Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 6.2e-160 567.4 284 100.0
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 2.7e-139 498.8 288 88.5
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 2.9e-64 249.6 311 51.1
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 6.4e-64 248.4 324 50.9
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 4.6e-62 242.3 315 51.1
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 1.1e-60 237.7 314 48.1
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 4.0e-42 176.0 290 38.3
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 4.8e-35 152.5 278 38.8
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 6.3e-35 152.1 278 39.2
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 2.4e-34 150.2 188 45.7
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 2.6e-33 146.7 174 44.8
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 4.2e-31 139.4 174 43.7
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 9.3e-31 138.3 284 35.9
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 1.6e-30 137.5 253 34.4
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 2.1e-30 137.1 284 35.9
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 3.6e-30 136.3 185 41.1
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 4.6e-30 136.0 176 43.2
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 6.1e-30 135.6 177 47.5
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 3.3e-28 129.8 192 42.7
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 1.3e-27 127.9 175 40.0
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 1.6e-27 127.5 170 40.6
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 2.2e-27 127.1 194 39.2
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 4.8e-27 125.9 175 43.4
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 8.2e-27 125.2 186 40.9
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 1.1e-26 124.8 221 34.8
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 1.1e-26 124.8 176 39.8
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 1.1e-26 124.8 175 42.9
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 3.1e-26 123.2 172 40.7
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 3.1e-26 123.2 172 40.7
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 4.1e-26 122.9 170 42.4
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 5.3e-26 122.5 249 36.5
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 5.3e-26 122.5 249 36.5
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 6.9e-26 122.1 174 41.4
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 6.9e-26 122.1 175 42.3
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 9.0e-26 121.7 173 41.0
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 9.0e-26 121.7 175 40.6
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 9.0e-26 121.7 169 42.0
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 1.5e-25 120.9 170 41.2
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 2.0e-25 120.6 173 42.2
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 3.4e-25 119.8 173 42.8
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 4.5e-25 119.4 177 42.9
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 4.5e-25 119.4 172 42.4
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 5.9e-25 119.0 232 34.9
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 5.9e-25 119.0 246 35.0
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 5.9e-25 119.0 246 35.0
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 5.9e-25 119.0 175 40.6
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 5.9e-25 119.0 239 35.1
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 5.9e-25 119.0 183 37.7
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 5.9e-25 119.0 173 41.0
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 7.7e-25 118.6 173 42.2
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 1.0e-24 118.2 176 41.5
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 1.0e-24 118.2 174 37.9
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 1.3e-24 117.9 232 34.9
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 1.3e-24 117.9 174 39.7
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 1.3e-24 117.9 174 39.7
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 2.2e-24 117.1 231 35.9
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 2.2e-24 117.1 224 36.2
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 2.9e-24 116.7 284 32.0
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 2.9e-24 116.7 267 33.0
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 2.9e-24 116.7 235 35.3
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 2.9e-24 116.7 170 40.6
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 5.0e-24 115.9 239 37.2
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 5.0e-24 115.9 239 37.2
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 5.0e-24 115.9 186 37.6
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 6.5e-24 115.5 206 35.4
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 1.1e-23 114.8 239 32.2
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 1.1e-23 114.8 230 35.7
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 1.1e-23 114.8 182 37.4
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 1.1e-23 114.8 204 38.2
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 1.1e-23 114.8 173 39.9
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.1e-23 114.8 180 37.8
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 1.1e-23 114.8 173 41.6
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 1.4e-23 114.4 176 37.5
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 1.4e-23 114.4 162 39.5
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 1.9e-23 114.0 181 40.9
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 3.2e-23 113.2 170 39.4
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 3.2e-23 113.2 170 39.4
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 5.5e-23 112.5 229 35.8
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 7.2e-23 112.1 225 35.1
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 7.2e-23 112.1 225 35.1
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 7.2e-23 112.1 169 37.9
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 7.2e-23 112.1 169 37.9
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 9.4e-23 111.7 176 36.9
