Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G4795 Papaver somniferum HOM05D005047 ORTHO05D006540 7.5e-115 417.2 205 100.0
PSO782G5131 Papaver somniferum HOM05D005047 ORTHO05D006540 9.2e-113 410.2 205 98.0
CiPaw.01G126600 Carya illinoinensis HOM05D005047 ORTHO05D006540 1.6e-101 372.9 202 85.6
Ciclev10005905m.g Citrus clementina HOM05D005047 ORTHO05D006540 3.1e-100 368.6 206 86.9
TWI73G0442 Tripterygium wilfordii HOM05D005047 ORTHO05D006540 8.9e-100 367.1 204 85.3
Lalb_Chr01g0010841 Lupinus albus HOM05D005047 ORTHO05D006540 3.4e-99 365.2 202 85.6
Cc03_g07220 Coffea canephora HOM05D005047 ORTHO05D006540 4.4e-99 364.8 196 86.7
Haze_11554 Corylus avellana HOM05D005047 ORTHO05D006540 4.4e-99 364.8 202 85.6
PGR142G1511 Punica granatum HOM05D005047 ORTHO05D006540 9.9e-99 363.6 198 86.9
Medtr1g047390 Medicago truncatula HOM05D005047 ORTHO05D006540 3.8e-98 361.7 202 85.6
CANSAT78G0753 Cannabis sativa HOM05D005047 ORTHO05D006540 4.9e-98 361.3 198 85.9
CANSAT78G2209 Cannabis sativa HOM05D005047 ORTHO05D006540 4.9e-98 361.3 198 85.9
RcHm_v2.0_Chr4g0396911 Rosa chinensis HOM05D005047 ORTHO05D006540 8.4e-98 360.5 201 85.6
Psat6g048720 Pisum sativum HOM05D005047 ORTHO05D006540 1.9e-97 359.4 201 86.1
Glyma.10G125100 Glycine max HOM05D005047 ORTHO05D006540 2.4e-97 359.0 200 85.5
Gorai.006G219600 Gossypium raimondii HOM05D005047 ORTHO05D006540 3.2e-97 358.6 197 85.3
Thecc.04G211900 Theobroma cacao HOM05D005047 ORTHO05D006540 4.1e-97 358.2 197 86.3
Duzib212G0386 Durio zibethinus HOM05D005047 ORTHO05D006540 5.4e-97 357.8 198 85.4
Dinv38281 Davidia involucrata HOM05D005047 ORTHO05D006540 7.1e-97 357.5 205 84.9
Gohir.A09G202200 Gossypium hirsutum HOM05D005047 ORTHO05D006540 7.1e-97 357.5 198 84.8
Ca_11862_v3 Cicer arietinum L. HOM05D005047 ORTHO05D006540 9.2e-97 357.1 202 84.7
Gohir.D09G196200 Gossypium hirsutum HOM05D005047 ORTHO05D006540 9.2e-97 357.1 197 85.3
CSS0002501 Camellia sinensis var. sinensis HOM05D005047 ORTHO05D006540 1.6e-96 356.3 205 83.4
Phvul.007G236950 Phaseolus vulgaris HOM05D005047 ORTHO05D006540 2.1e-96 355.9 202 83.2
Sc13g0002770 Simmondsia chinensis HOM05D005047 ORTHO05D006540 2.1e-96 355.9 203 81.3
PGSC0003DMG400029615 Solanum tuberosum HOM05D005047 ORTHO05D006540 3.5e-96 355.1 205 82.9
COL.COLO4_34082 Corchorus olitorius HOM05D005047 ORTHO05D006540 4.6e-96 354.8 198 84.8
Nitab4.5_0010267g0010 Nicotiana tabacum HOM05D005047 ORTHO05D006540 7.8e-96 354.0 206 83.5
