Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G2649 Papaver somniferum HOM05D001925 ORTHO05D004257 1.7e-160 569.3 289 100.0
PSO782G1204 Papaver somniferum HOM05D001925 ORTHO05D004257 8.0e-147 523.9 288 93.8
TAR375G1105 Trochodendron aralioides HOM05D001925 ORTHO05D004257 3.3e-76 289.3 311 52.4
Nn1g01562 Nelumbo nucifera HOM05D001925 ORTHO05D004257 9.7e-76 287.7 310 54.2
MBI18_g02843_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 5.9e-73 278.5 312 52.9
Nn6g33385 Nelumbo nucifera HOM05D001925 ORTHO05D004257 8.5e-72 274.6 313 53.7
TAR629G3070 Trochodendron aralioides HOM05D001925 ORTHO05D004257 1.1e-71 274.2 313 51.8
Dinv32493 Davidia involucrata HOM05D001925 ORTHO05D004257 2.5e-71 273.1 312 51.0
Actinidia02837 Actinidia chinensis HOM05D001925 ORTHO05D004257 2.7e-70 269.6 304 50.0
Atru.chr5.510 Acer truncatum HOM05D001925 ORTHO05D004257 1.0e-69 267.7 295 49.8
CSS0032978 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D004257 2.2e-67 260.0 308 47.7
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 1.8e-66 256.9 287 49.5
TWI23G0808 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 9.1e-66 254.6 301 50.8
Aqoxy7G00278 Aquilegia oxysepala HOM05D001925 ORTHO05D004257 2.6e-65 253.1 307 51.5
TAR374G1741 Trochodendron aralioides HOM05D001925 ORTHO05D004257 1.3e-64 250.8 310 48.7
vmacro20933 Vaccinium macrocarpon HOM05D001925 ORTHO05D004257 1.7e-64 250.4 308 48.7
CANSAT21G1319 Cannabis sativa HOM05D001925 ORTHO05D004257 2.7e-62 243.0 292 47.9
Thecc.01G357700 Theobroma cacao HOM05D001925 ORTHO05D004257 2.3e-61 240.0 310 46.5
Sabra02G0127500 Salix brachista HOM05D001925 ORTHO05D004257 9.7e-60 234.6 287 47.7
VMungo1383G2450 Vigna mungo HOM05D001925 ORTHO05D004257 1.3e-59 234.2 305 46.9
Ciclev10021244m.g Citrus clementina HOM05D001925 ORTHO05D004257 6.3e-59 231.9 310 43.9
CiPaw.02G032000 Carya illinoinensis HOM05D001925 ORTHO05D004257 1.1e-58 231.1 281 48.4
Cc02_g38170 Coffea canephora HOM05D001925 ORTHO05D004257 1.4e-58 230.7 304 45.1
RcHm_v2.0_Chr1g0355951 Rosa chinensis HOM05D001925 ORTHO05D004257 1.8e-58 230.3 292 47.6
Hma1.2p1_0780F.1_g216780 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 2.4e-58 229.9 328 44.2
Prupe.2G172100 Prunus persica HOM05D001925 ORTHO05D004257 2.4e-58 229.9 309 45.0
QL04p053608 Quercus lobata HOM05D001925 ORTHO05D004257 2.4e-58 229.9 261 51.0
Lj1g0025308 Lotus japonicus HOM05D001925 ORTHO05D004257 3.1e-58 229.6 311 45.3
Glyma.09G258600 Glycine max HOM05D001925 ORTHO05D004257 5.3e-58 228.8 312 44.9
arahy.Tifrunner.gnm1.ann1.E5DFEG Arachis hypogaea HOM05D001925 ORTHO05D004257 7.0e-58 228.4 305 45.6
Potri.002G160700 Populus trichocarpa HOM05D001925 ORTHO05D004257 7.0e-58 228.4 287 46.3
Glyma.18G234100 Glycine max HOM05D001925 ORTHO05D004257 1.2e-57 227.6 304 46.1
arahy.Tifrunner.gnm1.ann1.IGP217 Arachis hypogaea HOM05D001925 ORTHO05D004257 3.5e-57 226.1 305 45.6
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 5.9e-57 225.3 288 46.9
Gohir.A11G089800 Gossypium hirsutum HOM05D001925 ORTHO05D004257 5.9e-57 225.3 294 45.6
