Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G4413 Papaver somniferum HOM05D003566 ORTHO05D005288 2.3e-165 585.5 295 100.0
PSO832G3659 Papaver somniferum HOM05D003566 ORTHO05D005288 1.0e-112 410.6 528 50.6
PSO782G1824 Papaver somniferum HOM05D003566 ORTHO05D005288 1.9e-111 406.4 528 50.2
Nn1g01139 Nelumbo nucifera HOM05D003566 ORTHO05D005288 1.2e-97 360.5 203 86.2
Hma1.2p1_0301F.1_g118610 Hydrangea macrophylla HOM05D003566 ORTHO05D005288 2.1e-97 359.8 203 86.7
Thecc.01G378400 Theobroma cacao HOM05D003566 ORTHO05D005288 2.1e-97 359.8 203 86.7
CANSAT56G0647 Cannabis sativa HOM05D003566 ORTHO05D005288 3.5e-97 359.0 203 86.2
CANSAT56G3470 Cannabis sativa HOM05D003566 ORTHO05D005288 3.5e-97 359.0 203 86.2
Gorai.001G174400 Gossypium raimondii HOM05D003566 ORTHO05D005288 3.5e-97 359.0 203 85.2
RcHm_v2.0_Chr1g0349971 Rosa chinensis HOM05D003566 ORTHO05D005288 4.6e-97 358.6 203 86.7
Gohir.A07G146300 Gossypium hirsutum HOM05D003566 ORTHO05D005288 6.0e-97 358.2 203 85.7
Rhsim07G0028700 Rhododendron simsii HOM05D003566 ORTHO05D005288 7.8e-97 357.8 204 85.3
Gohir.D07G152400 Gossypium hirsutum HOM05D003566 ORTHO05D005288 1.7e-96 356.7 203 84.7
Rhsim01G0149300 Rhododendron simsii HOM05D003566 ORTHO05D005288 1.7e-96 356.7 203 86.2
TAR374G0275 Trochodendron aralioides HOM05D003566 ORTHO05D005288 2.3e-96 356.3 203 86.2
vmacro21022 Vaccinium macrocarpon HOM05D003566 ORTHO05D005288 2.3e-96 356.3 203 85.7
AUR62004195 Chenopodium quinoa HOM05D003566 ORTHO05D005288 3.0e-96 355.9 203 85.2
Hund17028 Selenicereus undatus HOM05D003566 ORTHO05D005288 3.9e-96 355.5 203 84.7
MBI04_g30227_MAGBIO Magnolia biondii HOM05D003566 ORTHO05D005288 5.1e-96 355.1 254 71.3
Oeu055501.1 Olea europaea HOM05D003566 ORTHO05D005288 5.1e-96 355.1 203 84.7
Sabra14G0047900 Salix brachista HOM05D003566 ORTHO05D005288 5.1e-96 355.1 203 85.2
vmacro13413 Vaccinium macrocarpon HOM05D003566 ORTHO05D005288 6.6e-96 354.8 203 84.7
AUR62013650 Chenopodium quinoa HOM05D003566 ORTHO05D005288 8.6e-96 354.4 203 84.7
Cfa001747 Carpinus fangiana HOM05D003566 ORTHO05D005288 1.1e-95 354.0 203 84.7
FvH4_7g11530 Fragaria vesca HOM05D003566 ORTHO05D005288 1.1e-95 354.0 203 85.7
QL08p052721 Quercus lobata HOM05D003566 ORTHO05D005288 1.1e-95 354.0 202 85.1
GSVIVG01027673001 Vitis vinifera HOM05D003566 ORTHO05D005288 1.1e-95 354.0 203 84.2
Duzib133G0428 Durio zibethinus HOM05D003566 ORTHO05D005288 1.5e-95 353.6 203 84.2
Gohir.A12G101500 Gossypium hirsutum HOM05D003566 ORTHO05D005288 1.9e-95 353.2 204 84.3
Gohir.D12G104500 Gossypium hirsutum HOM05D003566 ORTHO05D005288 1.9e-95 353.2 204 83.8