Potri.001G052400 Populus trichocarpa HOM05D005047 ORTHO05D006540 1.0e-95 353.6 197 85.3
Prupe.1G060800 Prunus persica HOM05D005047 ORTHO05D006540 1.0e-95 353.6 198 84.3
Sopen09g034350 Solanum pennellii HOM05D005047 ORTHO05D006540 1.0e-95 353.6 206 82.5
GSVIVG01029046001 Vitis vinifera HOM05D005047 ORTHO05D006540 1.0e-95 353.6 202 83.7
Potri.003G175800 Populus trichocarpa HOM05D005047 ORTHO05D006540 1.7e-95 352.8 202 82.2
Eucgr.H00094 Eucalyptus grandis HOM05D005047 ORTHO05D006540 2.3e-95 352.4 201 83.6
Glyma.20G077400 Glycine max HOM05D005047 ORTHO05D006540 2.3e-95 352.4 200 83.5
Lj6g0004838 Lotus japonicus HOM05D005047 ORTHO05D006540 3.0e-95 352.1 202 82.7
EL10Ac3g06787 Beta vulgaris HOM05D005047 ORTHO05D006540 5.1e-95 351.3 203 81.8
Aa31LG9G3930 Aethionema arabicum HOM05D005047 ORTHO05D006540 1.1e-94 350.1 198 82.8
Solyc09g091420.4 Solanum lycopersicum HOM05D005047 ORTHO05D006540 1.5e-94 349.7 206 81.6
HanXRQChr01g0022691 Helianthus annuus HOM05D005047 ORTHO05D006540 1.9e-94 349.4 203 81.3
Cpa.g.sc59.91 Carica papaya HOM05D005047 ORTHO05D006540 3.3e-94 348.6 206 80.1
AL7G42780 Arabidopsis lyrata HOM05D005047 ORTHO05D006540 4.3e-94 348.2 204 79.9
Sed0007809 Sechium edule HOM05D005047 ORTHO05D006540 7.3e-94 347.4 193 85.0
Thhalv10026260m.g Eutrema salsugineum HOM05D005047 ORTHO05D006540 9.6e-94 347.1 199 81.4
THA.LOC104808728 Tarenaya hassleriana HOM05D005047 ORTHO05D006540 1.6e-93 346.3 197 82.7
BcaB02g08656 Brassica carinata HOM05D005047 ORTHO05D006540 2.1e-93 345.9 198 81.8
ECA248G2813 Erigeron canadensis HOM05D005047 ORTHO05D006540 6.2e-93 344.4 197 82.7
Sp7g11500 Schrenkiella parvula HOM05D005047 ORTHO05D006540 1.1e-92 343.6 199 81.4
HPP92_015205 Vanilla planifolia HOM05D005047 ORTHO05D006540 1.1e-92 343.6 203 79.8
AT4G13720 Arabidopsis thaliana HOM05D005047 ORTHO05D006540 1.4e-92 343.2 196 81.1
C04p42210 Brassica napus HOM05D005047 ORTHO05D006540 4.0e-92 341.7 199 81.4
Migut.N00337 Erythranthe guttata HOM05D005047 ORTHO05D006540 5.2e-92 341.3 199 82.9
Sabra03G0128700 Salix brachista HOM05D005047 ORTHO05D006540 8.9e-92 340.5 218 77.1
AL5G12130 Arabidopsis lyrata HOM05D005047 ORTHO05D006540 1.2e-91 340.1 204 78.9
TAR633G1642 Trochodendron aralioides HOM05D005047 ORTHO05D006540 1.5e-91 339.7 207 82.1
CsaV3_3G011290 Cucumis sativus L. HOM05D005047 ORTHO05D006540 2.6e-91 339.0 193 83.4
CDE04G3429 Ceratophyllum demersum HOM05D005047 ORTHO05D006540 5.8e-91 337.8 193 83.4
Lj6A611T47 Lonicera japonica HOM05D005047 ORTHO05D006540 5.8e-91 337.8 205 81.5