Duzib138G1880 Durio zibethinus HOM05D001925 ORTHO05D004257 7.7e-57 224.9 294 45.9
Manes.05G033200 Manihot esculenta HOM05D001925 ORTHO05D004257 7.7e-57 224.9 304 45.1
Lalb_Chr23g0275821 Lupinus albus HOM05D001925 ORTHO05D004257 1.3e-56 224.2 306 44.1
Gohir.D11G094100 Gossypium hirsutum HOM05D001925 ORTHO05D004257 1.7e-56 223.8 293 45.1
Manes.01G255700 Manihot esculenta HOM05D001925 ORTHO05D004257 1.7e-56 223.8 290 45.9
Phvul.008G061700 Phaseolus vulgaris HOM05D001925 ORTHO05D004257 1.7e-56 223.8 308 45.1
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 2.2e-56 223.4 266 48.5
Gorai.007G100500 Gossypium raimondii HOM05D001925 ORTHO05D004257 2.9e-56 223.0 293 44.7
Duzib133G0433 Durio zibethinus HOM05D001925 ORTHO05D004257 3.8e-56 222.6 309 44.0
FvH4_7g14520 Fragaria vesca HOM05D001925 ORTHO05D004257 5.0e-56 222.2 292 45.2
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 6.5e-56 221.9 292 45.2
FAN06G4809 Fragaria x ananassa HOM05D001925 ORTHO05D004257 6.5e-56 221.9 292 45.2
FAN10G1179 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.1e-55 221.1 292 45.5
FAN10G2559 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.1e-55 221.1 292 45.2
PGSC0003DMG400000175 Solanum tuberosum HOM05D001925 ORTHO05D004257 1.1e-55 221.1 303 43.9
Ca_07929_v3 Cicer arietinum L. HOM05D001925 ORTHO05D004257 1.5e-55 220.7 303 43.6
FAN06G3089 Fragaria x ananassa HOM05D001925 ORTHO05D004257 2.5e-55 219.9 292 44.9
Peaxi162Scf00020g00730 Petunia axillaris HOM05D001925 ORTHO05D004257 2.5e-55 219.9 306 43.8
TWI59G0730 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 2.5e-55 219.9 281 48.0
Potri.014G086000 Populus trichocarpa HOM05D001925 ORTHO05D004257 3.2e-55 219.5 292 45.5
Hma1.2p1_0780F.1_g216750 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 4.2e-55 219.2 322 42.9
Eucgr.D02304 Eucalyptus grandis HOM05D001925 ORTHO05D004257 7.2e-55 218.4 306 44.1
Medtr7g077860 Medicago truncatula HOM05D001925 ORTHO05D004257 9.4e-55 218.0 305 43.0
FAN03G0610 Fragaria x ananassa HOM05D001925 ORTHO05D004257 3.6e-54 216.1 296 45.9
Oeu031215.1 Olea europaea HOM05D001925 ORTHO05D004257 8.0e-54 214.9 309 44.0
PGR031G2850 Punica granatum HOM05D001925 ORTHO05D004257 8.0e-54 214.9 303 44.6
TPR.G37799 Trifolium pratense HOM05D001925 ORTHO05D004257 6.8e-53 211.8 303 42.2
PSO017G3573 Papaver somniferum HOM05D001925 ORTHO05D004257 1.5e-52 210.7 284 46.8
Sabra14G0062300 Salix brachista HOM05D001925 ORTHO05D004257 2.6e-52 209.9 292 44.5
MSTRG.14225 Avicennia marina HOM05D001925 ORTHO05D004257 4.4e-52 209.1 297 43.4
CsaV3_3G008850 Cucumis sativus L. HOM05D001925 ORTHO05D004257 9.8e-52 208.0 304 44.4
PSO063G1799 Papaver somniferum HOM05D001925 ORTHO05D004257 1.3e-51 207.6 286 46.5
MD01G1065100 Malus domestica HOM05D001925 ORTHO05D004257 1.7e-51 207.2 292 44.9
MD07G1135300 Malus domestica HOM05D001925 ORTHO05D004257 1.7e-51 207.2 289 45.0
ClCG05G001470 Citrullus lanatus HOM05D001925 ORTHO05D004257 2.2e-51 206.8 302 43.0
Oeu005388.3 Olea europaea HOM05D001925 ORTHO05D004257 3.7e-51 206.1 306 43.5
MELO3C006104.2 Cucumis melo HOM05D001925 ORTHO05D004257 4.8e-51 205.7 304 44.4
