Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G4621 Papaver somniferum HOM05D006041 ORTHO05D007473 2.0e-264 915.2 476 100.0
PSO017G0247 Papaver somniferum HOM05D006041 ORTHO05D007473 4.0e-260 901.0 476 98.1
Cfa015002 Carpinus fangiana HOM05D006041 ORTHO05D007473 7.1e-132 474.9 490 54.9
Dinv26256 Davidia involucrata HOM05D006041 ORTHO05D007473 1.6e-131 473.8 477 54.9
COL.COLO4_16567 Corchorus olitorius HOM05D006041 ORTHO05D007473 1.0e-130 471.1 485 55.9
Haze_10912 Corylus avellana HOM05D006041 ORTHO05D007473 5.1e-130 468.8 490 54.9
Nn4g24305 Nelumbo nucifera HOM05D006041 ORTHO05D007473 8.6e-130 468.0 482 55.6
TAR629G0174 Trochodendron aralioides HOM05D006041 ORTHO05D007473 1.9e-129 466.8 479 56.8
MBI19_g21093_MAGBIO Magnolia biondii HOM05D006041 ORTHO05D007473 2.1e-128 463.4 477 53.7
TAR371G0590 Trochodendron aralioides HOM05D006041 ORTHO05D007473 1.8e-127 460.3 486 55.3
Sabra08G0102300 Salix brachista HOM05D006041 ORTHO05D007473 1.2e-126 457.6 482 54.6
Haze_10913 Corylus avellana HOM05D006041 ORTHO05D007473 9.9e-126 454.5 516 52.1
HanXRQChr08g0212441 Helianthus annuus HOM05D006041 ORTHO05D007473 2.2e-125 453.4 483 51.6
Manes.15G133200 Manihot esculenta HOM05D006041 ORTHO05D007473 1.1e-124 451.1 485 53.6
Cc11_g08020 Coffea canephora HOM05D006041 ORTHO05D007473 3.2e-124 449.5 484 52.5
Duzib268G1057 Durio zibethinus HOM05D006041 ORTHO05D007473 4.1e-124 449.1 493 53.8
Thecc.02G290600 Theobroma cacao HOM05D006041 ORTHO05D007473 4.1e-124 449.1 483 54.0
CSS0021041 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 2.1e-123 446.8 480 52.3
CSS0021655 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 2.1e-123 446.8 480 52.3
Rhsim09G0037900 Rhododendron simsii HOM05D006041 ORTHO05D007473 1.0e-122 444.5 494 52.0
Lsat_1_v5_gn_8_45641 Lactuca sativa HOM05D006041 ORTHO05D007473 2.3e-122 443.4 477 51.8
Oeu016281.1 Olea europaea HOM05D006041 ORTHO05D007473 6.6e-122 441.8 487 53.0
CsaV3_5G028000 Cucumis sativus L. HOM05D006041 ORTHO05D007473 8.6e-122 441.4 477 52.2
TWI74G1002 Tripterygium wilfordii HOM05D006041 ORTHO05D007473 9.6e-121 438.0 488 52.5
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 4.7e-120 435.6 482 51.5
Gorai.005G158800 Gossypium raimondii HOM05D006041 ORTHO05D007473 8.1e-120 434.9 481 53.0
Medtr8g104930 Medicago truncatula HOM05D006041 ORTHO05D007473 1.1e-119 434.5 474 51.5
Ciclev10015068m.g Citrus clementina HOM05D006041 ORTHO05D007473 1.8e-119 433.7 487 52.0
MELO3C005281.2 Cucumis melo HOM05D006041 ORTHO05D007473 2.4e-119 433.3 476 51.1
Eucgr.G02114 Eucalyptus grandis HOM05D006041 ORTHO05D007473 4.0e-119 432.6 477 50.3
vmacro00556 Vaccinium macrocarpon HOM05D006041 ORTHO05D007473 4.0e-119 432.6 481 53.0
Lj6A740T67 Lonicera japonica HOM05D006041 ORTHO05D007473 3.4e-118 429.5 476 51.3
Duzib251G0740 Durio zibethinus HOM05D006041 ORTHO05D007473 4.4e-118 429.1 484 52.1