HanXRQChr16g0520001 Helianthus annuus HOM05D003566 ORTHO05D005288 1.9e-95 353.2 203 85.2
TWI59G0119 Tripterygium wilfordii HOM05D003566 ORTHO05D005288 1.9e-95 353.2 203 85.7
HPP92_020661 Vanilla planifolia HOM05D003566 ORTHO05D005288 1.9e-95 353.2 203 84.2
EL10Ac1g00874 Beta vulgaris HOM05D003566 ORTHO05D005288 2.5e-95 352.8 203 84.2
Cpa.g.sc18.106 Carica papaya HOM05D003566 ORTHO05D005288 2.5e-95 352.8 203 84.2
CiPaw.01G263300 Carya illinoinensis HOM05D003566 ORTHO05D005288 2.5e-95 352.8 203 85.2
CSS0046086 Camellia sinensis var. sinensis HOM05D003566 ORTHO05D005288 3.3e-95 352.4 203 84.7
Manes.05G046900 Manihot esculenta HOM05D003566 ORTHO05D005288 3.3e-95 352.4 254 71.3
Aqoxy7G00661 Aquilegia oxysepala HOM05D003566 ORTHO05D005288 5.6e-95 351.7 203 84.7
ClCG05G002340 Citrullus lanatus HOM05D003566 ORTHO05D005288 5.6e-95 351.7 203 84.7
Gorai.008G113600 Gossypium raimondii HOM05D003566 ORTHO05D005288 5.6e-95 351.7 204 83.8
MD07G1119600 Malus domestica HOM05D003566 ORTHO05D005288 5.6e-95 351.7 203 85.7
MELO3C006199.2 Cucumis melo HOM05D003566 ORTHO05D005288 7.3e-95 351.3 203 84.7
Ah.05g174400 Amaranthus hybridus HOM05D003566 ORTHO05D005288 9.5e-95 350.9 203 84.7
Ciclev10019734m.g Citrus clementina HOM05D003566 ORTHO05D005288 9.5e-95 350.9 203 84.2
Duzib138G1163 Durio zibethinus HOM05D003566 ORTHO05D005288 9.5e-95 350.9 203 84.2
Duzib138G1849 Durio zibethinus HOM05D003566 ORTHO05D005288 9.5e-95 350.9 203 84.2
HanXRQChr04g0122731 Helianthus annuus HOM05D003566 ORTHO05D005288 9.5e-95 350.9 203 84.2
Oeu011923.1 Olea europaea HOM05D003566 ORTHO05D005288 9.5e-95 350.9 203 83.3
VMungo0331G1999 Vigna mungo HOM05D003566 ORTHO05D005288 9.5e-95 350.9 203 84.2
Eucgr.D02465 Eucalyptus grandis HOM05D003566 ORTHO05D005288 1.2e-94 350.5 203 84.2
Lsat_1_v5_gn_7_9680 Lactuca sativa HOM05D003566 ORTHO05D005288 1.2e-94 350.5 203 84.2
Lj3g0026165 Lotus japonicus HOM05D003566 ORTHO05D005288 1.2e-94 350.5 203 83.7
Actinidia12250 Actinidia chinensis HOM05D003566 ORTHO05D005288 1.6e-94 350.1 203 84.7
CsaV3_3G009780 Cucumis sativus L. HOM05D003566 ORTHO05D005288 1.6e-94 350.1 203 84.2
DCAR_008553 Daucus carota HOM05D003566 ORTHO05D005288 1.6e-94 350.1 203 83.7
ECA236G4962 Erigeron canadensis HOM05D003566 ORTHO05D005288 1.6e-94 350.1 203 84.2
MD02G1207300 Malus domestica HOM05D003566 ORTHO05D005288 1.6e-94 350.1 203 85.2
SalBow5G0834 Salvia bowleyana HOM05D003566 ORTHO05D005288 1.6e-94 350.1 203 84.2
FAN03G0287 Fragaria x ananassa HOM05D003566 ORTHO05D005288 2.1e-94 349.7 203 85.2
Lj7C530T15 Lonicera japonica HOM05D003566 ORTHO05D005288 2.1e-94 349.7 203 84.2
Sed0010249 Sechium edule HOM05D003566 ORTHO05D005288 2.1e-94 349.7 203 84.7