Migut.M00740 Erythranthe guttata HOM05D001925 ORTHO05D004257 8.3e-51 204.9 308 44.2
SalBow8G4919 Salvia bowleyana HOM05D001925 ORTHO05D004257 1.4e-50 204.1 313 41.9
Cpa.g.sc11.19 Carica papaya HOM05D001925 ORTHO05D004257 3.1e-50 203.0 283 46.3
Actinidia10041 Actinidia chinensis HOM05D001925 ORTHO05D004257 4.1e-50 202.6 266 45.9
Ah.05g180510 Amaranthus hybridus HOM05D001925 ORTHO05D004257 4.1e-50 202.6 312 41.0
Nitab4.5_0008206g0010 Nicotiana tabacum HOM05D001925 ORTHO05D004257 4.5e-49 199.1 292 42.8
CAN.G78.91 Capsicum annuum HOM05D001925 ORTHO05D004257 7.7e-49 198.4 305 40.0
Lj9A584T67 Lonicera japonica HOM05D001925 ORTHO05D004257 1.3e-48 197.6 283 44.9
Sopen01g038550 Solanum pennellii HOM05D001925 ORTHO05D004257 1.7e-48 197.2 294 41.5
DCAR_007445 Daucus carota HOM05D001925 ORTHO05D004257 5.0e-48 195.7 275 45.1
TAR636G0324 Trochodendron aralioides HOM05D001925 ORTHO05D004257 5.0e-48 195.7 297 43.8
Nitab4.5_0000386g0060 Nicotiana tabacum HOM05D001925 ORTHO05D004257 1.1e-47 194.5 292 42.5
GSVIVG01026948001 Vitis vinifera HOM05D001925 ORTHO05D004257 1.9e-47 193.7 295 41.7
Rhsim07G0013800 Rhododendron simsii HOM05D001925 ORTHO05D004257 5.5e-47 192.2 283 43.5
Sed0006621 Sechium edule HOM05D001925 ORTHO05D004257 5.5e-47 192.2 298 43.6
Psat3g108000 Pisum sativum HOM05D001925 ORTHO05D004257 7.2e-47 191.8 278 42.4
THA.LOC104825845 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 1.6e-46 190.7 306 39.5
ATR0680G064 Amborella trichopoda HOM05D001925 ORTHO05D004257 2.1e-46 190.3 307 40.4
CiPaw.01G062900 Carya illinoinensis HOM05D001925 ORTHO05D004257 3.6e-46 189.5 293 40.6
Sp6g00430 Schrenkiella parvula HOM05D001925 ORTHO05D004257 1.4e-45 187.6 298 38.9
Sed0020685 Sechium edule HOM05D001925 ORTHO05D004257 1.4e-45 187.6 285 43.5
Thhalv10029186m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 2.3e-45 186.8 309 39.2
Peaxi162Scf00008g02423 Petunia axillaris HOM05D001925 ORTHO05D004257 5.2e-45 185.7 289 40.8
Nitab4.5_0000583g0190 Nicotiana tabacum HOM05D001925 ORTHO05D004257 8.9e-45 184.9 298 42.6
PGR042G2528 Punica granatum HOM05D001925 ORTHO05D004257 2.6e-44 183.3 311 41.8
Aa31LG5G590 Aethionema arabicum HOM05D001925 ORTHO05D004257 3.4e-44 183.0 306 37.6
AUR62022581 Chenopodium quinoa HOM05D001925 ORTHO05D004257 4.4e-44 182.6 267 42.3
Nitab4.5_0006018g0030 Nicotiana tabacum HOM05D001925 ORTHO05D004257 9.8e-44 181.4 299 41.8
DCAR_025195 Daucus carota HOM05D001925 ORTHO05D004257 1.3e-43 181.0 278 39.2
Sc26g0000880 Simmondsia chinensis HOM05D001925 ORTHO05D004257 3.7e-43 179.5 281 39.5
THA.LOC104817300 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 8.3e-43 178.3 284 39.8
AUR62004372 Chenopodium quinoa HOM05D001925 ORTHO05D004257 3.2e-42 176.4 260 43.5
Hund27265 Selenicereus undatus HOM05D001925 ORTHO05D004257 7.0e-42 175.3 277 41.9
EL10Ac1g00401 Beta vulgaris HOM05D001925 ORTHO05D004257 1.2e-41 174.5 265 40.8
arahy.Tifrunner.gnm1.ann1.2X3TQS Arachis hypogaea HOM05D001925 ORTHO05D004257 3.5e-41 172.9 301 39.5
CDE08G0634 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 1.7e-40 170.6 303 36.6
