Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 3.4e-207 725.3 532 100.0
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 1.5e-194 683.3 532 92.1
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.0e-123 448.0 552 66.5
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 5.1e-123 445.7 549 63.9
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.2e-119 434.5 551 68.4
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 5.9e-119 432.2 552 62.9
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 7.7e-119 431.8 552 64.7
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 7.7e-119 431.8 553 68.7
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 3.8e-118 429.5 553 68.5
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 1.4e-117 427.6 557 66.1
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 3.2e-117 426.4 552 59.4
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 5.5e-117 425.6 554 69.7
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 8.8e-115 418.3 553 62.2
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 7.4e-114 415.2 550 63.8
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 9.7e-114 414.8 557 63.2
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 2.2e-113 413.7 550 69.8
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 5.3e-112 409.1 549 58.5
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 5.3e-112 409.1 547 66.7
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 1.2e-111 407.9 551 59.0
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 1.2e-111 407.9 554 61.6
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 1.5e-111 407.5 553 59.1
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 2.6e-111 406.8 547 60.9
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 3.4e-111 406.4 551 61.0
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 2.2e-110 403.7 553 61.8
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 7.2e-109 398.7 558 59.7
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.6e-108 397.5 544 64.2
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 2.1e-108 397.1 548 60.9
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 1.4e-107 394.4 552 66.3
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 1.4e-107 394.4 574 63.1
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 2.3e-107 393.7 548 61.1
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 3.9e-107 392.9 551 59.2
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 3.9e-107 392.9 573 56.5
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 3.3e-106 389.8 548 61.7
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 7.4e-106 388.7 591 57.5
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 1.3e-105 387.9 548 65.3
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 1.7e-105 387.5 555 61.6
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 1.7e-105 387.5 548 62.0
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 1.4e-104 384.4 551 62.4
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 1.8e-104 384.0 551 61.0
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 2.4e-104 383.6 564 56.9
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 2.4e-104 383.6 550 62.7
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 7.0e-104 382.1 550 58.4
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 1.6e-103 380.9 547 63.4
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 2.6e-103 380.2 557 60.0
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 2.6e-103 380.2 549 65.2
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 1.0e-102 378.3 543 63.0
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 1.7e-102 377.5 545 60.0
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 3.8e-102 376.3 541 58.0
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 6.5e-102 375.6 562 58.2
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 8.5e-102 375.2 555 59.3
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 1.1e-101 374.8 558 60.9
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 1.9e-101 374.0 560 58.8
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 3.2e-101 373.2 544 56.8
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 7.2e-101 372.1 553 57.7
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 1.2e-100 371.3 554 59.0
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 4.0e-99 366.3 555 63.6
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 8.8e-99 365.2 549 61.4
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 8.8e-99 365.2 547 64.9
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 1.5e-98 364.4 544 61.9
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 2.0e-98 364.0 544 61.4
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 3.3e-98 363.2 554 63.0
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 4.4e-98 362.8 544 61.4
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 1.3e-97 361.3 562 58.2
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 1.7e-97 360.9 554 58.3
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 2.2e-97 360.5 549 65.6
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 1.1e-96 358.2 548 62.4
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 4.1e-96 356.3 547 58.9
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 4.1e-96 356.3 550 64.0
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 1.2e-95 354.8 561 49.7
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 2.0e-95 354.0 553 60.6
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 3.5e-95 353.2 547 60.5
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 3.5e-95 353.2 544 60.8
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 6.5e-94 349.0 552 62.7
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 1.1e-93 348.2 563 60.9
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 1.9e-93 347.4 547 58.9
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 3.2e-93 346.7 556 57.0
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 4.2e-93 346.3 559 60.5