Solyc01g091190.3 Solanum lycopersicum HOM05D003566 ORTHO05D005288 2.1e-94 349.7 254 70.5
arahy.Tifrunner.gnm1.ann1.9A4JNA Arachis hypogaea HOM05D003566 ORTHO05D005288 3.6e-94 349.0 203 84.2
Psat0s4330g0080 Pisum sativum HOM05D003566 ORTHO05D005288 3.6e-94 349.0 203 83.7
PGSC0003DMG400026006 Solanum tuberosum HOM05D003566 ORTHO05D005288 3.6e-94 349.0 203 83.7
arahy.Tifrunner.gnm1.ann1.VTP8RR Arachis hypogaea HOM05D003566 ORTHO05D005288 4.7e-94 348.6 203 84.2
Potri.002G146400 Populus trichocarpa HOM05D003566 ORTHO05D005288 4.7e-94 348.6 203 83.3
Sabra02G0114000 Salix brachista HOM05D003566 ORTHO05D005288 4.7e-94 348.6 203 83.3
Sopen01g036940 Solanum pennellii HOM05D003566 ORTHO05D005288 4.7e-94 348.6 254 70.5
Ca_19954_v3 Cicer arietinum L. HOM05D003566 ORTHO05D005288 6.2e-94 348.2 203 83.7
FAN10G2501 Fragaria x ananassa HOM05D003566 ORTHO05D005288 6.2e-94 348.2 203 83.7
Medtr4g024620 Medicago truncatula HOM05D003566 ORTHO05D005288 8.1e-94 347.8 203 83.3
Phvul.010G082200 Phaseolus vulgaris HOM05D003566 ORTHO05D005288 8.1e-94 347.8 203 84.2
Dinv32368 Davidia involucrata HOM05D003566 ORTHO05D005288 1.1e-93 347.4 198 84.8
Lalb_Chr12g0208181 Lupinus albus HOM05D003566 ORTHO05D005288 1.1e-93 347.4 203 82.8
Solyc05g050980.3 Solanum lycopersicum HOM05D003566 ORTHO05D005288 1.1e-93 347.4 203 81.8
Sopen05g029450 Solanum pennellii HOM05D003566 ORTHO05D005288 1.1e-93 347.4 203 81.8
Manes.01G266800 Manihot esculenta HOM05D003566 ORTHO05D005288 1.4e-93 347.1 203 83.3
THA.LOC104817242 Tarenaya hassleriana HOM05D003566 ORTHO05D005288 1.4e-93 347.1 201 84.6
FAN06G2304 Fragaria x ananassa HOM05D003566 ORTHO05D005288 2.3e-93 346.3 203 83.7
FAN06G3189 Fragaria x ananassa HOM05D003566 ORTHO05D005288 2.3e-93 346.3 203 83.7
Lj9A568G56 Lonicera japonica HOM05D003566 ORTHO05D005288 2.3e-93 346.3 203 84.2
Lalb_Chr07g0189911 Lupinus albus HOM05D003566 ORTHO05D005288 2.3e-93 346.3 203 82.8
Peaxi162Scf00013g03114 Petunia axillaris HOM05D003566 ORTHO05D005288 2.3e-93 346.3 203 82.8
QL08p052732 Quercus lobata HOM05D003566 ORTHO05D005288 2.3e-93 346.3 202 83.2
PGSC0003DMG400007018 Solanum tuberosum HOM05D003566 ORTHO05D005288 3.1e-93 345.9 203 81.3
Nitab4.5_0001329g0120 Nicotiana tabacum HOM05D003566 ORTHO05D005288 4.0e-93 345.5 203 82.3
Nitab4.5_0003912g0050 Nicotiana tabacum HOM05D003566 ORTHO05D005288 4.0e-93 345.5 203 81.8
MSTRG.17176 Avicennia marina HOM05D003566 ORTHO05D005288 5.2e-93 345.1 203 83.3
CDE12G0626 Ceratophyllum demersum HOM05D003566 ORTHO05D005288 5.2e-93 345.1 203 81.8
CAN.G388.31 Capsicum annuum HOM05D003566 ORTHO05D005288 6.8e-93 344.7 203 82.3