AL4G45210 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 5.0e-40 169.1 295 37.6
ECA236G3632 Erigeron canadensis HOM05D001925 ORTHO05D004257 8.6e-40 168.3 302 39.1
CAN.G116.9 Capsicum annuum HOM05D001925 ORTHO05D004257 1.1e-39 167.9 307 37.8
AL6G53090 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 1.5e-39 167.5 304 37.2
Carub.0004s2868 Capsella rubella HOM05D001925 ORTHO05D004257 2.5e-39 166.8 291 37.5
SalBow3G4075 Salvia bowleyana HOM05D001925 ORTHO05D004257 7.3e-39 165.2 295 39.7
Sopen10g006250 Solanum pennellii HOM05D001925 ORTHO05D004257 7.3e-39 165.2 304 37.2
AT2G45980 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 1.2e-38 164.5 283 39.6
MBI17_g42624_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 2.1e-38 163.7 209 45.0
CARHR248450 Cardamine hirsuta HOM05D001925 ORTHO05D004257 6.1e-38 162.2 298 35.9
Rhsim01G0159000 Rhododendron simsii HOM05D001925 ORTHO05D004257 6.1e-38 162.2 272 41.9
Solyc10g012420.3 Solanum lycopersicum HOM05D001925 ORTHO05D004257 8.0e-38 161.8 304 37.5
THA.LOC104817027 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 8.0e-38 161.8 261 37.9
unitig_749.g13536 Utricularia gibba HOM05D001925 ORTHO05D004257 2.3e-37 160.2 293 37.2
Eucgr.E00120 Eucalyptus grandis HOM05D001925 ORTHO05D004257 3.1e-37 159.8 264 41.7
Thhalv10001583m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 4.0e-37 159.5 297 35.7
Aa31LG1G27390 Aethionema arabicum HOM05D001925 ORTHO05D004257 5.2e-37 159.1 287 37.3
CARHR141250 Cardamine hirsuta HOM05D001925 ORTHO05D004257 5.2e-37 159.1 296 37.8
Sp4g28050 Schrenkiella parvula HOM05D001925 ORTHO05D004257 6.8e-37 158.7 283 38.2
HanXRQChr13g0426611 Helianthus annuus HOM05D001925 ORTHO05D004257 8.9e-37 158.3 264 38.6
AT4G00355 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 2.6e-36 156.8 292 37.3
Carub.0006s3688 Capsella rubella HOM05D001925 ORTHO05D004257 3.4e-36 156.4 297 36.4
Lj6A572T61 Lonicera japonica HOM05D001925 ORTHO05D004257 1.3e-35 154.5 234 38.9
PGSC0003DMG400006504 Solanum tuberosum HOM05D001925 ORTHO05D004257 4.9e-35 152.5 274 39.4
A05p05970 Brassica napus HOM05D001925 ORTHO05D004257 1.1e-34 151.4 289 34.9
BraA05t19560Z Brassica rapa HOM05D001925 ORTHO05D004257 1.4e-34 151.0 289 34.9
Oeu061351.3 Olea europaea HOM05D001925 ORTHO05D004257 7.0e-34 148.7 261 36.4
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 2.7e-33 146.7 297 37.4
CDE05G2831 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 1.7e-32 144.1 254 36.6
C04p06900 Brassica napus HOM05D001925 ORTHO05D004257 2.3e-32 143.7 292 33.6
BolC4t22311H Brassica oleracea HOM05D001925 ORTHO05D004257 2.3e-32 143.7 292 33.6
THA.LOC104802035 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 6.6e-32 142.1 292 34.9
Sc23g0002810 Simmondsia chinensis HOM05D001925 ORTHO05D004257 7.3e-31 138.7 263 38.4
HPP92_025783 Vanilla planifolia HOM05D001925 ORTHO05D004257 1.6e-30 137.5 286 34.6
C04p71970 Brassica napus HOM05D001925 ORTHO05D004257 6.2e-30 135.6 293 33.8
Medtr2g027720 Medicago truncatula HOM05D001925 ORTHO05D004257 6.8e-29 132.1 239 40.6
