Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G3588 Papaver somniferum HOM05D006617 ORTHO05D008247 4.4e-175 617.8 314 100.0
PSO782G1088 Papaver somniferum HOM05D006617 ORTHO05D008247 5.3e-160 567.8 308 93.8
Nn6g33542 Nelumbo nucifera HOM05D006617 ORTHO05D008247 4.4e-90 335.5 281 61.2
QL12p017915 Quercus lobata HOM05D006617 ORTHO05D008247 9.8e-90 334.3 255 66.7
Hma1.2p1_0514F.1_g169800 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 3.7e-89 332.4 233 69.1
Atru.chr6.3216 Acer truncatum HOM05D006617 ORTHO05D008247 8.3e-89 331.3 247 67.6
Dinv38979 Davidia involucrata HOM05D006617 ORTHO05D008247 1.6e-87 327.0 225 68.9
GSVIVG01019803001 Vitis vinifera HOM05D006617 ORTHO05D008247 1.6e-87 327.0 281 62.3
Actinidia14540 Actinidia chinensis HOM05D006617 ORTHO05D008247 5.0e-86 322.0 243 64.6
Lj8A235T58 Lonicera japonica HOM05D006617 ORTHO05D008247 8.6e-86 321.2 324 54.0
HanXRQChr12g0384501 Helianthus annuus HOM05D006617 ORTHO05D008247 1.1e-85 320.9 274 59.5
Potri.014G154900 Populus trichocarpa HOM05D006617 ORTHO05D008247 1.1e-85 320.9 226 68.1
CiPaw.11G138400 Carya illinoinensis HOM05D006617 ORTHO05D008247 1.5e-85 320.5 226 69.5
Manes.12G073000 Manihot esculenta HOM05D006617 ORTHO05D008247 1.9e-85 320.1 226 67.7
Ciclev10016122m.g Citrus clementina HOM05D006617 ORTHO05D008247 2.5e-85 319.7 237 65.4
ECA233G3703 Erigeron canadensis HOM05D006617 ORTHO05D008247 3.3e-85 319.3 243 65.0
Prupe.5G095100 Prunus persica HOM05D006617 ORTHO05D008247 1.2e-84 317.4 235 65.1
CSS0023405 Camellia sinensis var. sinensis HOM05D006617 ORTHO05D008247 4.7e-84 315.5 325 53.5
Cpa.g.sc39.21 Carica papaya HOM05D006617 ORTHO05D008247 6.8e-83 311.6 234 65.0
Sopen12g028920 Solanum pennellii HOM05D006617 ORTHO05D008247 2.0e-82 310.1 233 65.2
Solyc12g056350.2 Solanum lycopersicum HOM05D006617 ORTHO05D008247 2.6e-82 309.7 233 64.8
CsaV3_4G006040 Cucumis sativus L. HOM05D006617 ORTHO05D008247 5.8e-82 308.5 226 65.0
PGSC0003DMG400004251 Solanum tuberosum HOM05D006617 ORTHO05D008247 5.8e-82 308.5 233 64.4
RcHm_v2.0_Chr7g0198641 Rosa chinensis HOM05D006617 ORTHO05D008247 7.5e-82 308.1 237 64.1
TWI36G1290 Tripterygium wilfordii HOM05D006617 ORTHO05D008247 7.5e-82 308.1 226 67.3
FAN04G2914 Fragaria x ananassa HOM05D006617 ORTHO05D008247 1.3e-81 307.4 276 57.6
Lsat_1_v5_gn_6_6941 Lactuca sativa HOM05D006617 ORTHO05D008247 3.7e-81 305.8 228 64.9
CAN.G26.17 Capsicum annuum HOM05D006617 ORTHO05D008247 4.9e-81 305.4 230 64.3
Eucgr.D01883 Eucalyptus grandis HOM05D006617 ORTHO05D008247 8.3e-81 304.7 236 64.0