Hma1.2p1_0903F.1_g235140 Hydrangea macrophylla HOM05D005047 ORTHO05D006540 7.6e-91 337.4 205 79.5
BcaC02g09395 Brassica carinata HOM05D005047 ORTHO05D006540 4.2e-89 331.6 191 82.2
Zm00001eb046670 Zea mays HOM05D005047 ORTHO05D006540 5.4e-89 331.3 202 78.2
A04p08470 Brassica napus HOM05D005047 ORTHO05D006540 7.1e-89 330.9 199 80.4
BolC4t25799H Brassica oleracea HOM05D005047 ORTHO05D006540 7.1e-89 330.9 199 80.4
BraA04t16537Z Brassica rapa HOM05D005047 ORTHO05D006540 7.1e-89 330.9 199 80.4
Os10g0457500 Oryza sativa ssp. japonica HOM05D005047 ORTHO05D006540 2.1e-88 329.3 195 79.0
SGA_v2.0_scaffold2G00831 Striga asiatica HOM05D005047 ORTHO05D006540 4.6e-88 328.2 228 72.8
TPR.G10100 Trifolium pratense HOM05D005047 ORTHO05D006540 1.7e-87 326.2 173 87.3
unitig_749.g13975 Utricularia gibba HOM05D005047 ORTHO05D006540 6.6e-87 324.3 211 75.4
SalBow3G2150 Salvia bowleyana HOM05D005047 ORTHO05D006540 2.5e-86 322.4 227 71.4
vmacro00514 Vaccinium macrocarpon HOM05D005047 ORTHO05D006540 1.3e-85 320.1 204 79.4
Hund19253 Selenicereus undatus HOM05D005047 ORTHO05D006540 2.8e-85 318.9 195 80.5
Manes.03G152700 Manihot esculenta HOM05D005047 ORTHO05D006540 4.8e-85 318.2 201 74.6
Mapoly0026s0018 Marchantia polymorpha HOM05D005047 ORTHO05D006540 1.8e-84 316.2 186 78.5
VMungo0720G0344 Vigna mungo HOM05D005047 ORTHO05D006540 4.0e-84 315.1 254 64.2
AUR62032663 Chenopodium quinoa HOM05D005047 ORTHO05D006540 5.3e-84 314.7 198 78.3
Manes.15G048800 Manihot esculenta HOM05D005047 ORTHO05D006540 6.9e-84 314.3 195 74.9
FAN12G1457 Fragaria x ananassa HOM05D005047 ORTHO05D006540 2.0e-83 312.8 201 77.6
FAN07G0410 Fragaria x ananassa HOM05D005047 ORTHO05D006540 7.6e-83 310.8 201 77.1
Lsat_1_v5_gn_0_4860 Lactuca sativa HOM05D005047 ORTHO05D006540 1.7e-82 309.7 243 65.4
Ah.13g075240 Amaranthus hybridus HOM05D005047 ORTHO05D006540 1.4e-81 306.6 202 75.2
Pp3c16_19640 Physcomitrium patens HOM05D005047 ORTHO05D006540 1.4e-81 306.6 196 75.5
SMO367G0232 Selaginella moellendorffii HOM05D005047 ORTHO05D006540 5.4e-81 304.7 195 73.8
Nitab4.5_0010728g0010 Nicotiana tabacum HOM05D005047 ORTHO05D006540 7.1e-81 304.3 209 74.2
ClCG05G003600 Citrullus lanatus HOM05D005047 ORTHO05D006540 1.0e-79 300.4 193 77.7
Aa31LG9G3940 Aethionema arabicum HOM05D005047 ORTHO05D006540 3.3e-78 295.4 220 65.0
Oeu006715.2 Olea europaea HOM05D005047 ORTHO05D006540 1.4e-76 290.0 209 69.9
