Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 2.5e-110 402.1 206 100.0
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 4.8e-53 211.8 209 60.3
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 7.7e-51 204.5 209 60.8
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 8.0e-40 167.9 215 48.8
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 8.0e-40 167.9 215 48.8
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 1.0e-39 167.5 215 48.8
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 8.8e-39 164.5 179 50.3
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 1.2e-38 164.1 209 48.8
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 3.4e-38 162.5 214 48.1
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 4.4e-38 162.2 199 48.7
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.3e-37 160.6 208 48.6
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 1.7e-37 160.2 200 49.0
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 8.3e-37 157.9 191 50.8
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 1.1e-36 157.5 202 48.5
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 1.4e-36 157.1 203 48.3
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 9.1e-36 154.5 200 46.5
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 9.1e-36 154.5 212 42.9
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 2.0e-35 153.3 215 45.6
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 2.0e-35 153.3 215 45.6
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 2.7e-35 152.9 213 47.9
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 3.5e-35 152.5 204 47.1
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 4.5e-35 152.1 215 45.6
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 1.3e-34 150.6 212 46.7
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 1.3e-34 150.6 198 48.5
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 1.7e-34 150.2 198 48.5
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 1.7e-34 150.2 204 48.0
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 1.7e-34 150.2 217 45.2
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 2.3e-34 149.8 209 45.9
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 2.3e-34 149.8 209 45.9
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 5.0e-34 148.7 212 42.0
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 5.0e-34 148.7 211 44.1
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 6.5e-34 148.3 206 47.1
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 6.5e-34 148.3 200 46.0
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 6.5e-34 148.3 208 42.3
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 6.5e-34 148.3 198 48.0
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 6.5e-34 148.3 198 48.0
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 6.5e-34 148.3 198 48.0
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 1.5e-33 147.1 207 45.9
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 1.9e-33 146.7 205 44.4
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 2.5e-33 146.4 162 49.4
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 2.5e-33 146.4 196 46.9
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 4.2e-33 145.6 215 43.7
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 5.5e-33 145.2 202 45.5
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 1.6e-32 143.7 232 42.7
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 2.8e-32 142.9 196 45.9
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 3.6e-32 142.5 197 45.2
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 3.6e-32 142.5 221 42.1
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 4.7e-32 142.1 203 44.8
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 4.7e-32 142.1 221 42.5
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 6.1e-32 141.7 198 46.5
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 1.4e-31 140.6 211 41.7
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 1.4e-31 140.6 212 40.6
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 5.2e-31 138.7 192 46.9
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 6.8e-31 138.3 217 43.3
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 8.9e-31 137.9 212 38.2
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 3.4e-30 136.0 211 41.7
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 3.4e-30 136.0 191 45.0
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 5.7e-30 135.2 207 42.5
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 5.7e-30 135.2 207 42.5
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 1.7e-29 133.7 197 42.1
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 1.7e-29 133.7 191 44.5
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 1.7e-29 133.7 205 42.9
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 2.2e-29 133.3 209 43.1
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 2.8e-29 132.9 207 42.5
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 2.8e-29 132.9 191 44.0
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 2.8e-29 132.9 206 42.2
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 3.7e-29 132.5 196 42.3
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 1.1e-28 131.0 200 41.5
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 1.4e-28 130.6 207 41.5
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 1.4e-28 130.6 207 41.1
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 4.1e-28 129.0 196 42.3
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 4.1e-28 129.0 198 42.4
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 5.4e-28 128.6 206 40.8
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 7.0e-28 128.3 200 40.5
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 7.0e-28 128.3 205 41.0
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 9.2e-28 127.9 207 39.6
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 2.7e-27 126.3 227 37.9
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 1.7e-26 123.6 210 40.5
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 8.6e-26 121.3 198 43.4
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 6.8e-23 111.7 178 45.5
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 1.7e-21 107.1 197 37.1
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 4.6e-19 99.0 222 35.6
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 5.0e-18 95.5 202 37.1
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 8.6e-18 94.7 202 37.1
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.9e-17 93.6 226 34.1
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 1.9e-17 93.6 228 32.9
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 3.3e-17 92.8 202 36.1
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 3.3e-17 92.8 202 36.1
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 3.3e-17 92.8 202 36.1
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 5.6e-17 92.0 134 40.3
Os10g0575800 Oryza sativa ssp. japonica HOM05D004277 ORTHO05D005148 1.2e-16 90.9 99 44.4
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 2.8e-16 89.7 78 65.4
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 1.4e-15 87.4 154 39.6
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 6.4e-13 78.6 58 70.7
Cpa.g.sc34.4 Carica papaya HOM05D004277 ORTHO05D005148 1.9e-12 77.0 104 42.3
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 1.9e-12 77.0 72 55.6
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 2.4e-12 76.6 66 62.1
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 7.0e-12 75.1 90 47.8
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 1.2e-11 74.3 152 36.2
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 1.3e-10 70.9 205 27.8
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 3.9e-10 69.3 71 54.9
SHI21617 Sapria himalayana HOM05D004277 ORTHO05D005148 5.0e-10 68.9 98 37.8
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 2.1e-08 63.5 146 30.1
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 6.2e-08 62.0 216 26.9
MD10G1205700 Malus domestica HOM05D004277 ORTHO05D005148 1.2e-06 57.8 87 39.1
MD10G1205500 Malus domestica HOM05D004277 ORTHO05D005148 3.4e-06 56.2 59 45.8


User provided reference genes

Program Settings