Prupe.2G143700 Prunus persica HOM05D003566 ORTHO05D005288 6.8e-93 344.7 203 84.7
Zm00001eb378020 Zea mays HOM05D003566 ORTHO05D005288 6.8e-93 344.7 203 81.8
CDE04G0743 Ceratophyllum demersum HOM05D003566 ORTHO05D005288 1.2e-92 344.0 203 81.8
Glyma.01G139600 Glycine max HOM05D003566 ORTHO05D005288 1.2e-92 344.0 203 83.3
Peaxi162Scf00959g00022 Petunia axillaris HOM05D003566 ORTHO05D005288 1.2e-92 344.0 203 80.8
PGR004G2250 Punica granatum HOM05D003566 ORTHO05D005288 1.2e-92 344.0 203 81.3
Dinv43695 Davidia involucrata HOM05D003566 ORTHO05D005288 1.5e-92 343.6 198 84.3
Glyma.03G027400 Glycine max HOM05D003566 ORTHO05D005288 1.5e-92 343.6 203 82.3
Nitab4.5_0000457g0110 Nicotiana tabacum HOM05D003566 ORTHO05D005288 2.6e-92 342.8 203 82.3
ATR0757G160 Amborella trichopoda HOM05D003566 ORTHO05D005288 3.4e-92 342.4 203 81.8
TPR.G31328 Trifolium pratense HOM05D003566 ORTHO05D005288 4.4e-92 342.0 203 83.3
Cc02_g24040 Coffea canephora HOM05D003566 ORTHO05D005288 9.9e-92 340.9 203 81.3
COL.COLO4_12529 Corchorus olitorius HOM05D003566 ORTHO05D005288 9.9e-92 340.9 203 83.3
Carub.0004s2793 Capsella rubella HOM05D003566 ORTHO05D005288 1.3e-91 340.5 203 81.3
AT2G45300 Arabidopsis thaliana HOM05D003566 ORTHO05D005288 1.7e-91 340.1 203 81.3
AL4G44400 Arabidopsis lyrata HOM05D003566 ORTHO05D005288 2.9e-91 339.3 203 81.3
Os06g0133900 Oryza sativa ssp. japonica HOM05D003566 ORTHO05D005288 2.9e-91 339.3 203 80.3
Sp5g02490 Schrenkiella parvula HOM05D003566 ORTHO05D005288 4.9e-91 338.6 203 82.3
AL1G55650 Arabidopsis lyrata HOM05D003566 ORTHO05D005288 6.4e-91 338.2 203 81.3
A03p25160 Brassica napus HOM05D003566 ORTHO05D005288 6.4e-91 338.2 203 82.3
BraA03t11716Z Brassica rapa HOM05D003566 ORTHO05D005288 6.4e-91 338.2 203 82.3
BcaB01g03274 Brassica carinata HOM05D003566 ORTHO05D005288 8.3e-91 337.8 203 81.8
Thhalv10001404m.g Eutrema salsugineum HOM05D003566 ORTHO05D005288 1.1e-90 337.4 203 81.8
TWI14G0817 Tripterygium wilfordii HOM05D003566 ORTHO05D005288 1.1e-90 337.4 231 74.5
C03p30000 Brassica napus HOM05D003566 ORTHO05D005288 1.4e-90 337.0 203 81.8
C04p71450 Brassica napus HOM05D003566 ORTHO05D005288 1.4e-90 337.0 203 81.8
BolC4t28653H Brassica oleracea HOM05D003566 ORTHO05D005288 1.4e-90 337.0 203 81.8
BraA04t18834Z Brassica rapa HOM05D003566 ORTHO05D005288 1.4e-90 337.0 203 81.8
CARHR140500 Cardamine hirsuta HOM05D003566 ORTHO05D005288 1.4e-90 337.0 203 81.3
Sp4g27320 Schrenkiella parvula HOM05D003566 ORTHO05D005288 1.9e-90 336.7 203 81.8
AT1G48860 Arabidopsis thaliana HOM05D003566 ORTHO05D005288 2.4e-90 336.3 203 80.8
unitig_26.g8900 Utricularia gibba HOM05D003566 ORTHO05D005288 2.4e-90 336.3 203 81.3