Lalb_Chr05g0222281 Lupinus albus HOM05D006041 ORTHO05D007473 5.8e-118 428.7 481 52.2
Nitab4.5_0009602g0010 Nicotiana tabacum HOM05D006041 ORTHO05D007473 2.9e-117 426.4 475 53.1
PGR142G4228 Punica granatum HOM05D006041 ORTHO05D007473 2.9e-117 426.4 480 51.7
Solyc01g005430.3 Solanum lycopersicum HOM05D006041 ORTHO05D007473 2.9e-117 426.4 469 53.9
Gohir.A01G147900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 3.8e-117 426.0 474 53.0
Lj4g0006027 Lotus japonicus HOM05D006041 ORTHO05D007473 3.8e-117 426.0 473 52.6
MD13G1029800 Malus domestica HOM05D006041 ORTHO05D007473 4.9e-117 425.6 490 50.2
SalBow2G0340 Salvia bowleyana HOM05D006041 ORTHO05D007473 4.9e-117 425.6 477 50.3
Prupe.1G331600 Prunus persica HOM05D006041 ORTHO05D007473 8.4e-117 424.9 487 50.1
EL10Ac6g15713 Beta vulgaris HOM05D006041 ORTHO05D007473 1.1e-116 424.5 521 48.9
Phvul.002G319700 Phaseolus vulgaris HOM05D006041 ORTHO05D007473 2.4e-116 423.3 477 52.4
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 3.2e-116 422.9 485 50.7
DCAR_007323 Daucus carota HOM05D006041 ORTHO05D007473 5.4e-116 422.2 488 51.6
Nitab4.5_0000238g0060 Nicotiana tabacum HOM05D006041 ORTHO05D007473 7.1e-116 421.8 473 53.3
ECA233G3443 Erigeron canadensis HOM05D006041 ORTHO05D007473 9.3e-116 421.4 490 50.2
C07p32270 Brassica napus HOM05D006041 ORTHO05D007473 1.6e-115 420.6 487 49.5
BcaC06g34139 Brassica carinata HOM05D006041 ORTHO05D007473 2.7e-115 419.9 489 49.5
BolC7t43765H Brassica oleracea HOM05D006041 ORTHO05D007473 2.7e-115 419.9 489 49.5
Glyma.08G042900 Glycine max HOM05D006041 ORTHO05D007473 4.6e-115 419.1 478 50.8
MD16G1020600 Malus domestica HOM05D006041 ORTHO05D007473 6.0e-115 418.7 508 48.2
RcHm_v2.0_Chr4g0443331 Rosa chinensis HOM05D006041 ORTHO05D007473 6.0e-115 418.7 486 50.2
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 5.1e-114 415.6 475 49.7
TPR.G32714 Trifolium pratense HOM05D006041 ORTHO05D007473 5.1e-114 415.6 473 48.6
AUR62003915 Chenopodium quinoa HOM05D006041 ORTHO05D007473 6.6e-114 415.2 498 48.8
AT2G01650 Arabidopsis thaliana HOM05D006041 ORTHO05D007473 5.6e-113 412.1 471 49.9
Gohir.D01G141100 Gossypium hirsutum HOM05D006041 ORTHO05D007473 5.6e-113 412.1 470 50.9
Gorai.002G173400 Gossypium raimondii HOM05D006041 ORTHO05D007473 5.6e-113 412.1 470 50.6
Sopen01g001440 Solanum pennellii HOM05D006041 ORTHO05D007473 9.6e-113 411.4 473 52.6
PGSC0003DMG400032118 Solanum tuberosum HOM05D006041 ORTHO05D007473 1.3e-112 411.0 474 52.3
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 1.3e-112 411.0 490 47.6
VMungo0251G2799 Vigna mungo HOM05D006041 ORTHO05D007473 2.1e-112 410.2 488 50.2
Sc03g0001760 Simmondsia chinensis HOM05D006041 ORTHO05D007473 3.6e-112 409.5 501 48.7
A06p44210 Brassica napus HOM05D006041 ORTHO05D007473 4.8e-112 409.1 471 49.9
