Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G2808 Papaver somniferum HOM05D006962 ORTHO05D008696 1.6e-107 392.9 213 100.0
PSO017G7099 Papaver somniferum HOM05D006962 ORTHO05D008696 7.1e-100 367.5 206 94.2
TAR629G1477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 3.2e-23 112.8 210 39.0
CiPaw.05G108100 Carya illinoinensis HOM05D006962 ORTHO05D008696 3.9e-21 105.9 209 39.7
Nn3g16434 Nelumbo nucifera HOM05D006962 ORTHO05D008696 5.0e-21 105.5 171 42.7
QL03p052240 Quercus lobata HOM05D006962 ORTHO05D008696 1.5e-20 104.0 208 37.5
GSVIVG01010505001 Vitis vinifera HOM05D006962 ORTHO05D008696 2.1e-19 100.1 183 39.3
Dinv17575 Davidia involucrata HOM05D006962 ORTHO05D008696 2.3e-18 96.7 176 38.1
TPR.G17769 Trifolium pratense HOM05D006962 ORTHO05D008696 2.3e-18 96.7 171 39.2
Thecc.02G205200 Theobroma cacao HOM05D006962 ORTHO05D008696 3.1e-18 96.3 174 36.8
Cc11_g17050 Coffea canephora HOM05D006962 ORTHO05D008696 4.0e-18 95.9 219 34.2
Rhsim12G0024900 Rhododendron simsii HOM05D006962 ORTHO05D008696 4.0e-18 95.9 163 40.5
MSTRG.13306 Avicennia marina HOM05D006962 ORTHO05D008696 8.9e-18 94.7 166 38.0
Medtr3g085060 Medicago truncatula HOM05D006962 ORTHO05D008696 8.9e-18 94.7 117 47.0
ECA234G1956 Erigeron canadensis HOM05D006962 ORTHO05D008696 2.0e-17 93.6 121 46.3
TWI75G0385 Tripterygium wilfordii HOM05D006962 ORTHO05D008696 2.0e-17 93.6 200 33.0
Ca_16448_v3 Cicer arietinum L. HOM05D006962 ORTHO05D008696 2.6e-17 93.2 165 40.0
MBI07_g28246_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 3.4e-17 92.8 159 40.3
HanXRQChr08g0214941 Helianthus annuus HOM05D006962 ORTHO05D008696 5.8e-17 92.0 145 37.9
CANSAT01G0828 Cannabis sativa HOM05D006962 ORTHO05D008696 7.5e-17 91.7 123 43.9
AUR62028912 Chenopodium quinoa HOM05D006962 ORTHO05D008696 7.5e-17 91.7 164 38.4
CSS0033119 Camellia sinensis var. sinensis HOM05D006962 ORTHO05D008696 9.8e-17 91.3 170 38.8
AUR62005637 Chenopodium quinoa HOM05D006962 ORTHO05D008696 9.8e-17 91.3 164 38.4
ATR0561G196 Amborella trichopoda HOM05D006962 ORTHO05D008696 1.3e-16 90.9 166 38.0
Peaxi162Scf00128g01332 Petunia axillaris HOM05D006962 ORTHO05D008696 1.3e-16 90.9 171 37.4
TAR636G2109 Trochodendron aralioides HOM05D006962 ORTHO05D008696 1.7e-16 90.5 208 37.0
Glyma.18G005200 Glycine max HOM05D006962 ORTHO05D008696 3.7e-16 89.4 137 43.8
Gohir.D04G183600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 3.7e-16 89.4 199 35.2
Manes.13G010300 Manihot esculenta HOM05D006962 ORTHO05D008696 4.9e-16 89.0 111 49.5
VMungo1383G1469 Vigna mungo HOM05D006962 ORTHO05D008696 4.9e-16 89.0 188 34.6
Aqoxy3G01577 Aquilegia oxysepala HOM05D006962 ORTHO05D008696 6.4e-16 88.6 167 39.5
MBI07_g11269_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 6.4e-16 88.6 164 37.2
Gorai.012G176600 Gossypium raimondii HOM05D006962 ORTHO05D008696 8.3e-16 88.2 198 33.8
PGSC0003DMG400034312 Solanum tuberosum HOM05D006962 ORTHO05D008696 1.1e-15 87.8 165 34.5
COL.COLO4_20424 Corchorus olitorius HOM05D006962 ORTHO05D008696 1.9e-15 87.0 199 31.7
Nitab4.5_0006369g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 1.9e-15 87.0 164 35.4
