Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G3305 Papaver somniferum HOM05D005341 ORTHO05D006712 2.6e-166 588.6 284 100.0
PSO017G2475 Papaver somniferum HOM05D005341 ORTHO05D006712 1.0e-162 576.6 284 97.9
Nn4g24210 Nelumbo nucifera HOM05D005341 ORTHO05D006712 2.2e-133 479.2 282 78.7
Peaxi162Scf00159g01021 Petunia axillaris HOM05D005341 ORTHO05D006712 3.2e-132 475.3 283 79.9
Lsat_1_v5_gn_4_13500 Lactuca sativa HOM05D005341 ORTHO05D006712 7.2e-132 474.2 283 77.4
Aqoxy3G00085 Aquilegia oxysepala HOM05D005341 ORTHO05D006712 1.8e-130 469.5 312 72.1
CSS0010642 Camellia sinensis var. sinensis HOM05D005341 ORTHO05D006712 5.7e-129 464.5 283 76.7
Dinv14419 Davidia involucrata HOM05D005341 ORTHO05D006712 1.7e-128 463.0 283 77.7
Actinidia36662 Actinidia chinensis HOM05D005341 ORTHO05D006712 3.1e-127 458.8 283 76.0
Sopen05g003820 Solanum pennellii HOM05D005341 ORTHO05D006712 5.3e-127 458.0 281 77.6
HanXRQChr17g0567271 Helianthus annuus HOM05D005341 ORTHO05D006712 7.0e-127 457.6 283 76.3
Solyc05g007970.4 Solanum lycopersicum HOM05D005341 ORTHO05D006712 7.0e-127 457.6 281 77.2
Manes.15G129000 Manihot esculenta HOM05D005341 ORTHO05D006712 2.0e-126 456.1 283 77.0
PGR044G1964 Punica granatum HOM05D005341 ORTHO05D006712 5.9e-126 454.5 282 75.2
PGSC0003DMG400018423 Solanum tuberosum HOM05D005341 ORTHO05D006712 5.9e-126 454.5 281 77.2
DCAR_007306 Daucus carota HOM05D005341 ORTHO05D006712 1.0e-125 453.8 283 76.0
GSVIVG01011739001 Vitis vinifera HOM05D005341 ORTHO05D006712 1.0e-125 453.8 283 76.0
Potri.006G222800 Populus trichocarpa HOM05D005341 ORTHO05D006712 1.7e-125 453.0 282 75.2
AT2G01490 Arabidopsis thaliana HOM05D005341 ORTHO05D006712 2.9e-125 452.2 281 74.4
arahy.Tifrunner.gnm1.ann1.LQU7YY Arachis hypogaea HOM05D005341 ORTHO05D006712 3.8e-125 451.8 283 76.0
Eucgr.B00057 Eucalyptus grandis HOM05D005341 ORTHO05D006712 5.0e-125 451.4 282 75.2
QL01p001313 Quercus lobata HOM05D005341 ORTHO05D006712 5.0e-125 451.4 282 76.2
TAR622G0920 Trochodendron aralioides HOM05D005341 ORTHO05D006712 5.0e-125 451.4 269 79.6
Cc11_g08490 Coffea canephora HOM05D005341 ORTHO05D006712 1.5e-124 449.9 281 76.9
Sed0016642 Sechium edule HOM05D005341 ORTHO05D006712 1.5e-124 449.9 280 74.6
Atru.chr11.477 Acer truncatum HOM05D005341 ORTHO05D006712 1.9e-124 449.5 283 75.6
ATR0564G155 Amborella trichopoda HOM05D005341 ORTHO05D006712 1.9e-124 449.5 282 74.1
TWI31G1197 Tripterygium wilfordii HOM05D005341 ORTHO05D006712 1.9e-124 449.5 282 76.6
CARHR144010 Cardamine hirsuta HOM05D005341 ORTHO05D006712 2.5e-124 449.1 280 74.6
Lalb_Chr16g0385061 Lupinus albus HOM05D005341 ORTHO05D006712 3.2e-124 448.7 283 75.3
CAN.G1298.33 Capsicum annuum HOM05D005341 ORTHO05D006712 4.2e-124 448.4 281 76.2
Prupe.1G326800 Prunus persica HOM05D005341 ORTHO05D006712 4.2e-124 448.4 284 75.7
MSTRG.2162 Avicennia marina HOM05D005341 ORTHO05D006712 5.5e-124 448.0 283 75.3
RcHm_v2.0_Chr4g0441521 Rosa chinensis HOM05D005341 ORTHO05D006712 5.5e-124 448.0 283 76.0
Thecc.02G283300 Theobroma cacao HOM05D005341 ORTHO05D006712 7.2e-124 447.6 283 76.3