Duzib251G0852 Durio zibethinus HOM05D006617 ORTHO05D008247 1.1e-80 304.3 226 65.0
MELO3C016345.2 Cucumis melo HOM05D006617 ORTHO05D008247 3.2e-80 302.8 226 64.2
MD06G1077000 Malus domestica HOM05D006617 ORTHO05D008247 3.2e-80 302.8 235 62.1
Medtr8g096960 Medicago truncatula HOM05D006617 ORTHO05D008247 3.2e-80 302.8 239 64.0
COL.COLO4_11251 Corchorus olitorius HOM05D006617 ORTHO05D008247 5.4e-80 302.0 235 63.0
Sed0011813 Sechium edule HOM05D006617 ORTHO05D008247 5.4e-80 302.0 237 60.8
TPR.G12841 Trifolium pratense HOM05D006617 ORTHO05D008247 7.1e-80 301.6 226 65.5
Cc08_g14300 Coffea canephora HOM05D006617 ORTHO05D008247 9.2e-80 301.2 224 63.8
DCAR_008412 Daucus carota HOM05D006617 ORTHO05D008247 9.2e-80 301.2 260 56.9
Lj4g0017727 Lotus japonicus HOM05D006617 ORTHO05D008247 2.1e-79 300.1 246 60.6
Thecc.02G366400 Theobroma cacao HOM05D006617 ORTHO05D008247 2.1e-79 300.1 231 63.6
Psat7g035840 Pisum sativum HOM05D006617 ORTHO05D008247 2.7e-79 299.7 226 65.0
Sc22g0000340 Simmondsia chinensis HOM05D006617 ORTHO05D008247 7.8e-79 298.1 236 63.1
Ah.12g057360 Amaranthus hybridus HOM05D006617 ORTHO05D008247 3.9e-78 295.8 226 64.2
FAN13G2116 Fragaria x ananassa HOM05D006617 ORTHO05D008247 1.1e-77 294.3 243 60.1
Lalb_Chr05g0224971 Lupinus albus HOM05D006617 ORTHO05D008247 1.1e-77 294.3 234 62.4
SalBow6G1063 Salvia bowleyana HOM05D006617 ORTHO05D008247 1.5e-77 293.9 226 61.5
Ca_17553_v3 Cicer arietinum L. HOM05D006617 ORTHO05D008247 4.3e-77 292.4 226 62.8
THA.LOC104800995 Tarenaya hassleriana HOM05D006617 ORTHO05D008247 5.6e-77 292.0 226 63.3
VMungo0251G0775 Vigna mungo HOM05D006617 ORTHO05D008247 2.1e-76 290.0 226 61.1
AL4G27880 Arabidopsis lyrata HOM05D006617 ORTHO05D008247 6.2e-76 288.5 247 57.9
arahy.Tifrunner.gnm1.ann1.164QK4 Arachis hypogaea HOM05D006617 ORTHO05D008247 2.3e-75 286.6 226 61.9
arahy.Tifrunner.gnm1.ann1.90PEWX Arachis hypogaea HOM05D006617 ORTHO05D008247 2.3e-75 286.6 226 61.9
Migut.A00797 Erythranthe guttata HOM05D006617 ORTHO05D008247 2.3e-75 286.6 226 62.8
Gohir.D12G177000 Gossypium hirsutum HOM05D006617 ORTHO05D008247 2.3e-75 286.6 256 55.5
Gorai.008G189400 Gossypium raimondii HOM05D006617 ORTHO05D008247 2.3e-75 286.6 256 55.5
EL10Ac5g12764 Beta vulgaris HOM05D006617 ORTHO05D008247 5.2e-75 285.4 255 58.8
Glyma.05G205300 Glycine max HOM05D006617 ORTHO05D008247 5.2e-75 285.4 235 58.7
TAR375G0379 Trochodendron aralioides HOM05D006617 ORTHO05D008247 8.9e-75 284.6 273 58.2
Sabra14G0117100 Salix brachista HOM05D006617 ORTHO05D008247 1.2e-74 284.3 205 66.3