Atru.chr11.510 Acer truncatum HOM05D006041 ORTHO05D007473 6.2e-112 408.7 482 48.3
THA.LOC104805081 Tarenaya hassleriana HOM05D006041 ORTHO05D007473 6.2e-112 408.7 487 49.5
Psat7g009240 Pisum sativum HOM05D006041 ORTHO05D007473 1.1e-111 407.9 495 47.3
BcaC06g31287 Brassica carinata HOM05D006041 ORTHO05D007473 1.4e-111 407.5 487 48.7
Ca_17289_v3 Cicer arietinum L. HOM05D006041 ORTHO05D007473 1.8e-111 407.1 409 53.5
Sp2g13100 Schrenkiella parvula HOM05D006041 ORTHO05D007473 2.4e-111 406.8 489 48.3
AL5G10750 Arabidopsis lyrata HOM05D006041 ORTHO05D007473 3.1e-111 406.4 475 49.3
CAN.G1130.10 Capsicum annuum HOM05D006041 ORTHO05D007473 5.3e-111 405.6 511 47.9
Aa31LG2G8250 Aethionema arabicum HOM05D006041 ORTHO05D007473 2.6e-110 403.3 482 49.4
CARHR144220 Cardamine hirsuta HOM05D006041 ORTHO05D007473 4.5e-110 402.5 492 47.4
Carub.0005s0060 Capsella rubella HOM05D006041 ORTHO05D007473 5.8e-110 402.1 487 48.9
Peaxi162Scf00655g00023 Petunia axillaris HOM05D006041 ORTHO05D007473 7.6e-110 401.7 466 49.8
arahy.Tifrunner.gnm1.ann1.BAL5EB Arachis hypogaea HOM05D006041 ORTHO05D007473 9.9e-110 401.4 474 48.1
BraA06t27296Z Brassica rapa HOM05D006041 ORTHO05D007473 9.9e-110 401.4 481 48.9
FvH4_4g33820 Fragaria vesca HOM05D006041 ORTHO05D007473 3.8e-109 399.4 473 50.5
Glyma.05G235400 Glycine max HOM05D006041 ORTHO05D007473 8.4e-109 398.3 478 49.6
Migut.E00465 Erythranthe guttata HOM05D006041 ORTHO05D007473 1.1e-108 397.9 482 47.3
ClCG01G006460 Citrullus lanatus HOM05D006041 ORTHO05D007473 1.9e-108 397.1 476 49.8
ATR0753G012 Amborella trichopoda HOM05D006041 ORTHO05D007473 1.2e-107 394.4 491 49.1
FAN12G3784 Fragaria x ananassa HOM05D006041 ORTHO05D007473 6.0e-107 392.1 477 49.5
FAN17G0347 Fragaria x ananassa HOM05D006041 ORTHO05D007473 1.0e-106 391.3 481 48.4
Ah.03g145700 Amaranthus hybridus HOM05D006041 ORTHO05D007473 3.9e-106 389.4 504 47.4
arahy.Tifrunner.gnm1.ann1.IVEQ23 Arachis hypogaea HOM05D006041 ORTHO05D007473 6.7e-106 388.7 471 47.3
Manes.17G082400 Manihot esculenta HOM05D006041 ORTHO05D007473 8.7e-106 388.3 475 49.5
FAN22G1094 Fragaria x ananassa HOM05D006041 ORTHO05D007473 2.1e-104 383.6 488 48.2
Potri.008G133700 Populus trichocarpa HOM05D006041 ORTHO05D007473 5.3e-103 379.0 402 54.7
CiPaw.05G190300 Carya illinoinensis HOM05D006041 ORTHO05D007473 3.8e-101 372.9 405 53.6
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 4.2e-100 369.4 486 46.7
Dinv18641 Davidia involucrata HOM05D006041 ORTHO05D007473 1.2e-99 367.9 427 50.6
CDE07G0862 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 6.0e-99 365.5 473 48.2
Sed0015632 Sechium edule HOM05D006041 ORTHO05D007473 3.0e-98 363.2 490 45.3
QL03p034952 Quercus lobata HOM05D006041 ORTHO05D007473 1.1e-97 361.3 428 51.2
unitig_27.g25310 Utricularia gibba HOM05D006041 ORTHO05D007473 1.9e-97 360.5 471 44.6
Gohir.A03G117900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 1.9e-92 344.0 417 49.4