Cpa.g.sc65.157 Carica papaya HOM05D005341 ORTHO05D006712 2.1e-123 446.0 282 74.5
BcaC03g17044 Brassica carinata HOM05D005341 ORTHO05D006712 2.7e-123 445.7 280 74.3
C02p49590 Brassica napus HOM05D005341 ORTHO05D006712 2.7e-123 445.7 280 74.3
BolC2t11038H Brassica oleracea HOM05D005341 ORTHO05D006712 2.7e-123 445.7 280 73.6
COL.COLO4_13155 Corchorus olitorius HOM05D005341 ORTHO05D006712 2.7e-123 445.7 283 76.0
CsaV3_5G013260 Cucumis sativus L. HOM05D005341 ORTHO05D006712 2.7e-123 445.7 282 73.4
Hund24969 Selenicereus undatus HOM05D005341 ORTHO05D006712 3.6e-123 445.3 282 73.8
AL5G10480 Arabidopsis lyrata HOM05D005341 ORTHO05D006712 6.1e-123 444.5 282 73.4
Ciclev10016178m.g Citrus clementina HOM05D005341 ORTHO05D006712 8.0e-123 444.1 282 73.8
A02p32060 Brassica napus HOM05D005341 ORTHO05D006712 1.0e-122 443.7 280 73.2
BraA02t08217Z Brassica rapa HOM05D005341 ORTHO05D006712 1.0e-122 443.7 280 73.2
Thhalv10000985m.g Eutrema salsugineum HOM05D005341 ORTHO05D006712 1.4e-122 443.4 281 72.6
TPR.G38361 Trifolium pratense HOM05D005341 ORTHO05D006712 1.4e-122 443.4 279 75.6
Glyma.07G219300 Glycine max HOM05D005341 ORTHO05D006712 1.8e-122 443.0 279 74.6
Sp2g12940 Schrenkiella parvula HOM05D005341 ORTHO05D006712 1.8e-122 443.0 281 72.2
CiPaw.05G196000 Carya illinoinensis HOM05D005341 ORTHO05D006712 2.3e-122 442.6 282 74.5
FvH4_4g32640 Fragaria vesca HOM05D005341 ORTHO05D006712 2.3e-122 442.6 283 74.9
Duzib268G0076 Durio zibethinus HOM05D005341 ORTHO05D006712 3.0e-122 442.2 283 75.3
Glyma.20G017500 Glycine max HOM05D005341 ORTHO05D006712 4.0e-122 441.8 279 74.6
MD16G1026600 Malus domestica HOM05D005341 ORTHO05D006712 4.0e-122 441.8 284 73.6
CDE05G0416 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 5.2e-122 441.4 281 73.0
Ah.02g127780 Amaranthus hybridus HOM05D005341 ORTHO05D006712 6.7e-122 441.0 283 73.9
Carub.0005s0045 Capsella rubella HOM05D005341 ORTHO05D006712 6.7e-122 441.0 280 72.9
FAN12G2540 Fragaria x ananassa HOM05D005341 ORTHO05D006712 6.7e-122 441.0 282 74.8
BcaB07g30394 Brassica carinata HOM05D005341 ORTHO05D006712 8.8e-122 440.7 280 72.5
Aa31LG2G8430 Aethionema arabicum HOM05D005341 ORTHO05D006712 2.0e-121 439.5 288 72.9
Lj4g0007741 Lotus japonicus HOM05D005341 ORTHO05D006712 2.0e-121 439.5 279 75.3
unitig_27.g25178 Utricularia gibba HOM05D005341 ORTHO05D006712 2.0e-121 439.5 283 73.1
Gorai.002G178300 Gossypium raimondii HOM05D005341 ORTHO05D006712 2.6e-121 439.1 283 74.9
Gohir.D01G144400 Gossypium hirsutum HOM05D005341 ORTHO05D006712 3.3e-121 438.7 283 74.9
FAN07G0561 Fragaria x ananassa HOM05D005341 ORTHO05D006712 7.5e-121 437.6 282 74.1
MD13G1023900 Malus domestica HOM05D005341 ORTHO05D006712 9.7e-121 437.2 284 73.6
VMungo0251G3738 Vigna mungo HOM05D005341 ORTHO05D006712 1.3e-120 436.8 277 74.4
MELO3C026795.2 Cucumis melo HOM05D005341 ORTHO05D006712 1.7e-120 436.4 280 72.9
FAN22G2374 Fragaria x ananassa HOM05D005341 ORTHO05D006712 3.7e-120 435.3 281 74.4
Lj6A744T53 Lonicera japonica HOM05D005341 ORTHO05D006712 8.2e-120 434.1 286 75.2
Duzib251G0346 Durio zibethinus HOM05D005341 ORTHO05D006712 1.8e-119 433.0 283 75.3