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 9.4e-23 111.7 250 34.0
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.2e-22 111.3 171 40.9
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.2e-22 111.3 198 33.8
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 1.6e-22 110.9 186 37.1
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 1.6e-22 110.9 173 39.3
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 2.1e-22 110.5 233 33.5
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 2.1e-22 110.5 230 33.9
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 2.1e-22 110.5 193 35.2
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 2.1e-22 110.5 175 37.1
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 2.1e-22 110.5 189 38.6
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 2.7e-22 110.2 176 36.9
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 2.7e-22 110.2 192 36.5
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 3.6e-22 109.8 170 38.2
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 4.6e-22 109.4 239 32.6
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 4.6e-22 109.4 176 36.4
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 4.6e-22 109.4 158 40.5
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 4.6e-22 109.4 169 37.3
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 6.1e-22 109.0 202 36.6
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 7.9e-22 108.6 170 37.1
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 7.9e-22 108.6 170 38.2
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 1.0e-21 108.2 171 39.8
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 1.0e-21 108.2 184 38.0
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 1.4e-21 107.8 176 39.2
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 1.4e-21 107.8 246 35.0
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 1.4e-21 107.8 176 39.2
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 1.8e-21 107.5 176 38.1
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 1.8e-21 107.5 176 38.1
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 2.3e-21 107.1 171 38.6
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 2.3e-21 107.1 189 38.1
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 3.0e-21 106.7 176 38.6
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 3.0e-21 106.7 251 31.1
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 3.9e-21 106.3 195 36.4
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 6.7e-21 105.5 171 38.6
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 6.7e-21 105.5 176 35.2
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 8.8e-21 105.1 185 37.3
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 8.8e-21 105.1 158 40.5
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 1.1e-20 104.8 181 37.6
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 1.5e-20 104.4 172 39.5
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 4.3e-20 102.8 181 32.6
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 1.3e-19 101.3 172 36.0
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 1.3e-19 101.3 189 37.6
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 2.8e-19 100.1 195 32.8
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 2.8e-19 100.1 191 33.5
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 3.7e-19 99.8 172 36.0
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 8.2e-19 98.6 163 35.6
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 8.2e-19 98.6 194 34.0
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 8.2e-19 98.6 173 36.4
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 8.2e-19 98.6 169 38.5
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 1.4e-18 97.8 169 36.7
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 1.8e-18 97.4 234 30.3
Pp3c14_17300 Physcomitrium patens HOM05D004173 ORTHO05D004885 4.1e-18 96.3 186 32.3
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 1.5e-17 94.4 175 38.3
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 2.0e-17 94.0 185 34.6
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 2.0e-17 94.0 181 35.4
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 4.5e-17 92.8 222 31.5
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 5.9e-17 92.4 186 33.3
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 1.0e-16 91.7 157 38.2
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 1.3e-16 91.3 153 40.5
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.2e-16 90.5 186 34.9
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 2.2e-16 90.5 186 34.9
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 2.2e-16 90.5 178 38.2
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 6.5e-16 89.0 178 36.5
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.4e-15 87.8 135 36.3
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 4.2e-15 86.3 135 36.3
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 5.5e-15 85.9 135 36.3
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 1.2e-14 84.7 176 34.7
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 1.6e-14 84.3 152 34.9
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 1.6e-14 84.3 173 34.1
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 4.7e-14 82.8 152 36.2
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 1.8e-13 80.9 170 32.9
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 1.1e-12 78.2 213 32.4
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 1.3e-11 74.7 152 32.9
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 1.1e-10 71.6 161 32.9
CBR_g24287 Chara braunii HOM05D004173 ORTHO05D004885 4.1e-10 69.7 235 26.8
Pp3c10_16350 Physcomitrium patens HOM05D004173 ORTHO05D004885 1.6e-09 67.8 163 28.8
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 3.5e-09 66.6 90 43.3
Phvul.009G044000 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 7.7e-09 65.5 61 54.1
Mapoly0082s0027 Marchantia polymorpha HOM05D004173 ORTHO05D004885 1.3e-08 64.7 184 29.3
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 3.2e-07 60.1 101 33.7
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.2e-06 58.2 135 28.9
Nitab4.5_0000375g0240 Nicotiana tabacum HOM05D004173 ORTHO05D004885 2.1e-06 57.4 104 32.7
CAN.G546.44 Capsicum annuum HOM05D004173 ORTHO05D004885 6.1e-06 55.8 104 30.8


User provided reference genes

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