Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G4377 Papaver somniferum HOM05D001420 ORTHO05D009292 2.8e-100 368.6 190 100.0
PSO017G5378 Papaver somniferum HOM05D001420 ORTHO05D009292 2.1e-95 352.4 195 94.9
MBI11_g44423_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 1.6e-74 283.1 186 77.4
TAR622G0082 Trochodendron aralioides HOM05D001420 ORTHO05D009292 6.6e-73 277.7 169 81.1
Aqoxy3G01555 Aquilegia oxysepala HOM05D001420 ORTHO05D009292 2.0e-69 266.2 170 79.4
GSVIVG01033089001 Vitis vinifera HOM05D001420 ORTHO05D009292 4.9e-68 261.5 173 73.4
Nn3g16459 Nelumbo nucifera HOM05D001420 ORTHO05D009292 1.2e-66 256.9 177 73.4
PGR142G3591 Punica granatum HOM05D001420 ORTHO05D009292 9.6e-64 247.3 178 69.1
Potri.001G329600 Populus trichocarpa HOM05D001420 ORTHO05D009292 4.7e-63 245.0 170 72.4
AUR62017830 Chenopodium quinoa HOM05D001420 ORTHO05D009292 8.1e-63 244.2 171 71.3
Migut.F00060 Erythranthe guttata HOM05D001420 ORTHO05D009292 1.8e-62 243.0 169 69.8
Prupe.3G306700 Prunus persica HOM05D001420 ORTHO05D009292 3.1e-62 242.3 173 71.1
Dinv25658 Davidia involucrata HOM05D001420 ORTHO05D002488 3.4e-61 238.8 169 69.2
Actinidia04437 Actinidia chinensis HOM05D001420 ORTHO05D009292 5.8e-61 238.0 170 70.0
AUR62003518 Chenopodium quinoa HOM05D001420 ORTHO05D009292 5.8e-61 238.0 171 70.2
Haze_14879 Corylus avellana HOM05D001420 ORTHO05D009292 5.8e-61 238.0 180 65.6
Lj1g0001542 Lotus japonicus HOM05D001420 ORTHO05D009292 7.6e-61 237.7 169 69.8
MD09G1010400 Malus domestica HOM05D001420 ORTHO05D009292 9.9e-61 237.3 175 69.1
Sc15g0002740 Simmondsia chinensis HOM05D001420 ORTHO05D009292 1.7e-60 236.5 175 68.0
Duzib147G1300 Durio zibethinus HOM05D001420 ORTHO05D009292 2.2e-60 236.1 170 69.4
CSS0004965 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 2.9e-60 235.7 169 69.8
Hma1.2p1_1278F.1_g272270 Hydrangea macrophylla HOM05D001420 ORTHO05D009292 3.8e-60 235.3 169 69.2
Thecc.04G036700 Theobroma cacao HOM05D001420 ORTHO05D009292 3.8e-60 235.3 170 70.0
HPP92_009721 Vanilla planifolia HOM05D001420 ORTHO05D009292 8.4e-60 234.2 184 66.3
Cc07_g00860 Coffea canephora HOM05D001420 ORTHO05D009292 1.1e-59 233.8 164 68.3
Nitab4.5_0005161g0070 Nicotiana tabacum HOM05D001420 ORTHO05D009292 1.9e-59 233.0 180 63.3
vmacro18348 Vaccinium macrocarpon HOM05D001420 ORTHO05D009292 3.2e-59 232.3 169 67.5
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 9.3e-59 230.7 141 83.0
QL02p071311 Quercus lobata HOM05D001420 ORTHO05D009292 9.3e-59 230.7 170 67.6
Oeu035224.1 Olea europaea HOM05D001420 ORTHO05D009292 1.2e-58 230.3 169 68.6
ATR0561G272 Amborella trichopoda HOM05D001420 ORTHO05D009292 2.1e-58 229.6 171 67.3
TPR.G38286 Trifolium pratense HOM05D001420 ORTHO05D009292 2.1e-58 229.6 170 65.9
Cpa.g.sc171.11 Carica papaya HOM05D001420 ORTHO05D009292 4.6e-58 228.4 170 66.5
CSS0009369 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 6.0e-58 228.0 183 64.5
CDE05G2056 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 6.0e-58 228.0 178 66.3
Eucgr.I01645 Eucalyptus grandis HOM05D001420 ORTHO05D009292 6.0e-58 228.0 172 66.9
SGA_v2.0_scaffold44G16915 Striga asiatica HOM05D001420 ORTHO05D009292 6.0e-58 228.0 169 65.7