AagrBONN_evm.TU.Sc2ySwM_344.3277 Anthoceros agrestis HOM05D005047 ORTHO05D006540 1.5e-75 286.6 182 73.1
CAN.G500.97 Capsicum annuum HOM05D005047 ORTHO05D006540 2.0e-75 286.2 160 83.1
AUR62035305 Chenopodium quinoa HOM05D005047 ORTHO05D006540 2.6e-75 285.8 261 59.4
Carub.0007s2874 Capsella rubella HOM05D005047 ORTHO05D006540 7.6e-75 284.3 160 81.2
Dinv29555 Davidia involucrata HOM05D005047 ORTHO05D006540 2.2e-74 282.7 191 76.4
Nn3g19880 Nelumbo nucifera HOM05D005047 ORTHO05D006540 2.4e-73 279.3 206 69.4
ATR0088G035 Amborella trichopoda HOM05D005047 ORTHO05D006540 5.3e-68 261.5 142 84.5
Peaxi162Scf00047g01312 Petunia axillaris HOM05D005047 ORTHO05D006540 4.5e-67 258.5 205 64.4
Actinidia37393 Actinidia chinensis HOM05D005047 ORTHO05D006540 4.9e-66 255.0 210 66.2
Atru.chr4.1794 Acer truncatum HOM05D005047 ORTHO05D006540 1.4e-65 253.4 135 85.2
MCO04G006 Micromonas commoda HOM05D005047 ORTHO05D006540 3.5e-64 248.8 174 67.8
Cre02.g095089 Chlamydomonas reinhardtii HOM05D005047 ORTHO05D006540 4.6e-64 248.4 180 65.6
Zm00001eb377030 Zea mays HOM05D005047 ORTHO05D006540 8.7e-63 244.2 141 77.3
MBI07_g19553_MAGBIO Magnolia biondii HOM05D005047 ORTHO05D006540 1.1e-62 243.8 225 60.4
Aqoxy2G03810 Aquilegia oxysepala HOM05D005047 ORTHO05D006540 2.5e-62 242.7 205 63.4
SHI24117 Sapria himalayana HOM05D005047 ORTHO05D006540 2.4e-60 236.1 196 59.2
Rhsim09G0049500 Rhododendron simsii HOM05D005047 ORTHO05D006540 6.1e-56 221.5 138 76.1
arahy.Tifrunner.gnm1.ann1.BK86JE Arachis hypogaea HOM05D005047 ORTHO05D006540 1.0e-55 220.7 195 61.5
PRCOL_00006994 Prasinoderma coloniale HOM05D005047 ORTHO05D006540 6.7e-55 218.0 180 58.9
Zm00001eb086240 Zea mays HOM05D005047 ORTHO05D006540 6.7e-55 218.0 116 83.6
Zm00001eb102100 Zea mays HOM05D005047 ORTHO05D006540 3.7e-53 212.2 141 70.9
QL06p023224 Quercus lobata HOM05D005047 ORTHO05D006540 4.5e-51 205.3 112 82.1
CARHR219510 Cardamine hirsuta HOM05D005047 ORTHO05D006540 1.9e-49 199.9 138 68.8
MD13G1230900 Malus domestica HOM05D005047 ORTHO05D006540 4.2e-49 198.7 108 81.5
Cfa024488 Carpinus fangiana HOM05D005047 ORTHO05D006540 1.2e-48 197.2 178 53.9
arahy.Tifrunner.gnm1.ann1.0X932T Arachis hypogaea HOM05D005047 ORTHO05D006540 1.6e-48 196.8 112 78.6
Sed0007961 Sechium edule HOM05D005047 ORTHO05D006540 2.3e-47 193.0 180 60.0
Cre13.g568950 Chlamydomonas reinhardtii HOM05D005047 ORTHO05D006540 2.0e-43 179.9 171 51.5
Zm00001eb177140 Zea mays HOM05D005047 ORTHO05D006540 7.4e-38 161.4 103 70.9
QL06p023220 Quercus lobata HOM05D005047 ORTHO05D006540 2.2e-37 159.8 84 92.9