ClCG11G001200 Citrullus lanatus HOM05D005341 ORTHO05D006712 2.4e-119 432.6 280 72.5
Sc04g0005370 Simmondsia chinensis HOM05D005341 ORTHO05D006712 4.1e-119 431.8 282 72.0
Nitab4.5_0000688g0150 Nicotiana tabacum HOM05D005341 ORTHO05D006712 9.1e-119 430.6 274 75.9
Gohir.A01G151200 Gossypium hirsutum HOM05D005341 ORTHO05D006712 1.2e-118 430.3 283 73.9
Psat7g129280 Pisum sativum HOM05D005341 ORTHO05D006712 1.0e-117 427.2 279 73.1
THA.LOC104823806 Tarenaya hassleriana HOM05D005341 ORTHO05D006712 1.7e-117 426.4 282 71.6
Sabra06G0172200 Salix brachista HOM05D005341 ORTHO05D006712 2.9e-117 425.6 315 66.3
HPP92_005883 Vanilla planifolia HOM05D005341 ORTHO05D006712 5.0e-117 424.9 283 72.1
SEGI_27003 Sequoiadendron giganteum HOM05D005341 ORTHO05D006712 1.9e-116 422.9 280 69.3
Medtr4g084560 Medicago truncatula HOM05D005341 ORTHO05D006712 5.5e-116 421.4 287 71.8
Migut.E00437 Erythranthe guttata HOM05D005341 ORTHO05D006712 7.2e-116 421.0 283 72.1
AUR62039516 Chenopodium quinoa HOM05D005341 ORTHO05D006712 6.1e-115 417.9 268 74.3
ECA234G4311 Erigeron canadensis HOM05D005341 ORTHO05D006712 2.3e-114 416.0 283 71.7
Oeu062657.1 Olea europaea HOM05D005341 ORTHO05D006712 1.5e-113 413.3 270 74.4
EL10Ac3g06547 Beta vulgaris HOM05D005341 ORTHO05D006712 2.0e-113 412.9 268 73.5
Ca_18745_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 1.3e-112 410.2 276 73.6
Rhsim09G0096600 Rhododendron simsii HOM05D005341 ORTHO05D006712 2.8e-112 409.1 297 68.4
Phvul.002G095700 Phaseolus vulgaris HOM05D005341 ORTHO05D006712 1.4e-111 406.8 248 76.6
SalBow8G3124 Salvia bowleyana HOM05D005341 ORTHO05D006712 5.4e-111 404.8 281 69.4
SalBow8G3488 Salvia bowleyana HOM05D005341 ORTHO05D006712 5.4e-111 404.8 281 69.4
Os05g0473900 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 2.5e-108 396.0 276 67.4
Os03g0708100 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 7.2e-108 394.4 276 67.4
SHI36659 Sapria himalayana HOM05D005341 ORTHO05D006712 2.7e-107 392.5 269 68.8
AUR62014184 Chenopodium quinoa HOM05D005341 ORTHO05D006712 5.2e-106 388.3 250 73.2
SMO358G0398 Selaginella moellendorffii HOM05D005341 ORTHO05D006712 5.7e-105 384.8 261 68.2
Ca_29576_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 9.8e-105 384.0 263 73.8
SGA_v2.0_scaffold39G15193 Striga asiatica HOM05D005341 ORTHO05D006712 1.1e-103 380.6 236 75.4
CANSAT25G0384 Cannabis sativa HOM05D005341 ORTHO05D006712 5.4e-103 378.3 283 66.8
Zm00001eb054520 Zea mays HOM05D005341 ORTHO05D006712 2.5e-100 369.4 264 65.5
BolC9t55880H Brassica oleracea HOM05D005341 ORTHO05D006712 8.9e-98 360.9 251 66.5
C09p30150 Brassica napus HOM05D005341 ORTHO05D006712 3.4e-97 359.0 251 66.5
vmacro10652 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 3.3e-92 342.4 424 46.2
Pp3c7_14500 Physcomitrium patens HOM05D005341 ORTHO05D006712 1.2e-89 334.0 282 55.3
MBI12_g12675_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 1.5e-89 333.6 190 82.1
BcaC04g21581 Brassica carinata HOM05D005341 ORTHO05D006712 5.8e-89 331.6 248 63.3
Mapoly0012s0126 Marchantia polymorpha HOM05D005341 ORTHO05D006712 2.9e-88 329.3 288 56.6