Glyma.19G091500 Glycine max HOM05D001420 ORTHO05D009292 1.3e-57 226.9 169 66.9
Manes.15G161200 Manihot esculenta HOM05D001420 ORTHO05D009292 2.3e-57 226.1 175 67.4
Gohir.A09G036000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 3.0e-57 225.7 170 66.5
Glyma.16G056200 Glycine max HOM05D001420 ORTHO05D009292 3.9e-57 225.3 182 61.5
RcHm_v2.0_Chr2g0175601 Rosa chinensis HOM05D001420 ORTHO05D009292 6.6e-57 224.6 165 67.9
THA.LOC104825624 Tarenaya hassleriana HOM05D001420 ORTHO05D009292 8.7e-57 224.2 170 65.9
FvH4_6g53561 Fragaria vesca HOM05D001420 ORTHO05D009292 1.5e-56 223.4 165 67.3
FAN14G1551 Fragaria x ananassa HOM05D001420 ORTHO05D000136 2.5e-56 222.6 164 67.7
Gorai.006G042300 Gossypium raimondii HOM05D001420 ORTHO05D009292 5.6e-56 221.5 170 65.9
Medtr7g029105 Medicago truncatula HOM05D001420 ORTHO05D009292 5.6e-56 221.5 169 65.7
Nitab4.5_0000559g0390 Nicotiana tabacum HOM05D001420 ORTHO05D009292 5.6e-56 221.5 172 63.4
Lalb_Chr22g0360361 Lupinus albus HOM05D001420 ORTHO05D009292 7.3e-56 221.1 166 66.9
CANSAT64G1297 Cannabis sativa HOM05D001420 ORTHO05D009292 9.6e-56 220.7 165 68.5
Psat3g174720 Pisum sativum HOM05D001420 ORTHO05D002488 9.6e-56 220.7 180 61.1
Rhsim08G0042700 Rhododendron simsii HOM05D001420 ORTHO05D009292 9.6e-56 220.7 174 64.4
MSTRG.3074 Avicennia marina HOM05D001420 ORTHO05D009292 1.3e-55 220.3 168 64.3
FAN09G1657 Fragaria x ananassa HOM05D001420 ORTHO05D009292 1.3e-55 220.3 165 66.1
ClCG05G013550 Citrullus lanatus HOM05D001420 ORTHO05D009292 4.8e-55 218.4 168 66.7
Thhalv10004992m.g Eutrema salsugineum HOM05D001420 ORTHO05D009292 8.1e-55 217.6 171 63.2
AL5G16160 Arabidopsis lyrata HOM05D001420 ORTHO05D009292 1.1e-54 217.2 170 63.5
HanXRQChr17g0550091 Helianthus annuus HOM05D001420 ORTHO05D009292 4.0e-54 215.3 166 66.3
BcaB04g19424 Brassica carinata HOM05D001420 ORTHO05D009292 5.3e-54 214.9 170 62.4
BcaC04g23914 Brassica carinata HOM05D001420 ORTHO05D009292 5.3e-54 214.9 170 62.9
FAN05G4256 Fragaria x ananassa HOM05D001420 ORTHO05D009292 9.0e-54 214.2 177 62.1
TWI60G0015 Tripterygium wilfordii HOM05D001420 ORTHO05D009292 9.0e-54 214.2 177 61.0
Sed0020252 Sechium edule HOM05D001420 ORTHO05D009292 1.2e-53 213.8 168 64.3
VMungo1383G3091 Vigna mungo HOM05D001420 ORTHO05D009292 1.2e-53 213.8 166 65.1
arahy.Tifrunner.gnm1.ann1.WDB61R Arachis hypogaea HOM05D001420 ORTHO05D009292 1.5e-53 213.4 171 62.6
Cfa007225 Carpinus fangiana HOM05D001420 ORTHO05D009292 2.0e-53 213.0 153 69.9
AT3G27050 Arabidopsis thaliana HOM05D001420 ORTHO05D009292 3.4e-53 212.2 170 62.9
A09p03260 Brassica napus HOM05D001420 ORTHO05D009292 3.4e-53 212.2 171 63.2
BraA09t35964Z Brassica rapa HOM05D001420 ORTHO05D009292 3.4e-53 212.2 171 63.2
ECA246G1005 Erigeron canadensis HOM05D001420 ORTHO05D002488 4.4e-53 211.8 177 59.9
Sp2g16180 Schrenkiella parvula HOM05D001420 ORTHO05D009292 9.9e-53 210.7 170 62.4
C09p03460 Brassica napus HOM05D001420 ORTHO05D009292 1.3e-52 210.3 171 62.6
BolC9t53267H Brassica oleracea HOM05D001420 ORTHO05D009292 1.3e-52 210.3 171 62.6
Carub.0005s0529 Capsella rubella HOM05D001420 ORTHO05D009292 1.7e-52 209.9 170 61.8
