Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G2599 Papaver somniferum HOM05D003932 ORTHO05D004546 6.5e-100 367.5 195 100.0
PSO478G2301 Papaver somniferum HOM05D003932 ORTHO05D004546 1.5e-64 250.0 139 95.0
PSO478G3215 Papaver somniferum HOM05D003932 ORTHO05D004546 2.2e-23 113.2 103 53.4
PSO782G0460 Papaver somniferum HOM05D003932 ORTHO05D004546 2.9e-23 112.8 135 49.6
TWI59G0559 Tripterygium wilfordii HOM05D003932 ORTHO05D004546 7.1e-22 108.2 121 51.2
Lsat_1_v5_gn_7_5540 Lactuca sativa HOM05D003932 ORTHO05D004546 1.2e-21 107.5 85 64.7
Medtr8g032450 Medicago truncatula HOM05D003932 ORTHO05D004546 1.2e-21 107.5 151 40.4
Medtr8g433000 Medicago truncatula HOM05D003932 ORTHO05D004546 1.2e-21 107.5 151 40.4
Potri.002G155500 Populus trichocarpa HOM05D003932 ORTHO05D004546 2.1e-21 106.7 126 49.2
TPR.G9818 Trifolium pratense HOM05D003932 ORTHO05D004546 2.1e-21 106.7 149 40.3
Atru.chr5.428 Acer truncatum HOM05D003932 ORTHO05D004546 1.0e-20 104.4 102 49.0
Atru.chr5.430 Acer truncatum HOM05D003932 ORTHO05D004546 1.3e-20 104.0 92 54.3
Glyma.03G015500 Glycine max HOM05D003932 ORTHO05D004546 2.3e-20 103.2 150 41.3
TWI14G0637 Tripterygium wilfordii HOM05D003932 ORTHO05D004546 2.3e-20 103.2 80 63.8
GSVIVG01027494001 Vitis vinifera HOM05D003932 ORTHO05D004546 2.3e-20 103.2 133 42.9
GSVIVG01027495001 Vitis vinifera HOM05D003932 ORTHO05D004546 2.3e-20 103.2 91 54.9
Atru.chr5.429 Acer truncatum HOM05D003932 ORTHO05D004546 3.9e-20 102.4 92 53.3
Cfa004206 Carpinus fangiana HOM05D003932 ORTHO05D004546 6.7e-20 101.7 99 53.5
CAN.G170.13 Capsicum annuum HOM05D003932 ORTHO05D004546 1.1e-19 100.9 98 48.0
Lj3g0012135 Lotus japonicus HOM05D003932 ORTHO05D004546 1.1e-19 100.9 146 41.8
Lsat_1_v5_gn_7_5520 Lactuca sativa HOM05D003932 ORTHO05D004546 1.5e-19 100.5 73 67.1
Lj1g0003765 Lotus japonicus HOM05D003932 ORTHO05D004546 1.5e-19 100.5 103 45.6
MD01G1049100 Malus domestica HOM05D003932 ORTHO05D004546 1.5e-19 100.5 100 52.0
Nitab4.5_0015647g0010 Nicotiana tabacum HOM05D003932 ORTHO05D004546 1.5e-19 100.5 138 42.8
Sopen01g037330 Solanum pennellii HOM05D003932 ORTHO05D004546 1.9e-19 100.1 129 44.2
Glyma.07G075500 Glycine max HOM05D003932 ORTHO05D004546 2.5e-19 99.8 162 38.3
Actinidia33434 Actinidia chinensis HOM05D003932 ORTHO05D004546 3.3e-19 99.4 94 55.3
MSTRG.28209 Avicennia marina HOM05D003932 ORTHO05D004546 3.3e-19 99.4 88 51.1
Dinv32437 Davidia involucrata HOM05D003932 ORTHO05D004546 3.3e-19 99.4 92 48.9
Sabra14G0057100 Salix brachista HOM05D003932 ORTHO05D004546 3.3e-19 99.4 88 55.7
Dinv32438 Davidia involucrata HOM05D003932 ORTHO05D004546 5.6e-19 98.6 115 41.7
Hma1.2p1_0001F.1_g001770 Hydrangea macrophylla HOM05D003932 ORTHO05D004546 5.6e-19 98.6 127 46.5
Atru.chr5.432 Acer truncatum HOM05D003932 ORTHO05D004546 7.4e-19 98.2 90 51.1
EL10Ac1g00516 Beta vulgaris HOM05D003932 ORTHO05D004546 7.4e-19 98.2 91 56.0
COL.COLO4_12605 Corchorus olitorius HOM05D003932 ORTHO05D004546 7.4e-19 98.2 107 47.7
Migut.N01424 Erythranthe guttata HOM05D003932 ORTHO05D004546 7.4e-19 98.2 96 52.1