Carub.0004s1384 Capsella rubella HOM05D006617 ORTHO05D008247 1.5e-74 283.9 246 57.7
Thhalv10017053m.g Eutrema salsugineum HOM05D006617 ORTHO05D008247 2.0e-74 283.5 247 56.7
BcaB01g03976 Brassica carinata HOM05D006617 ORTHO05D008247 2.6e-74 283.1 246 56.9
Phvul.002G287200 Phaseolus vulgaris HOM05D006617 ORTHO05D008247 4.4e-74 282.3 226 59.7
Gohir.A12G174300 Gossypium hirsutum HOM05D006617 ORTHO05D008247 5.8e-74 282.0 256 54.7
Glyma.08G012200 Glycine max HOM05D006617 ORTHO05D008247 9.9e-74 281.2 235 58.3
BraA03t11079Z Brassica rapa HOM05D006617 ORTHO05D008247 1.7e-73 280.4 265 52.5
A03p18190 Brassica napus HOM05D006617 ORTHO05D008247 3.7e-73 279.3 265 52.1
BcaC01g05904 Brassica carinata HOM05D006617 ORTHO05D008247 6.4e-73 278.5 247 56.3
C03p21220 Brassica napus HOM05D006617 ORTHO05D008247 2.4e-72 276.6 247 55.9
BolC3t14504H Brassica oleracea HOM05D006617 ORTHO05D008247 2.4e-72 276.6 247 55.9
FAN18G0570 Fragaria x ananassa HOM05D006617 ORTHO05D008247 1.2e-71 274.2 247 57.9
Sp4g14850 Schrenkiella parvula HOM05D006617 ORTHO05D008247 1.6e-71 273.9 246 54.9
FvH4_5g01880 Fragaria vesca HOM05D006617 ORTHO05D008247 1.3e-70 270.8 247 57.5
Aa31LG5G4800 Aethionema arabicum HOM05D006617 ORTHO05D008247 6.6e-70 268.5 248 55.6
FAN08G3651 Fragaria x ananassa HOM05D006617 ORTHO05D008247 1.5e-69 267.3 247 56.7
AUR62017243 Chenopodium quinoa HOM05D006617 ORTHO05D008247 4.3e-69 265.8 216 61.6
Hund11496 Selenicereus undatus HOM05D006617 ORTHO05D008247 5.6e-69 265.4 210 60.5
ATR0680G238 Amborella trichopoda HOM05D006617 ORTHO05D008247 1.2e-68 264.2 237 54.0
Peaxi162Scf01294g00327 Petunia axillaris HOM05D006617 ORTHO05D008247 3.6e-68 262.7 225 59.1
HPP92_004974 Vanilla planifolia HOM05D006617 ORTHO05D008247 4.7e-68 262.3 228 57.0
AUR62010601 Chenopodium quinoa HOM05D000030 ORTHO05D008247 6.8e-67 258.5 196 65.3
Os03g0110900 Oryza sativa ssp. japonica HOM05D006617 ORTHO05D008247 3.4e-66 256.1 288 46.9
MBI18_g01147_MAGBIO Magnolia biondii HOM05D006617 ORTHO05D008247 2.9e-65 253.1 190 65.8
Haze_08904 Corylus avellana HOM05D006617 ORTHO05D008247 3.8e-65 252.7 219 61.6
Zm00001eb404120 Zea mays HOM05D006617 ORTHO05D008247 2.4e-64 250.0 237 51.5
Haze_08908 Corylus avellana HOM05D006617 ORTHO05D008247 3.2e-64 249.6 219 61.2
PGR031G1807 Punica granatum HOM05D006617 ORTHO05D008247 4.2e-64 249.2 200 63.0
SEGI_22684 Sequoiadendron giganteum HOM05D006617 ORTHO05D008247 3.5e-63 246.1 221 53.8
ClCG07G007980 Citrullus lanatus HOM05D006617 ORTHO05D008247 1.5e-61 240.7 186 61.8
Oeu025101.1 Olea europaea HOM05D006617 ORTHO05D008247 2.1e-55 220.3 165 64.8
