Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G3347 Papaver somniferum HOM05D006853 ORTHO05D008906 9.3e-53 209.9 104 100.0
PSO541G5551 Papaver somniferum HOM05D006853 ORTHO05D008906 1.1e-21 106.7 56 92.9
PSO675G5986 Papaver somniferum HOM05D006853 ORTHO05D008906 5.5e-21 104.4 56 92.9
Potri.010G134600 Populus trichocarpa HOM05D006853 ORTHO05D008906 4.2e-13 78.2 54 66.7
Potri.008G110700 Populus trichocarpa HOM05D006853 ORTHO05D008906 1.6e-12 76.3 45 71.1
Actinidia30174 Actinidia chinensis HOM05D006853 ORTHO05D008906 2.7e-12 75.5 53 67.9
Oeu024136.2 Olea europaea HOM05D006853 ORTHO05D008906 2.7e-12 75.5 48 66.7
Sabra10G0103400 Salix brachista HOM05D006853 ORTHO05D008906 3.6e-12 75.1 54 64.8
MSTRG.7709 Avicennia marina HOM05D006853 ORTHO05D008906 4.6e-12 74.7 53 64.2
Oeu054573.1 Olea europaea HOM05D006853 ORTHO05D008906 6.1e-12 74.3 48 66.7
Oeu054575.1 Olea europaea HOM05D006853 ORTHO05D008906 6.1e-12 74.3 48 66.7
Oeu054577.1 Olea europaea HOM05D006853 ORTHO05D008906 6.1e-12 74.3 48 66.7
Thecc.02G317700 Theobroma cacao HOM05D006853 ORTHO05D008906 7.9e-12 73.9 54 61.1
CSS0003455 Camellia sinensis var. sinensis HOM05D006853 ORTHO05D008906 1.0e-11 73.6 49 65.3
ClCG01G007410 Citrullus lanatus HOM05D006853 ORTHO05D008906 1.0e-11 73.6 56 57.1
Manes.06G077700 Manihot esculenta HOM05D006853 ORTHO05D008906 1.0e-11 73.6 54 59.3
Dinv16569 Davidia involucrata HOM05D000044 ORTHO05D006634 1.4e-11 73.2 45 68.9
Peaxi162Scf00188g00063 Petunia axillaris HOM05D006853 ORTHO05D008906 1.4e-11 73.2 63 57.1
Rhsim09G0117300 Rhododendron simsii HOM05D006853 ORTHO05D008906 1.4e-11 73.2 48 64.6
PGSC0003DMG400025119 Solanum tuberosum HOM05D006853 ORTHO05D008906 1.4e-11 73.2 70 52.9
HanXRQChr12g0364531 Helianthus annuus HOM05D006853 ORTHO05D008906 1.8e-11 72.8 57 59.6
Aqoxy5G01341 Aquilegia oxysepala HOM05D006853 ORTHO05D008906 2.3e-11 72.4 64 57.8
Haze_23238 Corylus avellana HOM05D006853 ORTHO05D008906 2.3e-11 72.4 48 64.6
Duzib268G1722 Durio zibethinus HOM05D006853 ORTHO05D008906 2.3e-11 72.4 54 59.3
SalBow8G0220 Salvia bowleyana HOM05D006853 ORTHO05D008906 2.3e-11 72.4 52 65.4
SalBow8G1387 Salvia bowleyana HOM05D006853 ORTHO05D008906 2.3e-11 72.4 52 65.4
Cpa.g.sc53.10 Carica papaya HOM05D006853 ORTHO05D008906 3.0e-11 72.0 58 58.6
Cfa009867 Carpinus fangiana HOM05D006853 ORTHO05D008906 3.0e-11 72.0 48 62.5
Migut.L01132 Erythranthe guttata HOM05D006853 ORTHO05D006634 3.0e-11 72.0 53 62.3
Medtr5g049260 Medicago truncatula HOM05D006853 ORTHO05D008906 3.0e-11 72.0 47 66.0
Medtr5g049270 Medicago truncatula HOM05D006853 ORTHO05D008906 3.0e-11 72.0 47 66.0
CSS0047872 Camellia sinensis var. sinensis HOM05D006853 ORTHO05D008906 3.9e-11 71.6 53 60.4
Gohir.A03G107900 Gossypium hirsutum HOM05D006853 ORTHO05D008906 3.9e-11 71.6 54 59.3
COL.COLO4_27747 Corchorus olitorius HOM05D006853 ORTHO05D008906 5.1e-11 71.2 45 66.7
CsaV3_5G018880 Cucumis sativus L. HOM05D006853 ORTHO05D008906 5.1e-11 71.2 56 55.4
Solyc05g010290.3 Solanum lycopersicum HOM05D006853 ORTHO05D008906 5.1e-11 71.2 53 64.2
Atru.chr11.1459 Acer truncatum HOM05D006853 ORTHO05D008906 6.7e-11 70.9 63 52.4
