Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 6.7e-238 827.0 434 100.0
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 9.3e-232 806.6 434 98.6
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 1.6e-143 513.5 441 65.8
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 2.0e-141 506.5 399 67.4
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 3.8e-140 502.3 401 66.6
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 4.9e-140 501.9 404 65.6
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 1.4e-139 500.4 394 69.0
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 2.4e-139 499.6 438 65.1
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 6.0e-138 495.0 396 68.7
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 5.1e-137 491.9 442 62.7
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 2.5e-136 489.6 394 64.7
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 4.3e-136 488.8 402 64.4
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 7.3e-136 488.0 440 65.5
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 2.1e-135 486.5 392 65.3
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 2.8e-135 486.1 398 63.8
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 3.6e-135 485.7 445 63.1
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 3.6e-135 485.7 405 65.2
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 3.6e-135 485.7 444 62.4
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 1.8e-134 483.4 394 63.7
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 2.4e-134 483.0 389 67.1
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 2.4e-134 483.0 440 63.6
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 2.4e-134 483.0 400 63.2
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 1.5e-133 480.3 393 65.6
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 4.5e-133 478.8 404 62.6
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 4.5e-133 478.8 405 62.7
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 5.8e-133 478.4 389 65.6
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 9.9e-133 477.6 439 62.4
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 1.3e-132 477.2 442 61.8
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.2e-132 476.5 396 65.4
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 2.9e-132 476.1 390 65.9
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 2.9e-132 476.1 438 61.6
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 8.4e-132 474.6 440 62.3
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 8.4e-132 474.6 440 62.3
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 8.4e-132 474.6 444 62.4
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.1e-131 474.2 396 64.9
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 1.1e-131 474.2 440 62.5
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 1.4e-131 473.8 392 64.5
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 1.4e-131 473.8 394 65.7
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 4.2e-131 472.2 440 62.0
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 5.4e-131 471.9 440 60.5
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 5.4e-131 471.9 394 65.2
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 7.1e-131 471.5 405 63.2
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 7.1e-131 471.5 440 62.0
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 2.1e-130 469.9 399 63.4
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 2.7e-130 469.5 407 62.9
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 1.3e-129 467.2 407 62.9
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 1.3e-129 467.2 388 64.7
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 1.8e-129 466.8 389 64.5
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 1.8e-129 466.8 392 63.0
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 1.8e-129 466.8 442 63.1
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 2.3e-129 466.5 439 63.6
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 5.1e-129 465.3 442 60.4
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 1.9e-128 463.4 398 60.8
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 4.3e-128 462.2 442 60.9
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 7.4e-128 461.5 407 60.9
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 4.8e-127 458.8 393 62.8
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 1.4e-126 457.2 411 58.9
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 1.4e-126 457.2 396 63.4
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 1.8e-126 456.8 443 60.9
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 2.4e-126 456.4 405 62.5
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 4.0e-126 455.7 391 63.2
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 1.5e-125 453.8 402 61.2
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 3.4e-125 452.6 421 59.6
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 4.5e-125 452.2 417 58.8
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 1.0e-124 451.1 404 61.1
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 2.9e-124 449.5 441 60.5
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 3.2e-123 446.0 394 63.7
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 9.3e-123 444.5 404 59.9
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 9.3e-123 444.5 395 60.5
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 2.1e-122 443.4 398 60.6
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 7.9e-122 441.4 398 59.8
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 7.9e-122 441.4 398 59.8
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 7.9e-122 441.4 437 57.9
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 5.1e-121 438.7 402 61.2
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 5.1e-121 438.7 401 56.9
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 6.7e-121 438.3 363 65.3
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 8.7e-121 438.0 390 63.3
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 1.1e-120 437.6 405 58.5
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 3.7e-119 432.6 391 59.6
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 4.0e-118 429.1 435 59.1
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 4.0e-118 429.1 398 60.8
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 4.0e-118 429.1 396 61.6
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 5.3e-118 428.7 414 62.8
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 1.2e-117 427.6 435 59.3
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 2.0e-117 426.8 435 59.5
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 4.5e-117 425.6 439 58.5
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 1.7e-116 423.7 439 58.5
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 1.1e-115 421.0 402 56.5
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 1.4e-115 420.6 440 57.7
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 1.9e-115 420.2 412 56.8
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 4.2e-115 419.1 402 59.7
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 5.5e-115 418.7 396 58.8
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 7.1e-115 418.3 450 56.2
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 9.3e-115 417.9 438 58.0
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 3.9e-113 412.5 436 58.9
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 3.9e-113 412.5 398 58.8
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 6.7e-113 411.8 398 58.5
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 1.1e-112 411.0 436 58.7
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 1.1e-112 411.0 436 58.7
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 1.1e-112 411.0 439 57.6
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 3.3e-112 409.5 395 56.7
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 9.7e-112 407.9 387 56.3
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 6.3e-111 405.2 439 52.8
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 1.4e-110 404.1 440 57.7
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 2.4e-110 403.3 389 55.3
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 1.3e-108 397.5 397 57.4
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 6.5e-108 395.2 435 56.8
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 2.7e-106 389.8 423 51.1
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 3.6e-106 389.4 440 55.9
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 4.6e-106 389.0 439 58.1
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 1.8e-105 387.1 441 55.6
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 3.0e-105 386.3 440 55.7
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 5.7e-104 382.1 439 55.6
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 1.3e-103 380.9 392 55.4
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 2.8e-103 379.8 387 55.8
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 2.2e-100 370.2 316 61.4
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 8.5e-100 368.2 394 52.5
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 8.8e-97 358.2 405 47.7
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 1.1e-96 357.8 409 47.9
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.7e-95 354.0 409 48.2
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 1.2e-90 337.8 310 60.0
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 2.1e-82 310.5 419 45.3
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 1.3e-79 301.2 322 51.9
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 4.1e-70 269.6 241 60.2
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 5.4e-70 269.2 319 47.6
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 1.7e-63 247.7 390 38.5
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 4.3e-59 233.0 258 49.2
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 4.3e-59 233.0 228 57.5
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 5.2e-57 226.1 204 61.8
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 9.8e-56 221.9 223 51.6
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 5.4e-54 216.1 171 65.5
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 2.0e-53 214.2 203 65.5
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 2.3e-52 210.7 200 70.5
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 2.4e-46 190.7 152 67.8
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 3.9e-44 183.3 174 58.0
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 1.2e-40 171.8 356 32.6
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 4.9e-39 166.4 308 34.4
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 8.1e-18 95.9 99 50.5
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 4.2e-14 83.6 76 53.9
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.2e-13 82.0 77 53.2
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 2.6e-08 64.3 165 30.9


User provided reference genes

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