Carub.0007s2873 Capsella rubella HOM05D005047 ORTHO05D006540 2.8e-37 159.5 97 74.2
DCAR_002273 Daucus carota HOM05D005047 ORTHO05D006540 7.0e-36 154.8 90 84.4
TWI09G0343 Tripterygium wilfordii HOM05D005047 ORTHO05D006540 9.1e-36 154.5 97 72.2
FvH4_4g05750 Fragaria vesca HOM05D005047 ORTHO05D006540 5.9e-35 151.8 89 86.5
MELO3C031602.2 Cucumis melo HOM05D005047 ORTHO05D006540 7.7e-35 151.4 81 91.4
MSTRG.21943 Avicennia marina HOM05D005047 ORTHO05D006540 1.3e-34 150.6 92 81.5
TAR636G1612 Trochodendron aralioides HOM05D005047 ORTHO05D006540 2.5e-33 146.4 83 86.7
Zm00001eb180620 Zea mays HOM05D005047 ORTHO05D006540 2.3e-31 139.8 88 70.5
Zm00001eb425490 Zea mays HOM05D005047 ORTHO05D006540 8.8e-31 137.9 74 79.7
FAN17G1156 Fragaria x ananassa HOM05D005047 ORTHO05D006540 1.4e-23 114.0 66 77.3
Sabra01G0036900 Salix brachista HOM05D005047 ORTHO05D006540 1.5e-17 94.0 48 85.4
SEGI_09208 Sequoiadendron giganteum HOM05D005047 ORTHO05D006540 1.5e-17 94.0 67 65.7
Medtr1g047400 Medicago truncatula HOM05D005047 ORTHO05D006540 6.8e-15 85.1 61 70.5
CBR_g49288 Chara braunii HOM05D005047 ORTHO05D006540 8.8e-15 84.7 54 68.5
MCO12G133 Micromonas commoda HOM05D005047 ORTHO05D049269 4.4e-14 82.4 196 30.6
PRCOL_00003939 Prasinoderma coloniale HOM05D005047 ORTHO05D049269 1.4e-12 77.4 215 30.7
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 4.1e-12 75.9 43 86.0
EL10Ac7g17560 Beta vulgaris HOM05D005047 ORTHO05D006373 9.2e-12 74.7 38 86.8
EL10Ac6g14438 Beta vulgaris HOM05D005047 ORTHO05D006540 4.5e-11 72.4 38 84.2
FvH4_6g44040 Fragaria vesca HOM05D005047 ORTHO05D006540 5.9e-11 72.0 39 84.6
Glyma.12G173400 Glycine max HOM05D005047 ORTHO05D006540 6.6e-10 68.6 61 62.3
TPR.G40557 Trifolium pratense HOM05D005047 ORTHO05D006540 6.6e-10 68.6 46 78.3
Duzib268G0889 Durio zibethinus HOM05D005047 ORTHO05D006540 1.1e-09 67.8 81 45.7
arahy.Tifrunner.gnm1.ann1.FRRS2Q Arachis hypogaea HOM05D005047 ORTHO05D084578 1.5e-09 67.4 66 51.5
FvH4_5g32911 Fragaria vesca HOM05D005047 ORTHO05D006540 1.5e-09 67.4 33 93.9
FAN01G1709 Fragaria x ananassa HOM05D005047 ORTHO05D006540 1.9e-09 67.0 39 79.5
FAN26G2286 Fragaria x ananassa HOM05D005047 ORTHO05D006540 1.4e-07 60.8 34 85.3
FAN27G1012 Fragaria x ananassa HOM05D029863 ORTHO05D006540 5.2e-07 58.9 30 90.0
CsaV3_6G019130 Cucumis sativus L. HOM05D005047 ORTHO05D006540 1.2e-06 57.8 65 53.8


User provided reference genes

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