Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 0.0e+00 1662.9 817 100.0
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 0.0e+00 1563.9 817 94.9
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 4.7e-261 904.8 830 55.5
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 1.8e-260 902.9 839 54.4
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 5.2e-260 901.4 815 55.7
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 5.1e-255 884.8 827 54.2
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 3.3e-254 882.1 869 52.4
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 7.3e-254 880.9 792 55.6
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 1.8e-252 876.3 817 54.2
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 2.4e-252 875.9 818 53.9
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 2.4e-252 875.9 784 55.5
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 3.2e-249 865.5 799 54.7
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 7.1e-249 864.4 823 53.5
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 9.3e-249 864.0 818 54.2
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 1.6e-248 863.2 780 55.4
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 7.8e-248 860.9 818 52.7
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 6.6e-247 857.8 823 53.3
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 9.6e-246 854.0 830 52.7
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 2.1e-245 852.8 795 53.5
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 3.6e-245 852.0 831 53.1
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 6.9e-244 847.8 834 53.2
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 1.5e-243 846.7 818 52.3
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 6.4e-242 841.3 828 52.3
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 5.4e-241 838.2 823 53.3
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 4.6e-240 835.1 839 51.6
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 1.1e-238 830.5 798 54.3
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 2.5e-238 829.3 768 53.9
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 5.6e-238 828.2 768 55.1
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 1.3e-237 827.0 820 53.0
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 3.7e-237 825.5 790 52.7
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 6.2e-237 824.7 827 51.9
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 8.1e-237 824.3 802 53.1
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 1.1e-236 823.9 824 51.5
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.8e-236 823.2 824 51.5
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 4.0e-236 822.0 820 52.2
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 1.2e-235 820.5 846 49.9
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 2.6e-235 819.3 806 53.0
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 2.6e-235 819.3 818 50.4
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 3.4e-235 818.9 770 54.2
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 7.6e-235 817.8 741 55.1
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 7.6e-235 817.8 786 52.0
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 1.3e-234 817.0 794 51.8
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 3.8e-234 815.5 808 52.2
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 6.4e-234 814.7 817 52.4
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 1.4e-233 813.5 818 52.3
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 1.9e-233 813.1 799 50.3
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 3.2e-233 812.4 812 51.2
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 2.7e-232 809.3 797 51.3
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 3.5e-232 808.9 820 52.4
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 3.9e-231 805.4 810 50.5
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 1.6e-229 800.0 835 49.7
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 2.8e-229 799.3 813 50.7
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 8.2e-229 797.7 815 51.0
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 1.1e-228 797.3 816 52.5
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 3.1e-228 795.8 791 51.5
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 3.1e-228 795.8 807 49.2
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 9.0e-228 794.3 778 51.9
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 2.6e-227 792.7 837 48.6
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 1.3e-226 790.4 773 51.0
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 1.7e-226 790.0 815 50.7
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 1.7e-226 790.0 815 50.6
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 3.8e-226 788.9 798 51.5
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 8.4e-226 787.7 803 50.9
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 8.4e-226 787.7 827 50.7
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 2.5e-225 786.2 757 53.0
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 7.1e-225 784.6 817 50.2
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 7.1e-225 784.6 797 50.9
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.2e-224 783.9 831 48.3
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 1.8e-223 780.0 819 49.9
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 3.0e-223 779.2 794 51.0
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 3.0e-223 779.2 806 49.4
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 5.1e-223 778.5 820 48.2
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 8.7e-223 777.7 835 48.3
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 1.1e-222 777.3 792 50.0
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 1.9e-222 776.5 773 50.2
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 4.3e-222 775.4 806 50.7
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 7.4e-222 774.6 800 50.4
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 1.6e-221 773.5 822 49.5
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 1.4e-220 770.4 794 50.3
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 9.0e-220 767.7 822 48.8