Gohir.A04G140400 Gossypium hirsutum HOM05D006962 ORTHO05D008696 2.4e-15 86.7 194 34.5
Psat5g097440 Pisum sativum HOM05D006962 ORTHO05D008696 2.4e-15 86.7 154 37.7
ClCG06G002190 Citrullus lanatus HOM05D006962 ORTHO05D008696 3.2e-15 86.3 192 37.0
MELO3C022311.2 Cucumis melo HOM05D006962 ORTHO05D008696 3.2e-15 86.3 193 35.8
Sc14g0009120 Simmondsia chinensis HOM05D006962 ORTHO05D008696 3.2e-15 86.3 199 37.7
Atru.chr11.2343 Acer truncatum HOM05D006962 ORTHO05D008696 4.1e-15 85.9 65 67.7
Duzib251G0823 Durio zibethinus HOM05D006962 ORTHO05D008696 5.4e-15 85.5 143 44.1
arahy.Tifrunner.gnm1.ann1.AWLH2F Arachis hypogaea HOM05D006962 ORTHO05D008696 7.0e-15 85.1 175 34.3
Cfa009377 Carpinus fangiana HOM05D006962 ORTHO05D008696 9.2e-15 84.7 191 35.1
Lj6g0020338 Lotus japonicus HOM05D006962 ORTHO05D008696 1.2e-14 84.3 156 37.2
Ah.03g136040 Amaranthus hybridus HOM05D006962 ORTHO05D008696 1.6e-14 84.0 124 41.9
Sed0011154 Sechium edule HOM05D006962 ORTHO05D008696 1.6e-14 84.0 61 67.2
CAN.G1124.2 Capsicum annuum HOM05D006962 ORTHO05D008696 2.7e-14 83.2 165 35.2
Ciclev10032798m.g Citrus clementina HOM05D006962 ORTHO05D008696 2.7e-14 83.2 184 34.2
Os02g0509600 Oryza sativa ssp. japonica HOM05D006962 ORTHO05D008696 3.5e-14 82.8 134 37.3
Lalb_Chr23g0278151 Lupinus albus HOM05D006962 ORTHO05D008696 4.6e-14 82.4 137 38.7
Nitab4.5_0000996g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 4.6e-14 82.4 128 38.3
TAR629G0477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 4.6e-14 82.4 126 46.8
Phvul.001G262900 Phaseolus vulgaris HOM05D006962 ORTHO05D008696 6.0e-14 82.0 61 63.9
THA.LOC104807506 Tarenaya hassleriana HOM05D006962 ORTHO05D008696 6.0e-14 82.0 160 35.6
PGR102G1052 Punica granatum HOM05D006962 ORTHO05D008696 1.0e-13 81.3 129 42.6
Cpa.g.sc43.75 Carica papaya HOM05D006962 ORTHO05D008696 1.3e-13 80.9 178 32.6
CsaV3_6G008260 Cucumis sativus L. HOM05D006962 ORTHO05D008696 1.3e-13 80.9 187 36.9
Haze_12436 Corylus avellana HOM05D006962 ORTHO05D008696 1.7e-13 80.5 150 41.3
Potri.001G057700 Populus trichocarpa HOM05D006962 ORTHO05D008696 1.7e-13 80.5 61 65.6
Prupe.1G224100 Prunus persica HOM05D006962 ORTHO05D008696 3.0e-13 79.7 120 40.8
Sabra01G0041700 Salix brachista HOM05D000660 ORTHO05D000766 3.0e-13 79.7 59 67.8
Solyc05g015640.3 Solanum lycopersicum HOM05D006962 ORTHO05D008696 3.0e-13 79.7 165 34.5
Migut.E00010 Erythranthe guttata HOM05D006962 ORTHO05D008696 3.9e-13 79.3 116 41.4
Sopen05g011100 Solanum pennellii HOM05D006962 ORTHO05D008696 3.9e-13 79.3 128 39.1
Potri.003G170700 Populus trichocarpa HOM05D006962 ORTHO05D008696 6.6e-13 78.6 200 34.0
MELO3C032628.2 Cucumis melo HOM05D006962 ORTHO05D008696 1.5e-12 77.4 163 36.2
CsaV3_4G003050 Cucumis sativus L. HOM05D006962 ORTHO05D008696 1.5e-12 77.4 168 36.9
Eucgr.B03508 Eucalyptus grandis HOM05D006962 ORTHO05D008696 1.5e-12 77.4 179 33.5
C07p17910 Brassica napus HOM05D006962 ORTHO05D008696 1.9e-12 77.0 119 36.1
ClCG07G015460 Citrullus lanatus HOM05D006962 ORTHO05D008696 2.5e-12 76.6 107 42.1
Gohir.A03G124600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 2.5e-12 76.6 65 63.1
Gohir.D03G043133 Gossypium hirsutum HOM05D006962 ORTHO05D008696 3.3e-12 76.3 64 57.8