MD07G1126000 Malus domestica HOM05D003932 ORTHO05D004546 7.4e-19 98.2 87 54.0
RcHm_v2.0_Chr1g0352831 Rosa chinensis HOM05D003932 ORTHO05D004546 7.4e-19 98.2 99 51.5
arahy.Tifrunner.gnm1.ann1.67TC14 Arachis hypogaea HOM05D003932 ORTHO05D004546 9.6e-19 97.8 89 48.3
arahy.Tifrunner.gnm1.ann1.UY84ZS Arachis hypogaea HOM05D003932 ORTHO05D004546 9.6e-19 97.8 103 45.6
ECA236G1648 Erigeron canadensis HOM05D003932 ORTHO05D004546 9.6e-19 97.8 85 55.3
ECA236G4160 Erigeron canadensis HOM05D003932 ORTHO05D004546 9.6e-19 97.8 74 64.9
Manes.05G038600 Manihot esculenta HOM05D003932 ORTHO05D004546 9.6e-19 97.8 83 59.0
Psat4g153520 Pisum sativum HOM05D003932 ORTHO05D004546 9.6e-19 97.8 131 42.7
Solyc01g091560.2 Solanum lycopersicum HOM05D003932 ORTHO05D004546 9.6e-19 97.8 130 43.1
Ah.02g122980 Amaranthus hybridus HOM05D003932 ORTHO05D004546 1.3e-18 97.4 88 53.4
Gohir.A11G086400 Gossypium hirsutum HOM05D003932 ORTHO05D004546 1.3e-18 97.4 139 40.3
SalBow5G0579 Salvia bowleyana HOM05D003932 ORTHO05D004546 1.3e-18 97.4 88 52.3
Cc00_g12140 Coffea canephora HOM05D003932 ORTHO05D004546 1.6e-18 97.1 93 52.7
Gohir.D11G090600 Gossypium hirsutum HOM05D003932 ORTHO05D004546 1.6e-18 97.1 139 40.3
Lj9A578T66 Lonicera japonica HOM05D003932 ORTHO05D004546 1.6e-18 97.1 120 42.5
Aqoxy7G00392 Aquilegia oxysepala HOM05D003932 ORTHO05D004546 2.1e-18 96.7 111 47.7
GSVIVG01027496001 Vitis vinifera HOM05D003932 ORTHO05D004546 2.1e-18 96.7 116 45.7
arahy.Tifrunner.gnm1.ann1.BEZL7V Arachis hypogaea HOM05D003932 ORTHO05D004546 2.8e-18 96.3 89 47.2
Cfa004205 Carpinus fangiana HOM05D003932 ORTHO05D004546 3.7e-18 95.9 131 41.2
Potri.014G078900 Populus trichocarpa HOM05D003932 ORTHO05D004546 3.7e-18 95.9 90 54.4
QL08p050127 Quercus lobata HOM05D003932 ORTHO05D004546 3.7e-18 95.9 135 42.2
Solyc01g091550.3 Solanum lycopersicum HOM05D003932 ORTHO05D004546 3.7e-18 95.9 98 48.0
PGSC0003DMG400027784 Solanum tuberosum HOM05D003932 ORTHO05D004546 3.7e-18 95.9 98 46.9
Oeu053298.1 Olea europaea HOM05D003932 ORTHO05D004546 4.8e-18 95.5 141 44.0
Psat4g153440 Pisum sativum HOM05D003932 ORTHO05D004546 4.8e-18 95.5 170 35.9
Haze_15203 Corylus avellana HOM05D003932 ORTHO05D004546 6.2e-18 95.1 89 51.7
Duzib133G0425 Durio zibethinus HOM05D003932 ORTHO05D004546 6.2e-18 95.1 141 40.4
Lalb_Chr19g0127151 Lupinus albus HOM05D003932 ORTHO05D004546 6.2e-18 95.1 132 44.7
Psat4g153400 Pisum sativum HOM05D003932 ORTHO05D004546 6.2e-18 95.1 169 35.5
RcHm_v2.0_Chr1g0352841 Rosa chinensis HOM05D003932 ORTHO05D004546 8.1e-18 94.7 105 45.7
MSTRG.28210 Avicennia marina HOM05D003932 ORTHO05D004546 1.1e-17 94.4 88 50.0
Gorai.007G096600 Gossypium raimondii HOM05D003932 ORTHO05D004546 1.1e-17 94.4 139 39.6
Sc23g0003150 Simmondsia chinensis HOM05D003932 ORTHO05D004546 1.1e-17 94.4 128 43.8
Sopen01g037320 Solanum pennellii HOM05D003932 ORTHO05D004546 1.1e-17 94.4 98 46.9
Eucgr.E00193 Eucalyptus grandis HOM05D003932 ORTHO05D004546 1.4e-17 94.0 114 43.0
Phvul.008G073300 Phaseolus vulgaris HOM05D003932 ORTHO05D004546 1.4e-17 94.0 131 42.0
Phvul.010G093700 Phaseolus vulgaris HOM05D003932 ORTHO05D004546 1.4e-17 94.0 108 43.5