SGA_v2.0_scaffold146G36248 Striga asiatica HOM05D006617 ORTHO05D008247 7.4e-53 211.8 166 60.2
Actinidia02025 Actinidia chinensis HOM05D006617 ORTHO05D008247 1.1e-51 208.0 182 59.3
Nitab4.5_0000360g0080 Nicotiana tabacum HOM05D006617 ORTHO05D008247 2.2e-49 200.3 181 56.4
AT2G32500 Arabidopsis thaliana HOM05D006617 ORTHO05D008247 2.9e-49 199.9 184 57.1
Nitab4.5_0010198g0030 Nicotiana tabacum HOM05D006617 ORTHO05D008247 2.9e-49 199.9 272 45.2
Aqoxy7G00382 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 2.5e-45 186.8 134 68.7
Hma1.2p1_3255F.1_g334560 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 6.2e-44 182.2 252 46.4
SMO329G0076 Selaginella moellendorffii HOM05D006617 ORTHO05D008247 6.9e-43 178.7 222 38.7
AagrBONN_evm.TU.Sc2ySwM_228.4793 Anthoceros agrestis HOM05D006617 ORTHO05D008247 2.0e-42 177.2 222 40.5
Pp3c20_8200 Physcomitrium patens HOM05D006617 ORTHO05D008247 1.1e-40 171.4 220 41.4
Nitab4.5_0029474g0010 Nicotiana tabacum HOM05D006617 ORTHO05D008247 1.6e-39 167.5 161 55.3
CARHR126330 Cardamine hirsuta HOM05D006617 ORTHO05D008247 1.6e-36 157.5 134 54.5
Aqoxy7G00383 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 2.7e-31 140.2 189 47.1
MSTRG.12003 Avicennia marina HOM05D006617 ORTHO05D008247 6.7e-30 135.6 123 54.5
AUR62042944 Chenopodium quinoa HOM05D006617 ORTHO05D008247 2.4e-27 127.1 126 53.2
Mapoly0086s0005 Marchantia polymorpha HOM05D006617 ORTHO05D008247 2.0e-26 124.0 217 31.8
Pp3c7_1410 Physcomitrium patens HOM05D006617 ORTHO05D008247 2.0e-26 124.0 214 33.6
Mapoly0086s0010 Marchantia polymorpha HOM05D006617 ORTHO05D008247 1.9e-24 117.5 230 30.9
Lsat_1_v5_gn_8_1081 Lactuca sativa HOM05D006617 ORTHO05D008247 3.6e-23 113.2 113 55.8
Glyma.05G087800 Glycine max HOM05D006617 ORTHO05D008247 4.5e-18 96.3 74 59.5
PRCOL_00003136 Prasinoderma coloniale HOM05D006617 ORTHO05D008247 5.0e-17 92.8 204 28.9
Pp3c8_19270 Physcomitrium patens HOM05D006617 ORTHO05D008247 8.5e-17 92.0 244 26.6
CBR_g57728 Chara braunii HOM05D006617 ORTHO05D008247 1.1e-13 81.6 115 37.4
Aa31sc893G10 Aethionema arabicum HOM05D003252 ORTHO05D003640 6.3e-12 75.9 218 26.1
CDE06G1437 Ceratophyllum demersum HOM05D006617 ORTHO05D008247 9.1e-11 72.0 63 60.3
MELO3C004648.2 Cucumis melo HOM05D003252 ORTHO05D003640 1.2e-10 71.6 220 22.7
Aa31sc437G20 Aethionema arabicum HOM05D003252 ORTHO05D003640 5.9e-10 69.3 219 25.1
ClCG11G001480 Citrullus lanatus HOM05D003252 ORTHO05D003640 7.7e-10 68.9 220 23.2
Gorai.009G034900 Gossypium raimondii HOM05D003252 ORTHO05D003640 1.7e-09 67.8 217 25.8