HPP92_023534 Vanilla planifolia HOM05D006962 ORTHO05D008696 3.3e-12 76.3 127 37.0
BolC7t42297H Brassica oleracea HOM05D006962 ORTHO05D008696 4.3e-12 75.9 119 36.1
Gorai.005G165400 Gossypium raimondii HOM05D006962 ORTHO05D008696 5.6e-12 75.5 113 44.2
Gohir.D02G147600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 7.3e-12 75.1 135 40.7
Zm00001eb180910 Zea mays HOM05D006962 ORTHO05D008696 9.5e-12 74.7 124 36.3
CDE05G3434 Ceratophyllum demersum HOM05D006962 ORTHO05D008696 1.6e-11 73.9 64 53.1
Glyma.11G251800 Glycine max HOM05D006962 ORTHO05D008696 1.6e-11 73.9 85 54.1
Lsat_1_v5_gn_4_641 Lactuca sativa HOM05D006962 ORTHO05D008696 1.6e-11 73.9 215 31.6
FvH4_4g23570 Fragaria vesca HOM05D006962 ORTHO05D008696 2.1e-11 73.6 124 38.7
Hma1.2p1_0657F.1_g197165 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 2.8e-11 73.2 116 40.5
Hma1.2p1_0967F.1_g242360 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 2.8e-11 73.2 116 40.5
CARHR026870 Cardamine hirsuta HOM05D006962 ORTHO05D008696 3.6e-11 72.8 92 38.0
AL1G40700 Arabidopsis lyrata HOM05D006962 ORTHO05D008696 4.7e-11 72.4 177 28.2
Actinidia08062 Actinidia chinensis HOM05D006962 ORTHO05D008696 8.1e-11 71.6 110 43.6
A09p38640 Brassica napus HOM05D006962 ORTHO05D008696 8.1e-11 71.6 121 34.7
BraA09t39370Z Brassica rapa HOM05D006962 ORTHO05D008696 8.1e-11 71.6 121 34.7
Sabra03G0124800 Salix brachista HOM05D006962 ORTHO05D008696 8.1e-11 71.6 188 31.4
Gorai.003G044100 Gossypium raimondii HOM05D006962 ORTHO05D008696 1.1e-10 71.2 64 57.8
SGA_v2.0_scaffold87G27164 Striga asiatica HOM05D006962 ORTHO05D008696 1.1e-10 71.2 123 38.2
DCAR_007000 Daucus carota HOM05D006962 ORTHO05D008696 1.4e-10 70.9 153 37.3
C05p26000 Brassica napus HOM05D006962 ORTHO05D008696 1.8e-10 70.5 121 34.7
Aa31LG7G9900 Aethionema arabicum HOM05D006962 ORTHO05D008696 5.2e-10 68.9 116 34.5
BcaC05g26736 Brassica carinata HOM05D006962 ORTHO05D008696 5.2e-10 68.9 125 35.2
BolC5t31319H Brassica oleracea HOM05D006962 ORTHO05D008696 5.2e-10 68.9 121 33.9
MD16G1121100 Malus domestica HOM05D006962 ORTHO05D008696 5.2e-10 68.9 131 36.6
Hund25473 Selenicereus undatus HOM05D006962 ORTHO05D008696 5.2e-10 68.9 121 37.2
RcHm_v2.0_Chr4g0429971 Rosa chinensis HOM05D006962 ORTHO05D008696 6.8e-10 68.6 180 31.7
BcaB03g14005 Brassica carinata HOM05D006962 ORTHO05D008696 1.2e-09 67.8 71 43.7
Zm00001eb241800 Zea mays HOM05D006962 ORTHO05D008696 1.2e-09 67.8 132 31.1
BcaC05g26545 Brassica carinata HOM05D006962 ORTHO05D008696 1.5e-09 67.4 121 33.1
Carub.0001s2583 Capsella rubella HOM05D006962 ORTHO05D008696 1.5e-09 67.4 98 36.7
Thhalv10008828m.g Eutrema salsugineum HOM05D006962 ORTHO05D008696 2.0e-09 67.0 119 34.5
Sp1g23540 Schrenkiella parvula HOM05D006962 ORTHO05D008696 2.0e-09 67.0 63 46.0
BcaNung06812 Brassica carinata HOM05D006962 ORTHO05D008696 5.8e-09 65.5 122 32.0
A07p11980 Brassica napus HOM05D006962 ORTHO05D008696 1.9e-07 60.5 59 44.1
BraA07t28983Z Brassica rapa HOM05D006962 ORTHO05D008696 2.4e-07 60.1 59 44.1
AT1G27300 Arabidopsis thaliana HOM05D006962 ORTHO05D008696 2.1e-06 57.0 91 34.1


User provided reference genes

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