Gohir.D02G141500 Gossypium hirsutum HOM05D006041 ORTHO05D007473 2.1e-91 340.5 404 50.5
AUR62038228 Chenopodium quinoa HOM05D006041 ORTHO05D007473 1.3e-90 337.8 480 44.0
Aqoxy3G00037 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 4.3e-89 332.8 499 43.5
Sed0013468 Sechium edule HOM05D006041 ORTHO05D007473 2.2e-80 303.9 336 49.4
Zm00001eb099250 Zea mays HOM05D006041 ORTHO05D007473 1.4e-76 291.2 480 40.8
SEGI_21307 Sequoiadendron giganteum HOM05D006041 ORTHO05D007473 2.7e-75 287.0 413 41.9
SGA_v2.0_scaffold151G36726 Striga asiatica HOM05D006041 ORTHO05D007473 5.7e-73 279.3 423 40.4
Zm00001eb312180 Zea mays HOM05D006041 ORTHO05D007473 6.5e-69 265.8 476 39.1
CDE06G1197 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 7.2e-68 262.3 471 40.3
Hma1.2p1_0089F.1_g045430 Hydrangea macrophylla HOM05D006041 ORTHO05D007473 3.3e-65 253.4 309 50.8
GSVIVG01011678001 Vitis vinifera HOM05D006041 ORTHO05D007473 6.5e-61 239.2 187 64.7
Oeu063578.1 Olea europaea HOM05D006041 ORTHO05D007473 1.9e-60 237.7 311 46.6
CBR_g3474 Chara braunii HOM05D006041 ORTHO05D007473 3.7e-56 223.4 322 41.0
HPP92_009644 Vanilla planifolia HOM05D006041 ORTHO05D007473 1.2e-54 218.4 244 50.4
Actinidia34032 Actinidia chinensis HOM05D006041 ORTHO05D007473 1.6e-51 208.0 303 44.6
SGA_v2.0_scaffold151G36757 Striga asiatica HOM05D006041 ORTHO05D007473 3.4e-49 200.3 231 46.8
Mapoly0081s0058 Marchantia polymorpha HOM05D006041 ORTHO05D007473 3.1e-47 193.7 284 40.1
Os09g0401600 Oryza sativa ssp. japonica HOM05D006041 ORTHO05D007473 1.1e-44 185.3 226 48.7
Aa31LG3G2990 Aethionema arabicum HOM05D006041 ORTHO05D007473 2.1e-43 181.0 210 52.4
Lalb_Chr16g0387681 Lupinus albus HOM05D006041 ORTHO05D007473 1.0e-34 152.1 315 40.0
SGA_v2.0_scaffold151G36758 Striga asiatica HOM05D006041 ORTHO05D007473 5.2e-34 149.8 236 39.8
arahy.Tifrunner.gnm1.ann1.I8TFGP Arachis hypogaea HOM05D006041 ORTHO05D007473 4.9e-32 143.3 155 47.1
Aa31sc215G20 Aethionema arabicum HOM05D006041 ORTHO05D007473 1.1e-31 142.1 152 55.9
Psat7g181280 Pisum sativum HOM05D006041 ORTHO05D007473 2.2e-24 117.9 141 46.8
CAN.G3.6 Capsicum annuum HOM05D006041 ORTHO05D007473 1.1e-23 115.5 186 40.9
Actinidia25876 Actinidia chinensis HOM05D001822 ORTHO05D001744 3.5e-22 110.5 114 51.8
MCO04G546 Micromonas commoda HOM05D006041 ORTHO05D007473 6.6e-21 106.3 239 32.2
SMO276G0024 Selaginella moellendorffii HOM05D006041 ORTHO05D007473 1.8e-18 98.2 94 53.2
QL10p059701 Quercus lobata HOM05D006041 ORTHO05D007473 7.5e-17 92.8 180 36.7
Actinidia34031 Actinidia chinensis HOM05D006041 ORTHO05D007473 1.9e-12 78.2 81 50.6
Peaxi162Scf00753g00333 Petunia axillaris HOM05D002747 ORTHO05D003069 6.4e-08 63.2 60 45.0
COL.COLO4_15646 Corchorus olitorius HOM05D002747 ORTHO05D003069 8.4e-08 62.8 55 47.3
GSVIVG01003278001 Vitis vinifera HOM05D002747 ORTHO05D003069 1.1e-07 62.4 62 41.9
