.2
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 2.5e-180 636.3 553 59.1
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 6.9e-178 628.2 555 58.6
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 4.5e-169 599.0 553 57.9
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 1.7e-168 597.0 587 56.2
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 3.0e-165 586.3 445 65.4
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 6.9e-162 575.1 560 53.8
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 3.6e-158 562.8 560 53.4
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 1.7e-152 543.9 406 66.3
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 1.0e-149 534.6 429 62.7
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 1.4e-149 534.3 541 54.3
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 3.8e-136 489.6 312 74.7
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 1.7e-128 464.2 383 57.4
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 4.3e-127 459.5 339 66.4
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 9.8e-124 448.4 287 75.6
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 2.1e-118 430.6 397 52.6
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 1.1e-85 322.0 353 51.0
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 3.8e-67 260.4 548 31.6
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 1.2e-65 255.4 400 42.0
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 2.8e-62 244.2 179 65.4
BcaC07g40608 Brassica carinata HOM05D003135 ORTHO05D006258 7.7e-44 183.0 167 59.3
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 1.1e-42 179.1 219 44.7
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 7.2e-42 176.4 154 57.8
SMO115G0102 Selaginella moellendorffii HOM05D004961 ORTHO05D037335 3.6e-33 147.5 294 32.3
BcaNung07137 Brassica carinata HOM05D004961 ORTHO05D006258 2.7e-25 121.3 76 72.4
BcaNung07139 Brassica carinata HOM05D004961 ORTHO05D006258 1.7e-22 112.1 96 61.5
HanXRQChr16g0519231 Helianthus annuus HOM05D004961 ORTHO05D006258 4.1e-21 107.5 101 53.5
AagrBONN_evm.TU.Sc2ySwM_344.1101 Anthoceros agrestis HOM05D004961 ORTHO05D006258 2.0e-20 105.1 168 35.1
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 3.6e-17 94.4 91 61.5
MELO3C015747.2 Cucumis melo HOM05D004961 ORTHO05D044953 6.3e-14 83.6 77 53.2
HanXRQChr12g0366651 Helianthus annuus HOM05D001845 ORTHO05D001878 3.4e-07 61.2 58 56.9
unitig_8.g3389 Utricularia gibba HOM05D004961 ORTHO05D006258 4.9e-06 57.4 43 58.1
BcaC07g40607 Brassica carinata HOM05D003135 ORTHO05D023343 6.4e-06 57.0 39 69.2


User provided reference genes

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