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 9.4e-93 345.1 584 50.5
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 2.7e-92 343.6 550 61.6
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 8.0e-92 342.0 559 58.9
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 6.8e-91 339.0 559 60.6
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.7e-89 334.3 538 59.3
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 1.8e-88 330.9 546 60.4
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 9.1e-88 328.6 548 59.7
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 2.0e-87 327.4 551 62.6
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 2.7e-87 327.0 550 61.5
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 1.7e-86 324.3 547 58.7
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 5.0e-86 322.8 538 60.6
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 5.5e-85 319.3 560 56.4
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 1.6e-84 317.8 536 60.8
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.6e-84 317.8 545 57.4
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 2.7e-84 317.0 599 49.6
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 7.5e-82 308.9 557 52.8
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 1.4e-80 304.7 559 52.6
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 7.3e-77 292.4 485 58.4
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 1.8e-75 287.7 552 53.6
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 2.3e-75 287.3 546 49.6
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 3.0e-75 287.0 394 65.2
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 5.7e-74 282.7 554 50.7
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 1.3e-73 281.6 553 54.2
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 1.7e-73 281.2 553 54.4
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 3.7e-73 280.0 232 80.6
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 8.3e-73 278.9 544 52.0
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 1.1e-72 278.5 555 47.0
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 4.1e-72 276.6 542 52.8
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 2.7e-71 273.9 567 53.4
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 5.9e-71 272.7 548 53.3
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 6.6e-70 269.2 563 50.6
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 6.6e-70 269.2 541 53.4
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 1.1e-69 268.5 587 48.6
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 2.5e-69 267.3 473 58.6
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 1.6e-68 264.6 584 46.6
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 3.1e-67 260.4 165 80.6
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.6e-66 257.3 166 81.9
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 5.8e-66 256.1 593 52.3
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 9.8e-66 255.4 170 79.4
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 4.6e-63 246.5 154 84.4
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 1.5e-61 241.5 480 49.6
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 2.6e-58 230.7 485 57.7
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 3.4e-58 230.3 465 52.0
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 1.3e-57 228.4 154 77.3
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 3.0e-54 217.2 164 73.2
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 1.3e-46 191.8 530 36.8
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 5.6e-45 186.4 314 50.0
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 3.5e-39 167.2 434 47.7
Medtr0444s0010 Medicago truncatula HOM05D004889 ORTHO05D005478 1.1e-37 162.2 122 73.0
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 3.5e-31 140.6 213 60.1
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 4.8e-28 130.2 121 66.9
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 1.4e-27 128.6 113 67.3
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 2.4e-27 127.9 272 49.3
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 9.0e-27 125.9 511 44.6
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 1.2e-26 125.6 122 63.1
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 8.4e-25 119.4 72 83.3
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 1.6e-23 115.2 80 65.0
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.7e-23 114.4 105 60.0
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 3.5e-23 114.0 120 60.0
Cre07.g348700 Chlamydomonas reinhardtii HOM05D004889 ORTHO05D005478 1.6e-20 105.1 167 41.9
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 4.8e-20 103.6 111 60.4
Hma1.2p1_0104F.1_g050420 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 3.1e-19 100.9 64 81.2
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 3.8e-17 94.0 107 57.9
arahy.Tifrunner.gnm1.ann1.KJ948Q Arachis hypogaea HOM05D004889 ORTHO05D005478 4.2e-16 90.5 103 55.3
arahy.Tifrunner.gnm1.ann1.GYQ60G Arachis hypogaea HOM05D004889 ORTHO05D005478 4.3e-13 80.5 58 77.6
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 2.8e-12 77.8 82 57.3
Nitab4.5_0003744g0040 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.5e-10 72.0 121 47.9
SEGI_10816 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 1.7e-09 68.6 46 73.9
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 3.8e-09 67.4 77 55.8
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 3.8e-09 67.4 77 55.8
MCO02G371 Micromonas commoda HOM05D004889 ORTHO05D005478 3.6e-07 60.8 156 31.4
Oeu005056.1 Olea europaea HOM05D004889 ORTHO05D005478 4.6e-07 60.5 80 51.2
SEGI_38811 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 3.9e-06 57.4 86 45.3
SEGI_30705 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 5.1e-06 57.0 85 47.1


User provided reference genes

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