Zm00001eb175040 Zea mays HOM05D002747 ORTHO05D003069 1.9e-07 61.6 49 53.1
FAN15G0280 Fragaria x ananassa HOM05D002747 ORTHO05D003069 3.2e-07 60.8 116 30.2
Cfa002598 Carpinus fangiana HOM05D002747 ORTHO05D003069 4.1e-07 60.5 102 31.4
MELO3C004086.2 Cucumis melo HOM05D002747 ORTHO05D003069 5.4e-07 60.1 58 44.8
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.6e-06 58.5 128 29.7
Haze_24849 Corylus avellana HOM05D002747 ORTHO05D003069 1.6e-06 58.5 97 29.9
Peaxi162Scf00047g00439 Petunia axillaris HOM05D002747 ORTHO05D003069 2.1e-06 58.2 54 46.3
PGR044G2315 Punica granatum HOM05D002747 ORTHO05D003069 2.1e-06 58.2 52 48.1
RcHm_v2.0_Chr6g0284441 Rosa chinensis HOM05D002747 ORTHO05D003069 2.1e-06 58.2 106 30.2
TWI18G0343 Tripterygium wilfordii HOM05D002747 ORTHO05D003069 2.1e-06 58.2 57 43.9
Aa31sc37G10 Aethionema arabicum HOM05D002747 ORTHO05D003069 2.7e-06 57.8 53 41.5
Ciclev10021209m.g Citrus clementina HOM05D002747 ORTHO05D003069 2.7e-06 57.8 55 43.6
CsaV3_2G007990 Cucumis sativus L. HOM05D002747 ORTHO05D003069 2.7e-06 57.8 58 43.1
FAN07G2519 Fragaria x ananassa HOM05D002747 ORTHO05D003069 2.7e-06 57.8 55 41.8
FAN22G0083 Fragaria x ananassa HOM05D002747 ORTHO05D003069 2.7e-06 57.8 55 41.8
Eucgr.H02771 Eucalyptus grandis HOM05D002747 ORTHO05D003069 3.5e-06 57.4 55 43.6
FvH4_4g13780 Fragaria vesca HOM05D002747 ORTHO05D003069 3.5e-06 57.4 55 41.8
FAN12G1649 Fragaria x ananassa HOM05D002747 ORTHO05D003069 3.5e-06 57.4 55 41.8
CBR_g685 Chara braunii HOM05D002747 ORTHO05D003069 4.6e-06 57.0 86 30.2
FvH4_2g18750 Fragaria vesca HOM05D002747 ORTHO05D003069 4.6e-06 57.0 58 39.7
FAN24G0431 Fragaria x ananassa HOM05D002747 ORTHO05D003069 4.6e-06 57.0 58 39.7
FAN27G3095 Fragaria x ananassa HOM05D002747 ORTHO05D003069 4.6e-06 57.0 58 39.7
ATR0609G128 Amborella trichopoda HOM05D002747 ORTHO05D003069 6.0e-06 56.6 62 38.7
Aqoxy5G00020 Aquilegia oxysepala HOM05D002747 ORTHO05D003069 6.0e-06 56.6 55 40.0
Ca_17966_v3 Cicer arietinum L. HOM05D002747 ORTHO05D003069 6.0e-06 56.6 58 37.9
Ca_17967_v3 Cicer arietinum L. HOM05D002747 ORTHO05D003069 6.0e-06 56.6 58 37.9
ClCG11G012540 Citrullus lanatus HOM05D002747 ORTHO05D003069 6.0e-06 56.6 103 34.0
HPP92_021423 Vanilla planifolia HOM05D002747 ORTHO05D003069 6.0e-06 56.6 55 43.6
Ah.08g214490 Amaranthus hybridus HOM05D002747 ORTHO05D003069 7.8e-06 56.2 52 42.3
EL10Ac7g17875 Beta vulgaris HOM05D002747 ORTHO05D003069 7.8e-06 56.2 70 37.1
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 7.8e-06 56.2 148 27.7
CANSAT78G0345 Cannabis sativa HOM05D002747 ORTHO05D003069 7.8e-06 56.2 55 43.6
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 7.8e-06 56.2 131 29.8
Nn1g07916 Nelumbo nucifera HOM05D002747 ORTHO05D003069 7.8e-06 56.2 55 41.8


User provided reference genes

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