Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G4509 Papaver somniferum HOM05D003942 ORTHO05D004527 8.2e-49 196.8 105 100.0
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 3.8e-14 81.6 61 68.9
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 1.5e-13 79.7 86 57.0
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 2.5e-13 79.0 63 66.7
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 2.5e-13 79.0 104 47.1
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 3.2e-13 78.6 59 69.5
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 4.2e-13 78.2 61 65.6
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 4.2e-13 78.2 61 65.6
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 5.5e-13 77.8 61 70.5
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 5.5e-13 77.8 59 69.5
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 5.5e-13 77.8 59 67.8
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 5.5e-13 77.8 61 70.5
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 7.2e-13 77.4 61 67.2
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 9.5e-13 77.0 61 68.9
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 9.5e-13 77.0 61 65.6
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.2e-12 76.6 59 66.1
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 1.2e-12 76.6 61 68.9
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 1.6e-12 76.3 62 69.4
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 1.6e-12 76.3 61 67.2
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 2.1e-12 75.9 63 61.9
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 2.1e-12 75.9 61 67.2
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.1e-12 75.9 61 67.2
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.1e-12 75.9 61 67.2
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.1e-12 75.9 61 67.2
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.1e-12 75.9 61 67.2
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 2.1e-12 75.9 61 67.2
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 2.1e-12 75.9 60 66.7
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.7e-12 75.5 61 67.2
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 2.7e-12 75.5 62 67.7
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 2.7e-12 75.5 62 67.7
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 2.7e-12 75.5 62 67.7
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 2.7e-12 75.5 59 66.1
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 2.7e-12 75.5 61 65.6
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 2.7e-12 75.5 61 63.9
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 2.7e-12 75.5 62 66.1
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 3.6e-12 75.1 62 64.5
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 3.6e-12 75.1 60 63.3
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 3.6e-12 75.1 60 66.7
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 3.6e-12 75.1 61 63.9
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 4.7e-12 74.7 64 60.9
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 4.7e-12 74.7 64 60.9
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 4.7e-12 74.7 61 65.6
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 4.7e-12 74.7 61 65.6
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 6.1e-12 74.3 64 60.9
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 6.1e-12 74.3 61 63.9
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 6.1e-12 74.3 61 65.6
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 6.1e-12 74.3 60 66.7
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 6.1e-12 74.3 60 66.7
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 6.1e-12 74.3 60 66.7
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 6.1e-12 74.3 63 58.7
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 8.0e-12 73.9 105 45.7
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 8.0e-12 73.9 61 65.6
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 8.0e-12 73.9 61 63.9
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 1.0e-11 73.6 61 65.6
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 1.0e-11 73.6 61 65.6
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 1.4e-11 73.2 61 63.9
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 1.8e-11 72.8 64 59.4
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 1.8e-11 72.8 61 62.3
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 1.8e-11 72.8 62 61.3
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 1.8e-11 72.8 62 61.3
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 1.8e-11 72.8 61 63.9
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 2.3e-11 72.4 61 68.9
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 2.3e-11 72.4 62 66.1
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 2.3e-11 72.4 61 63.9
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 2.3e-11 72.4 61 62.3
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 2.3e-11 72.4 61 62.3
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 2.3e-11 72.4 61 62.3
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 2.3e-11 72.4 61 63.9
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 2.3e-11 72.4 63 61.9
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 3.0e-11 72.0 62 61.3
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 3.0e-11 72.0 63 58.7
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 3.0e-11 72.0 63 58.7
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 4.0e-11 71.6 61 57.4
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 4.0e-11 71.6 61 59.0
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 5.2e-11 71.2 64 57.8
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 5.2e-11 71.2 65 60.0
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 6.8e-11 70.9 63 60.3
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 6.8e-11 70.9 64 59.4
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 6.8e-11 70.9 63 60.3
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 6.8e-11 70.9 62 61.3
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 6.8e-11 70.9 62 59.7
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 6.8e-11 70.9 62 59.7
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 6.8e-11 70.9 62 59.7
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 6.8e-11 70.9 63 61.9
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 8.8e-11 70.5 62 59.7
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 8.8e-11 70.5 63 58.7
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 8.8e-11 70.5 61 62.3
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 8.8e-11 70.5 63 61.9
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 8.8e-11 70.5 61 60.7
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 1.2e-10 70.1 62 59.7
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 1.2e-10 70.1 62 59.7
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 1.2e-10 70.1 62 59.7
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 1.2e-10 70.1 63 58.7
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 1.2e-10 70.1 63 58.7
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 1.2e-10 70.1 63 58.7
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 1.2e-10 70.1 62 59.7
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 1.2e-10 70.1 62 59.7
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 1.2e-10 70.1 61 63.9
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 1.5e-10 69.7 61 59.0
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 2.0e-10 69.3 63 60.3
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 2.0e-10 69.3 63 60.3
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 2.0e-10 69.3 63 60.3
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 2.0e-10 69.3 61 62.3
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 2.0e-10 69.3 61 63.9
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 2.6e-10 68.9 61 65.6
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 3.4e-10 68.6 63 60.3
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 3.4e-10 68.6 45 75.6
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 3.4e-10 68.6 61 57.4
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 4.4e-10 68.2 61 59.0
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 4.4e-10 68.2 61 59.0
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 4.4e-10 68.2 58 58.6
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 5.7e-10 67.8 61 59.0
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 7.5e-10 67.4 63 57.1
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 7.5e-10 67.4 62 64.5
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 9.8e-10 67.0 62 58.1
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 1.3e-09 66.6 61 60.7
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 1.3e-09 66.6 61 62.3
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 1.3e-09 66.6 61 62.3
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 2.2e-09 65.9 63 55.6
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 2.2e-09 65.9 42 76.2
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 2.2e-09 65.9 42 76.2
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 3.7e-09 65.1 62 58.1
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 1.4e-08 63.2 40 80.0
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 1.8e-08 62.8 61 55.7
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.8e-08 62.8 43 69.8
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 2.4e-08 62.4 41 75.6
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 3.1e-08 62.0 61 54.1
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 4.1e-08 61.6 63 55.6
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 5.4e-08 61.2 85 45.9
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.6e-07 59.7 62 53.2
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 2.7e-07 58.9 42 69.0
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 3.5e-07 58.5 40 67.5
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 5.9e-07 57.8 41 65.9
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 1.7e-06 56.2 41 63.4
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 2.3e-06 55.8 39 71.8
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 2.3e-06 55.8 39 71.8


User provided reference genes

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