A04p33720 Brassica napus HOM05D003566 ORTHO05D005288 3.2e-90 335.9 203 81.3
Actinidia12680 Actinidia chinensis HOM05D003566 ORTHO05D005288 4.1e-90 335.5 189 86.8
Aa31LG10G15010 Aethionema arabicum HOM05D003566 ORTHO05D005288 4.1e-90 335.5 203 82.3
Nitab4.5_0005272g0040 Nicotiana tabacum HOM05D003566 ORTHO05D005288 4.1e-90 335.5 215 78.1
Potri.014G068300 Populus trichocarpa HOM05D003566 ORTHO05D005288 7.1e-90 334.7 203 81.3
CARHR171150 Cardamine hirsuta HOM05D003566 ORTHO05D005288 4.6e-89 332.0 203 80.8
MSTRG.4899 Avicennia marina HOM05D003566 ORTHO05D005288 7.8e-89 331.3 203 78.8
FAN01G1013 Fragaria x ananassa HOM05D003566 ORTHO05D005288 3.0e-88 329.3 188 85.6
BolC3t15347H Brassica oleracea HOM05D003566 ORTHO05D005288 5.6e-87 325.1 226 73.9
unitig_76.g29084 Utricularia gibba HOM05D003566 ORTHO05D005288 8.9e-85 317.8 226 72.6
ECA234G2985 Erigeron canadensis HOM05D003566 ORTHO05D005288 1.5e-84 317.0 184 84.8
Lsat_1_v5_gn_4_43461 Lactuca sativa HOM05D003566 ORTHO05D005288 2.2e-83 313.2 180 83.3
BcaC01g05142 Brassica carinata HOM05D003566 ORTHO05D005288 4.2e-82 308.9 203 76.8
SMO137G0336 Selaginella moellendorffii HOM05D003566 ORTHO05D005288 2.3e-80 303.1 198 75.3
GSVIVG01027670001 Vitis vinifera HOM05D003566 ORTHO05D005288 4.3e-79 298.9 182 79.1
SGA_v2.0_scaffold153G36998 Striga asiatica HOM05D003566 ORTHO05D005288 7.3e-79 298.1 178 81.5
SGA_v2.0_scaffold95G28906 Striga asiatica HOM05D003566 ORTHO05D005288 1.4e-77 293.9 186 78.5
AagrBONN_evm.TU.Sc2ySwM_117.2264 Anthoceros agrestis HOM05D003566 ORTHO05D005288 4.0e-77 292.4 254 60.6
Pp3c20_17090 Physcomitrium patens HOM05D003566 ORTHO05D005288 2.2e-75 286.6 206 68.9
Mapoly0034s0104 Marchantia polymorpha HOM05D003566 ORTHO05D005288 1.1e-74 284.3 203 70.4
ECA234G2802 Erigeron canadensis HOM05D003566 ORTHO05D007485 7.1e-74 281.6 164 81.7
Pp3c23_11380 Physcomitrium patens HOM05D003566 ORTHO05D005288 3.0e-72 276.2 206 65.5
A05p05320 Brassica napus HOM05D003566 ORTHO05D003430 2.4e-69 266.5 181 75.1
BraA05t19503Z Brassica rapa HOM05D003566 ORTHO05D005288 2.4e-69 266.5 181 75.1
CBR_g26047 Chara braunii HOM05D003566 ORTHO05D005288 6.9e-69 265.0 198 67.2
Sed0009137 Sechium edule HOM05D003566 ORTHO05D005288 1.3e-67 260.8 153 84.3
Cre03.g181300 Chlamydomonas reinhardtii HOM05D003566 ORTHO05D005288 2.1e-65 253.4 212 62.7
MCO12G366 Micromonas commoda HOM05D003566 ORTHO05D005288 5.1e-64 248.8 206 65.0
Gorai.008G113800 Gossypium raimondii HOM05D003566 ORTHO05D005288 2.9e-59 233.0 195 62.6
unitig_749.g14377 Utricularia gibba HOM05D003566 ORTHO05D023212 4.2e-58 229.2 176 66.5
PRCOL_00003336 Prasinoderma coloniale HOM05D003566 ORTHO05D005288 1.8e-56 223.8 200 60.5