vmacro10649 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 4.3e-84 315.5 418 44.7
Cre16.g673281 Chlamydomonas reinhardtii HOM05D005341 ORTHO05D006712 6.2e-83 311.6 280 53.6
Zm00001eb216580 Zea mays HOM05D005341 ORTHO05D006712 1.5e-81 307.0 267 58.1
CBR_g31524 Chara braunii HOM05D005341 ORTHO05D006712 1.4e-74 283.9 266 54.9
MCO03G480 Micromonas commoda HOM05D005341 ORTHO05D006712 1.2e-73 280.8 283 48.8
Zm00001eb409650 Zea mays HOM05D005341 ORTHO05D006712 1.3e-72 277.3 167 76.0
Zm00001eb142690 Zea mays HOM05D005341 ORTHO05D006712 8.4e-72 274.6 167 75.4
Oeu018602.1 Olea europaea HOM05D005341 ORTHO05D006712 1.2e-70 270.8 144 84.0
Zm00001eb341930 Zea mays HOM05D005341 ORTHO05D006712 1.2e-70 270.8 176 71.6
unitig_29.g31871 Utricularia gibba HOM05D005341 ORTHO05D006712 1.6e-70 270.4 308 47.4
AagrBONN_evm.TU.Sc2ySwM_228.566 Anthoceros agrestis HOM05D005341 ORTHO05D006712 5.1e-69 265.4 180 65.0
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 1.1e-60 237.7 147 74.1
PRCOL_00000921 Prasinoderma coloniale HOM05D005341 ORTHO05D006712 3.3e-60 236.1 295 43.1
Cfa022618 Carpinus fangiana HOM05D005341 ORTHO05D006712 4.4e-57 225.7 295 42.7
AagrBONN_evm.TU.Sc2ySwM_117.3795 Anthoceros agrestis HOM05D005341 ORTHO05D006712 3.9e-53 212.6 147 63.9
A09p23410 Brassica napus HOM05D005341 ORTHO05D006712 3.3e-52 209.5 249 47.4
Haze_10984 Corylus avellana HOM05D005341 ORTHO05D006712 5.8e-49 198.7 142 68.3
FAN17G2406 Fragaria x ananassa HOM05D005341 ORTHO05D006712 7.1e-47 191.8 135 70.4
BraA09t37941Z Brassica rapa HOM05D005341 ORTHO05D006712 2.3e-45 186.8 248 44.4
Haze_10982 Corylus avellana HOM05D005341 ORTHO05D006712 3.3e-44 183.0 156 59.0
Haze_27483 Corylus avellana HOM05D005341 ORTHO05D006712 3.8e-40 169.5 229 40.6
BcaB07g30743 Brassica carinata HOM05D005341 ORTHO05D006712 1.5e-28 131.0 110 56.4
CAN.G651.12 Capsicum annuum HOM05D005428 ORTHO05D006876 4.3e-28 129.4 75 80.0
RcHm_v2.0_Chr6g0283021 Rosa chinensis HOM05D006769 ORTHO05D008522 1.6e-27 127.5 70 81.4
Zm00001eb025440 Zea mays HOM05D005341 ORTHO05D006712 2.6e-25 120.2 72 75.0
Zm00001eb049700 Zea mays HOM05D005341 ORTHO05D006712 2.6e-25 120.2 72 75.0
MBI12_g12674_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 1.1e-23 114.8 80 67.5
FvH4_3g28840 Fragaria vesca HOM05D005341 ORTHO05D006712 6.9e-18 95.5 80 58.8
FAN24G2017 Fragaria x ananassa HOM05D005341 ORTHO05D006712 5.9e-17 92.4 86 58.1
FAN18G3043 Fragaria x ananassa HOM05D005341 ORTHO05D006712 7.7e-17 92.0 75 61.3
Actinidia14980 Actinidia chinensis HOM05D005341 ORTHO05D006712 1.1e-15 88.2 95 51.6
CDE11G1102 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 1.4e-15 87.8 87 54.0
FAN01G1793 Fragaria x ananassa HOM05D000061 ORTHO05D003487 3.2e-15 86.7 92 50.0
GSVIVG01029848001 Vitis vinifera HOM05D000172 ORTHO05D000273 7.9e-14 82.0 57 70.2
CBR_g37149 Chara braunii HOM05D005341 ORTHO05D017343 1.3e-08 64.7 172 27.3
SMO119G0520 Selaginella moellendorffii HOM05D019566 ORTHO05D017343 6.1e-06 55.8 106 33.0


User provided reference genes

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