Os11g0488600 Oryza sativa ssp. japonica HOM05D001420 ORTHO05D009292 1.7e-52 209.9 177 61.6
CARHR148270 Cardamine hirsuta HOM05D001420 ORTHO05D009292 2.2e-52 209.5 170 62.9
Atru.chr6.2574 Acer truncatum HOM05D001420 ORTHO05D009292 8.4e-52 207.6 146 71.2
CsaV3_3G026980 Cucumis sativus L. HOM05D001420 ORTHO05D009292 8.4e-52 207.6 165 63.6
Lsat_1_v5_gn_0_26060 Lactuca sativa HOM05D001420 ORTHO05D009292 4.2e-51 205.3 162 63.0
Aa31LG2G5540 Aethionema arabicum HOM05D001420 ORTHO05D009292 7.1e-51 204.5 180 60.6
PGSC0003DMG400022915 Solanum tuberosum HOM05D001420 ORTHO05D009292 7.1e-51 204.5 165 59.4
Sabra16G0211000 Salix brachista HOM05D001420 ORTHO05D009292 1.2e-50 203.8 253 48.6
Haze_14955 Corylus avellana HOM05D001420 ORTHO05D009292 1.6e-50 203.4 151 67.5
unitig_60.g25408 Utricularia gibba HOM05D001420 ORTHO05D009292 8.7e-49 197.6 170 57.1
SalBow4G1795 Salvia bowleyana HOM05D001420 ORTHO05D009292 3.3e-48 195.7 170 57.6
Zm00001eb112760 Zea mays HOM05D001420 ORTHO05D009292 7.3e-48 194.5 195 54.9
Gohir.D09G037000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 1.6e-47 193.4 141 70.2
SEGI_21368 Sequoiadendron giganteum HOM05D001420 ORTHO05D009292 1.8e-46 189.9 170 55.9
Dinv33335 Davidia involucrata HOM05D001420 ORTHO05D009292 4.5e-45 185.3 118 74.6
MELO3C014890.2 Cucumis melo HOM05D001420 ORTHO05D009292 3.8e-44 182.2 138 68.1
SalBow4G0299 Salvia bowleyana HOM05D001420 ORTHO05D009292 2.4e-43 179.5 201 48.8
AagrBONN_evm.TU.Sc2ySwM_228.3079 Anthoceros agrestis HOM05D001420 ORTHO05D009292 4.6e-42 175.3 182 50.0
Ciclev10017089m.g Citrus clementina HOM05D001420 ORTHO05D009292 4.6e-42 175.3 131 67.2
Peaxi162Scf00700g00030 Petunia axillaris HOM05D001420 ORTHO05D009292 1.0e-41 174.1 131 61.8
Phvul.001G093200 Phaseolus vulgaris HOM05D001420 ORTHO05D009292 8.7e-41 171.0 169 52.7
RcHm_v2.0_Chr2g0175681 Rosa chinensis HOM05D001420 ORTHO05D009292 2.8e-39 166.0 133 63.9
Pp3c14_4200 Physcomitrium patens HOM05D001420 ORTHO05D009292 1.1e-38 164.1 176 46.6
Pp3c1_27230 Physcomitrium patens HOM05D001420 ORTHO05D009292 1.1e-38 164.1 179 48.6
Ah.03g147520 Amaranthus hybridus HOM05D001420 ORTHO05D009292 1.2e-37 160.6 159 57.2
Lj7C610G7 Lonicera japonica HOM05D001420 ORTHO05D009292 1.9e-35 153.3 111 67.6
MD16G1254400 Malus domestica HOM05D001420 ORTHO05D009292 3.5e-34 149.1 119 64.7
SMO119G0238 Selaginella moellendorffii HOM05D001420 ORTHO05D009292 2.3e-33 146.4 140 55.0
CDE05G0537 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 9.0e-30 134.4 118 58.5
CBR_g762 Chara braunii HOM05D001420 ORTHO05D009292 5.9e-29 131.7 169 41.4
CiPaw.03G055800 Carya illinoinensis HOM05D001420 ORTHO05D002488 1.8e-17 93.6 69 66.7
DCAR_021795 Daucus carota HOM05D001420 ORTHO05D009292 6.3e-15 85.1 80 53.8
Hund12739 Selenicereus undatus HOM05D001420 ORTHO05D009292 6.5e-12 75.1 49 75.5
Cre01.g049050 Chlamydomonas reinhardtii HOM05D001420 ORTHO05D009292 1.4e-11 73.9 148 29.1
Nitab4.5_0000525g0030 Nicotiana tabacum HOM05D001420 ORTHO05D009292 1.2e-10 70.9 42 73.8
FAN02G0503 Fragaria x ananassa HOM05D001420 ORTHO05D009292 1.6e-10 70.5 61 60.7


User provided reference genes

Program Settings