Lsat_1_v5_gn_7_4301 Lactuca sativa HOM05D001925 ORTHO05D004257 1.2e-28 131.3 288 33.0
HPP92_014720 Vanilla planifolia HOM05D001925 ORTHO05D004257 1.5e-28 131.0 297 32.7
BcaB01g02169 Brassica carinata HOM05D001925 ORTHO05D004257 3.4e-28 129.8 294 33.0
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 5.8e-28 129.0 175 44.6
Migut.B01767 Erythranthe guttata HOM05D001925 ORTHO05D004257 9.8e-28 128.3 276 36.2
A04p34180 Brassica napus HOM05D001925 ORTHO05D004257 1.4e-26 124.4 294 32.7
BraA04t18879Z Brassica rapa HOM05D001925 ORTHO05D004257 1.4e-26 124.4 294 32.7
SGA_v2.0_scaffold55G19707 Striga asiatica HOM05D001925 ORTHO05D004257 4.1e-26 122.9 265 33.6
Lalb_Chr11g0072911 Lupinus albus HOM05D001925 ORTHO05D004257 5.4e-26 122.5 289 34.9
unitig_8.g3798 Utricularia gibba HOM05D001925 ORTHO05D004257 5.4e-26 122.5 294 33.3
Os04g0165300 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 1.0e-24 118.2 286 35.0
Zm00001eb318800 Zea mays HOM05D001925 ORTHO05D004257 1.3e-24 117.9 262 35.9
C03p39260 Brassica napus HOM05D001925 ORTHO05D004257 3.9e-24 116.3 292 30.5
BcaC01g06884 Brassica carinata HOM05D001925 ORTHO05D004257 5.1e-24 115.9 292 31.2
BolC3t16197H Brassica oleracea HOM05D001925 ORTHO05D004257 4.3e-23 112.8 292 30.5
Zm00001eb103050 Zea mays HOM05D001925 ORTHO05D004257 4.3e-23 112.8 266 35.3
Os02g0821900 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 1.6e-22 110.9 291 30.6
A03p32220 Brassica napus HOM05D001925 ORTHO05D004257 1.4e-21 107.8 297 31.0
BraA03t12392Z Brassica rapa HOM05D001925 ORTHO05D004257 1.4e-21 107.8 297 31.0
HanXRQChr04g0121161 Helianthus annuus HOM05D001925 ORTHO05D004257 3.1e-21 106.7 239 33.9
BolC4t28695H Brassica oleracea HOM05D001925 ORTHO05D004257 4.0e-21 106.3 298 29.2
MBI17_g35262_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 5.2e-21 105.9 106 51.9
SEGI_07880 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 8.6e-16 88.6 340 26.5
Zm00001eb305930 Zea mays HOM05D001925 ORTHO05D004257 1.9e-15 87.4 281 27.0
Zm00001eb191080 Zea mays HOM05D001925 ORTHO05D004257 9.6e-15 85.1 281 27.4
SGA_v2.0_scaffold4G02300 Striga asiatica HOM05D001925 ORTHO05D004257 2.8e-14 83.6 243 31.3
SGA_v2.0_scaffold95G28831 Striga asiatica HOM05D001925 ORTHO05D004257 2.0e-12 77.4 243 29.6
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 2.6e-12 77.0 74 47.3
Os07g0418200 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 1.9e-10 70.9 278 26.6
Zm00001eb415260 Zea mays HOM05D001925 ORTHO05D004257 7.8e-09 65.5 223 26.9
Lj6P578T28 Lonicera japonica HOM05D001925 ORTHO05D004257 3.9e-08 63.2 147 31.3
Zm00001eb087910 Zea mays HOM05D001925 ORTHO05D004257 3.9e-08 63.2 117 32.5
Lj7P510T18 Lonicera japonica HOM05D001925 ORTHO05D004257 1.1e-07 61.6 123 33.3
PSO782G3581 Papaver somniferum HOM05D001925 ORTHO05D302086 6.2e-06 55.8 30 86.7
SEGI_37364 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 6.2e-06 55.8 201 25.9
SMO364G0089 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 8.1e-06 55.5 72 41.7


User provided reference genes

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