Atru.chr11.1493 Acer truncatum HOM05D006853 ORTHO05D008906 6.7e-11 70.9 63 52.4
Nitab4.5_0010998g0020 Nicotiana tabacum HOM05D006853 ORTHO05D008906 6.7e-11 70.9 48 64.6
Sopen05g006060 Solanum pennellii HOM05D006853 ORTHO05D008906 6.7e-11 70.9 53 64.2
CAN.G184.17 Capsicum annuum HOM05D006853 ORTHO05D008906 8.8e-11 70.5 61 59.0
Gohir.D02G132900 Gossypium hirsutum HOM05D006853 ORTHO05D008906 8.8e-11 70.5 54 59.3
CANSAT64G2393 Cannabis sativa HOM05D006853 ORTHO05D008906 1.1e-10 70.1 53 60.4
Cc11_g11200 Coffea canephora HOM05D006853 ORTHO05D008906 1.1e-10 70.1 57 47.4
QL03p047845 Quercus lobata HOM05D006853 ORTHO05D008906 1.5e-10 69.7 59 52.5
MELO3C005171.2 Cucumis melo HOM05D006853 ORTHO05D008906 2.0e-10 69.3 48 60.4
Nitab4.5_0000027g0460 Nicotiana tabacum HOM05D006853 ORTHO05D008906 2.0e-10 69.3 53 62.3
VMungo1215G2951 Vigna mungo HOM05D006853 ORTHO05D008906 2.0e-10 69.3 61 50.8
CiPaw.06G096100 Carya illinoinensis HOM05D006853 ORTHO05D008906 2.5e-10 68.9 51 56.9
Hma1.2p1_0762F.1_g214380 Hydrangea macrophylla HOM05D006853 ORTHO05D008906 3.3e-10 68.6 45 64.4
Lj6P771T55 Lonicera japonica HOM05D006853 ORTHO05D008906 3.3e-10 68.6 42 71.4
Lalb_Chr17g0341651 Lupinus albus HOM05D006853 ORTHO05D008906 3.3e-10 68.6 56 57.1
Sed0015072 Sechium edule HOM05D006853 ORTHO05D008906 3.3e-10 68.6 48 58.3
TWI31G0390 Tripterygium wilfordii HOM05D006853 ORTHO05D008906 3.3e-10 68.6 46 65.2
TAR624G1108 Trochodendron aralioides HOM05D006853 ORTHO05D008906 3.3e-10 68.6 52 61.5
Ciclev10032464m.g Citrus clementina HOM05D006853 ORTHO05D008906 5.7e-10 67.8 54 53.7
Actinidia31918 Actinidia chinensis HOM05D006853 ORTHO05D006634 7.4e-10 67.4 54 59.3
Ah.02g127470 Amaranthus hybridus HOM05D001046 ORTHO05D002934 7.4e-10 67.4 45 62.2
MD13G1053100 Malus domestica HOM05D006853 ORTHO05D008906 7.4e-10 67.4 46 67.4
Phvul.002G082000 Phaseolus vulgaris HOM05D006853 ORTHO05D008906 7.4e-10 67.4 60 50.0
GSVIVG01010168001 Vitis vinifera HOM05D000044 ORTHO05D006634 7.4e-10 67.4 62 46.8
Hma1.2p1_0125F.1_g058490 Hydrangea macrophylla HOM05D006853 ORTHO05D008906 9.7e-10 67.0 40 70.0
AT3G25545 Arabidopsis thaliana HOM05D006853 ORTHO05D008906 1.3e-09 66.6 53 56.6
Hund25134 Selenicereus undatus HOM05D006853 ORTHO05D008906 1.3e-09 66.6 45 60.0
AUR62007823 Chenopodium quinoa HOM05D006853 ORTHO05D008906 1.7e-09 66.2 45 60.0
Lsat_1_v5_gn_8_37640 Lactuca sativa HOM05D006853 ORTHO05D008906 1.7e-09 66.2 53 60.4
Sc11g0002760 Simmondsia chinensis HOM05D006853 ORTHO05D008906 1.7e-09 66.2 45 66.7
Lj2g0007836 Lotus japonicus HOM05D000044 ORTHO05D006634 2.2e-09 65.9 62 46.8
PGR102G0342 Punica granatum HOM05D006853 ORTHO05D008906 2.2e-09 65.9 57 50.9
Aa31LG2G6790 Aethionema arabicum HOM05D006853 ORTHO05D008906 2.8e-09 65.5 46 63.0
Ca_05156_v3 Cicer arietinum L. HOM05D006853 ORTHO05D008906 2.8e-09 65.5 72 45.8
ECA233G2927 Erigeron canadensis HOM05D006853 ORTHO05D006634 2.8e-09 65.5 48 60.4
Glyma.02G127200 Glycine max HOM05D006853 ORTHO05D008906 2.8e-09 65.5 62 48.4
Prupe.1G299000 Prunus persica HOM05D006853 ORTHO05D006634 2.8e-09 65.5 44 68.2