Migut.B01621 Erythranthe guttata HOM05D003566 ORTHO05D005288 5.6e-55 218.8 131 83.2
Gorai.008G113700 Gossypium raimondii HOM05D003566 ORTHO05D005288 2.5e-50 203.4 203 55.2
Sc23g0003670 Simmondsia chinensis HOM05D003566 ORTHO05D005288 1.3e-46 191.0 109 86.2
Gohir.D12G104550 Gossypium hirsutum HOM05D003566 ORTHO05D005288 1.4e-45 187.6 195 54.4
FAN10G1568 Fragaria x ananassa HOM05D003566 ORTHO05D005288 4.2e-42 176.0 109 80.7
Atru.chr5.290 Acer truncatum HOM05D003566 ORTHO05D005288 8.8e-40 168.3 94 86.2
MD10G1038600 Malus domestica HOM05D003566 ORTHO05D023212 1.0e-35 154.8 83 85.5
BcaB02g08943 Brassica carinata HOM05D003566 ORTHO05D023212 2.2e-35 153.7 90 82.2
AUR62038008 Chenopodium quinoa HOM05D003566 ORTHO05D018971 2.1e-25 120.6 184 41.3
Atru.chr5.291 Acer truncatum HOM05D003566 ORTHO05D023212 2.3e-24 117.1 62 87.1
Actinidia31398 Actinidia chinensis HOM05D003566 ORTHO05D005288 4.4e-23 112.8 161 49.7
Cfa024476 Carpinus fangiana HOM05D003566 ORTHO05D126353 8.2e-22 108.6 207 37.2
PSO832G1516 Papaver somniferum HOM05D002084 ORTHO05D002031 2.0e-20 104.0 54 88.9
Psat7g193960 Pisum sativum HOM05D005955 ORTHO05D007633 1.1e-13 81.6 49 79.6
MD02G1207500 Malus domestica HOM05D003566 ORTHO05D023212 1.2e-12 78.2 48 70.8
Psat5g109520 Pisum sativum HOM05D003566 ORTHO05D015842 7.7e-12 75.5 42 88.1
Psat4g211480 Pisum sativum HOM05D001107 ORTHO05D001095 2.2e-11 73.9 42 85.7
Psat0s2974g0040 Pisum sativum HOM05D003566 ORTHO05D329475 2.9e-11 73.6 41 87.8
Psat7g104280 Pisum sativum HOM05D001630 ORTHO05D002505 5.0e-11 72.8 45 80.0
unitig_749.g14378 Utricularia gibba HOM05D003566 ORTHO05D005288 8.5e-11 72.0 39 92.3
Psat1g092560 Pisum sativum HOM05D003566 ORTHO05D329534 4.2e-10 69.7 42 83.3
MBI12_g15742_MAGBIO Magnolia biondii HOM05D003566 ORTHO05D010670 5.5e-10 69.3 45 77.8
arahy.Tifrunner.gnm1.ann1.BBFR3C Arachis hypogaea HOM05D003566 ORTHO05D009053 2.1e-09 67.4 139 34.5
arahy.Tifrunner.gnm1.ann1.V1YSWS Arachis hypogaea HOM05D003566 ORTHO05D015842 2.7e-09 67.0 39 82.1
CAN.G295.1 Capsicum annuum HOM05D003566 ORTHO05D115764 3.6e-09 66.6 76 43.4
MBI11_g47734_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D010670 4.7e-09 66.2 39 82.1
arahy.Tifrunner.gnm1.ann1.EDS2Z7 Arachis hypogaea HOM05D003566 ORTHO05D015842 2.3e-08 63.9 39 79.5
Nn4g26365 Nelumbo nucifera HOM05D034528 ORTHO05D026742 3.0e-08 63.5 115 41.7
Aqoxy5G00451 Aquilegia oxysepala HOM05D003566 ORTHO05D026742 8.8e-08 62.0 83 48.2
GSVIVG01038750001 Vitis vinifera HOM05D003566 ORTHO05D000085 5.7e-07 59.3 42 69.0
EL10Ac5g11366 Beta vulgaris HOM05D003566 ORTHO05D089721 3.7e-06 56.6 78 47.4


User provided reference genes

Program Settings