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 1.5e-219 766.9 798 50.8
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 2.0e-219 766.5 812 48.5
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 2.6e-219 766.1 743 53.3
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 6.5e-218 761.5 801 50.2
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 1.1e-217 760.8 801 50.2
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 1.1e-217 760.8 801 50.2
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 4.2e-217 758.8 801 50.1
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 9.4e-217 757.7 826 48.4
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.7e-216 756.1 872 45.9
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 1.4e-215 753.8 829 48.4
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 2.3e-215 753.1 823 48.8
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 2.5e-214 749.6 771 51.1
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 6.3e-213 745.0 835 47.8
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 1.8e-212 743.4 806 47.1
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 2.4e-212 743.0 747 52.9
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.2e-211 740.7 837 46.5
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 4.5e-211 738.8 849 47.3
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 4.2e-209 732.3 842 47.0
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 9.4e-209 731.1 678 55.3
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 1.2e-208 730.7 825 47.4
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 1.2e-208 730.7 717 53.4
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 5.1e-207 725.3 820 46.0
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 3.3e-206 722.6 767 49.9
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 3.8e-202 709.1 875 44.9
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 3.2e-201 706.1 714 50.8
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 6.1e-200 701.8 830 44.1
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 1.4e-196 690.6 711 50.1
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 4.1e-196 689.1 849 43.7
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 4.5e-195 685.6 829 44.5
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 9.4e-193 677.9 820 43.7
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.8e-191 673.7 687 50.4
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 7.0e-188 661.8 941 41.7
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 4.0e-183 646.0 683 49.2
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 1.1e-180 637.9 670 48.8
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 1.8e-180 637.1 841 43.3
vmacro20915 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 3.6e-176 622.9 643 49.6
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 3.7e-173 612.8 814 40.8
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 9.8e-166 588.2 851 40.7
MD01G1067200 Malus domestica HOM05D004502 ORTHO05D005579 4.1e-164 582.8 592 49.5
Zm00001eb222430 Zea mays HOM05D004502 ORTHO05D005579 3.6e-160 569.7 689 44.1
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 1.5e-158 564.3 527 52.6
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 1.1e-153 548.1 711 44.2
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 2.3e-151 540.4 713 42.8
DCAR_008618 Daucus carota HOM05D004502 ORTHO05D005579 2.1e-136 490.7 388 60.6
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 3.6e-128 463.4 712 37.5
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 7.1e-124 449.1 726 36.4
Glyma.16G034551 Glycine max HOM05D004502 ORTHO05D005579 2.7e-123 447.2 339 64.0
TAR375G0606 Trochodendron aralioides HOM05D004502 ORTHO05D005579 3.5e-123 446.8 456 50.0
Gohir.A08G131800 Gossypium hirsutum HOM05D004502 ORTHO05D005579 5.1e-122 443.0 345 63.5
Ah.05g180370 Amaranthus hybridus HOM05D004502 ORTHO05D005579 1.6e-112 411.4 529 41.8
unitig_26.g9298 Utricularia gibba HOM05D004502 ORTHO05D005579 1.4e-98 365.2 319 53.9
Pp3c10_11170 Physcomitrium patens HOM05D004502 ORTHO05D005579 1.1e-92 345.5 867 29.5
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 1.4e-92 345.1 490 38.6
Mapoly0035s0107 Marchantia polymorpha HOM05D004502 ORTHO05D005579 1.4e-92 345.1 795 28.8
Gohir.A08G131900 Gossypium hirsutum HOM05D004502 ORTHO05D005579 7.9e-91 339.3 433 43.0
Hund14837 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.8e-82 311.6 448 36.6
Glyma.16G034476 Glycine max HOM05D004502 ORTHO05D005579 3.5e-78 297.4 367 44.4
unitig_26.g9297 Utricularia gibba HOM05D004502 ORTHO05D005579 5.2e-74 283.5 403 40.9
Cc08_g14990 Coffea canephora HOM05D004502 ORTHO05D005579 2.0e-70 271.6 286 47.2
CDE06G0820 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 3.2e-68 264.2 353 38.5
MELO3C021197.2 Cucumis melo HOM05D004502 ORTHO05D005579 2.1e-59 235.0 286 45.1
SEGI_07374 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 8.9e-58 229.6 397 34.3
COL.COLO4_28934 Corchorus olitorius HOM05D004502 ORTHO05D005579 1.2e-54 219.2 193 54.9
MD01G1067000 Malus domestica HOM05D004502 ORTHO05D005579 9.2e-47 193.0 179 57.0
vmacro20916 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 2.7e-46 191.4 177 57.1
CBR_g17145 Chara braunii HOM05D004502 ORTHO05D005579 3.6e-27 127.9 116 44.8
MELO3C031211.2 Cucumis melo HOM05D004502 ORTHO05D005579 1.4e-23 115.9 142 44.4
Hund14845 Selenicereus undatus HOM05D004502 ORTHO05D005579 7.1e-23 113.6 112 53.6
Hund14838 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.5e-17 95.9 146 39.0
CDE06G0272 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 4.5e-17 94.4 89 60.7
SEGI_31877 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 3.1e-10 71.6 63 47.6
TPR.G24958 Trifolium pratense HOM05D004502 ORTHO05D005579 3.4e-09 68.2 100 39.0
Hund14846 Selenicereus undatus HOM05D004502 ORTHO05D005579 5.8e-09 67.4 46 56.5
MELO3C034807.2 Cucumis melo HOM05D004502 ORTHO05D011879 9.9e-09 66.6 94 37.2
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 8.4e-08 63.5 36 75.0
arahy.Tifrunner.gnm1.ann1.I8C0YZ Arachis hypogaea HOM05D000064 ORTHO05D001480 7.1e-07 60.5 151 31.8


User provided reference genes

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