Sp2g14810 Schrenkiella parvula HOM05D006853 ORTHO05D008906 2.8e-09 65.5 53 60.4
Glyma.01G070150 Glycine max HOM05D006853 ORTHO05D008906 3.7e-09 65.1 64 48.4
arahy.Tifrunner.gnm1.ann1.QR8D6Y Arachis hypogaea HOM05D006853 ORTHO05D008906 4.8e-09 64.7 47 55.3
Eucgr.B03092 Eucalyptus grandis HOM05D006853 ORTHO05D008906 4.8e-09 64.7 53 52.8
THA.LOC104801842 Tarenaya hassleriana HOM05D006853 ORTHO05D008906 4.8e-09 64.7 48 62.5
Nn7g37287 Nelumbo nucifera HOM05D006853 ORTHO05D008906 6.3e-09 64.3 57 52.6
Psat1g127240 Pisum sativum HOM05D002500 ORTHO05D002587 6.3e-09 64.3 52 53.8
Psat2g098640 Pisum sativum HOM05D006853 ORTHO05D008906 6.3e-09 64.3 52 53.8
AL5G14010 Arabidopsis lyrata HOM05D006853 ORTHO05D008906 8.2e-09 63.9 53 56.6
BcaB07g30639 Brassica carinata HOM05D006853 ORTHO05D008906 8.2e-09 63.9 41 68.3
Carub.0005s0328 Capsella rubella HOM05D006853 ORTHO05D008906 8.2e-09 63.9 53 56.6
HanXRQChr08g0214781 Helianthus annuus HOM05D006853 ORTHO05D008906 8.2e-09 63.9 48 58.3
arahy.Tifrunner.gnm1.ann1.N8UYM2 Arachis hypogaea HOM05D006853 ORTHO05D008906 1.1e-08 63.5 47 55.3
BcaC04g21430 Brassica carinata HOM05D006853 ORTHO05D008906 1.4e-08 63.2 41 68.3
Thhalv10004778m.g Eutrema salsugineum HOM05D006853 ORTHO05D008906 1.4e-08 63.2 53 58.5
MD16G1052100 Malus domestica HOM05D006853 ORTHO05D008906 1.4e-08 63.2 44 65.9
unitig_8.g3212 Utricularia gibba HOM05D006853 ORTHO05D008906 1.8e-08 62.8 50 48.0
HPP92_020023 Vanilla planifolia HOM05D006853 ORTHO05D008906 2.4e-08 62.4 50 54.0
A02p33840 Brassica napus HOM05D006853 ORTHO05D008906 3.1e-08 62.0 52 57.7
C09p31840 Brassica napus HOM05D006853 ORTHO05D008906 3.1e-08 62.0 41 65.9
BcaB07g30269 Brassica carinata HOM05D006853 ORTHO05D008906 4.1e-08 61.6 41 68.3
BcaC03g17267 Brassica carinata HOM05D006853 ORTHO05D008906 4.1e-08 61.6 41 68.3
BcaC03g17268 Brassica carinata HOM05D006853 ORTHO05D008906 4.1e-08 61.6 41 68.3
C02p52120 Brassica napus HOM05D006853 ORTHO05D008906 4.1e-08 61.6 41 68.3
BolC2t11296H Brassica oleracea HOM05D006853 ORTHO05D008906 4.1e-08 61.6 41 68.3
BraA02t08402Z Brassica rapa HOM05D006853 ORTHO05D008906 4.1e-08 61.6 41 68.3
SGA_v2.0_scaffold16G07849 Striga asiatica HOM05D006853 ORTHO05D008906 5.3e-08 61.2 64 50.0
CDE03G0412 Ceratophyllum demersum HOM05D001926 ORTHO05D002121 9.1e-08 60.5 45 53.3
FAN07G1226 Fragaria x ananassa HOM05D006853 ORTHO05D006634 9.1e-08 60.5 53 52.8
FvH4_4g28700 Fragaria vesca HOM05D006853 ORTHO05D008906 1.5e-07 59.7 53 50.9
FAN12G0570 Fragaria x ananassa HOM05D006853 ORTHO05D008906 1.5e-07 59.7 53 50.9
RcHm_v2.0_Chr4g0436821 Rosa chinensis HOM05D006853 ORTHO05D008906 1.5e-07 59.7 38 65.8
CARHR146460 Cardamine hirsuta HOM05D006853 ORTHO05D008906 2.6e-07 58.9 41 63.4
ATR0721G025 Amborella trichopoda HOM05D006853 ORTHO05D008906 5.9e-07 57.8 47 55.3
HanXRQChr15g0469081 Helianthus annuus HOM05D006853 ORTHO05D008906 7.7e-07 57.4 38 63.2
SEGI_13208 Sequoiadendron giganteum HOM05D006853 ORTHO05D008906 5.0e-06 54.7 53 49.1
AagrBONN_evm.TU.Sc2ySwM_368.2648 Anthoceros agrestis HOM05D006853 ORTHO05D008906 8.5e-06 53.9 61 44.3


User provided reference genes

Program Settings