MD14G1098400 Malus domestica HOM05D006617 ORTHO05D008247 2.2e-09 67.4 68 54.4
Gohir.A07G014600 Gossypium hirsutum HOM05D003252 ORTHO05D003640 2.9e-09 67.0 216 24.1
CsaV3_2G001200 Cucumis sativus L. HOM05D003252 ORTHO05D003640 8.5e-09 65.5 221 22.2
Gohir.A05G033001 Gossypium hirsutum HOM05D003252 ORTHO05D003640 8.5e-09 65.5 218 25.7
ATR0377G002 Amborella trichopoda HOM05D003252 ORTHO05D003640 1.9e-08 64.3 217 25.3
Sp3g21430 Schrenkiella parvula HOM05D003252 ORTHO05D003640 1.9e-08 64.3 246 24.8
Ciclev10012522m.g Citrus clementina HOM05D003252 ORTHO05D003640 5.5e-08 62.8 216 22.2
Gohir.D05G034500 Gossypium hirsutum HOM05D003252 ORTHO05D003640 7.2e-08 62.4 218 25.2
AT2G31670 Arabidopsis thaliana HOM05D003252 ORTHO05D003640 9.4e-08 62.0 217 22.6
Thhalv10002638m.g Eutrema salsugineum HOM05D003252 ORTHO05D003640 9.4e-08 62.0 220 25.5
Phvul.003G132200 Phaseolus vulgaris HOM05D003252 ORTHO05D003640 9.4e-08 62.0 220 23.6
Gorai.001G015100 Gossypium raimondii HOM05D003252 ORTHO05D003640 2.1e-07 60.8 216 22.7
Cfa003021 Carpinus fangiana HOM05D003252 ORTHO05D003640 2.7e-07 60.5 240 23.8
CiPaw.03G208300 Carya illinoinensis HOM05D003252 ORTHO05D003640 2.7e-07 60.5 219 25.6
CiPaw.04G145000 Carya illinoinensis HOM05D003252 ORTHO05D003640 2.7e-07 60.5 219 23.3
MSTRG.10521 Avicennia marina HOM05D003252 ORTHO05D003640 3.6e-07 60.1 244 24.2
Haze_25978 Corylus avellana HOM05D003252 ORTHO05D003640 4.7e-07 59.7 240 23.8
QL02p060735 Quercus lobata HOM05D003252 ORTHO05D003640 6.1e-07 59.3 219 21.5
Eucgr.C03557 Eucalyptus grandis HOM05D003252 ORTHO05D003640 1.0e-06 58.5 215 22.8
Carub.0004s1297 Capsella rubella HOM05D003252 ORTHO05D003640 1.4e-06 58.2 242 23.6
AL4G26910 Arabidopsis lyrata HOM05D003252 ORTHO05D003640 1.8e-06 57.8 218 24.3
QL02p060441 Quercus lobata HOM05D003252 ORTHO05D003640 1.8e-06 57.8 219 21.5
BolC1t03946H Brassica oleracea HOM05D003252 ORTHO05D003640 2.3e-06 57.4 251 24.7
Gohir.D07G014300 Gossypium hirsutum HOM05D003252 ORTHO05D003640 2.3e-06 57.4 205 23.9
C01p39910 Brassica napus HOM05D003252 ORTHO05D003640 3.0e-06 57.0 218 25.7
BraA01t03256Z Brassica rapa HOM05D003252 ORTHO05D003640 3.0e-06 57.0 218 23.9
A01p31300 Brassica napus HOM05D003252 ORTHO05D003640 4.0e-06 56.6 218 23.9
Cpa.g.sc28.70 Carica papaya HOM05D003252 ORTHO05D003640 4.0e-06 56.6 220 21.8
Atru.chr7.1676 Acer truncatum HOM05D003252 ORTHO05D003640 8.8e-06 55.5 239 21.8
Ah.09g231370 Amaranthus hybridus HOM05D003252 ORTHO05D003640 8.8e-06 55.5 229 23.1


User provided reference genes

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