SalBow5G4627 Salvia bowleyana HOM05D003932 ORTHO05D004546 1.4e-17 94.0 88 51.1
PGSC0003DMG400027783 Solanum tuberosum HOM05D003932 ORTHO05D004546 1.4e-17 94.0 130 41.5
CANSAT56G2307 Cannabis sativa HOM05D003932 ORTHO05D004546 1.8e-17 93.6 161 37.9
Prupe.2G158100 Prunus persica HOM05D003932 ORTHO05D004546 1.8e-17 93.6 123 43.9
arahy.Tifrunner.gnm1.ann1.MUI9WD Arachis hypogaea HOM05D003932 ORTHO05D004546 2.4e-17 93.2 143 37.8
CiPaw.02G026900 Carya illinoinensis HOM05D003932 ORTHO05D004546 2.4e-17 93.2 103 47.6
Nn1g01410 Nelumbo nucifera HOM05D003932 ORTHO05D004546 2.4e-17 93.2 92 47.8
Peaxi162Scf00021g01219 Petunia axillaris HOM05D003932 ORTHO05D004546 2.4e-17 93.2 119 41.2
QL08p050082 Quercus lobata HOM05D003932 ORTHO05D004546 2.4e-17 93.2 138 42.8
Ca_25783_v3 Cicer arietinum L. HOM05D003932 ORTHO05D004546 3.1e-17 92.8 168 35.1
Hund16950 Selenicereus undatus HOM05D003932 ORTHO05D004546 3.1e-17 92.8 96 49.0
arahy.Tifrunner.gnm1.ann1.VZ643L Arachis hypogaea HOM05D003932 ORTHO05D004546 4.0e-17 92.4 161 36.0
Cpa.g.sc18.210 Carica papaya HOM05D003932 ORTHO05D004546 4.0e-17 92.4 156 39.7
AUR62022756 Chenopodium quinoa HOM05D003932 ORTHO05D004546 4.0e-17 92.4 95 49.5
Lalb_Chr10g0097321 Lupinus albus HOM05D003932 ORTHO05D004546 4.0e-17 92.4 163 34.4
QL08p050106 Quercus lobata HOM05D003932 ORTHO05D004546 4.0e-17 92.4 132 40.9
ClCG05G001750 Citrullus lanatus HOM05D003932 ORTHO05D004546 5.3e-17 92.0 99 48.5
Ciclev10022587m.g Citrus clementina HOM05D003932 ORTHO05D004546 5.3e-17 92.0 103 42.7
unitig_22.g6806 Utricularia gibba HOM05D003932 ORTHO05D004546 5.3e-17 92.0 82 52.4
Manes.05G038300 Manihot esculenta HOM05D003932 ORTHO05D004546 6.9e-17 91.7 132 41.7
Thecc.01G365900 Theobroma cacao HOM05D003932 ORTHO05D004546 6.9e-17 91.7 136 41.2
VMungo1383G1115 Vigna mungo HOM05D003932 ORTHO05D004546 6.9e-17 91.7 106 41.5
Haze_15204 Corylus avellana HOM05D003932 ORTHO05D004546 1.2e-16 90.9 171 38.6
Cfa004207 Carpinus fangiana HOM05D003932 ORTHO05D004546 2.0e-16 90.1 113 45.1
Manes.05G038500 Manihot esculenta HOM05D003932 ORTHO05D004546 2.0e-16 90.1 80 53.8
QL08p050077 Quercus lobata HOM05D003932 ORTHO05D004546 2.0e-16 90.1 123 41.5
Solyc01g091570.3 Solanum lycopersicum HOM05D003932 ORTHO05D004546 2.0e-16 90.1 127 41.7
MBI04_g04735_MAGBIO Magnolia biondii HOM05D003932 ORTHO05D004546 2.6e-16 89.7 130 41.5
Sopen01g037340 Solanum pennellii HOM05D003932 ORTHO05D004546 2.6e-16 89.7 127 41.7
CiPaw.02G027200 Carya illinoinensis HOM05D003932 ORTHO05D004546 3.4e-16 89.4 79 53.2
FvH4_7g13460 Fragaria vesca HOM05D003932 ORTHO05D004546 3.4e-16 89.4 159 39.0
FAN06G0832 Fragaria x ananassa HOM05D003932 ORTHO05D004546 3.4e-16 89.4 132 40.9
FAN06G3956 Fragaria x ananassa HOM05D003932 ORTHO05D004546 3.4e-16 89.4 132 40.9
FAN03G2927 Fragaria x ananassa HOM05D003932 ORTHO05D004546 4.5e-16 89.0 132 42.4
Peaxi162Scf00021g01218 Petunia axillaris HOM05D003932 ORTHO05D004546 4.5e-16 89.0 88 48.9
SalBow5G2663 Salvia bowleyana HOM05D003932 ORTHO05D004546 4.5e-16 89.0 91 47.3
SalBow5G3861 Salvia bowleyana HOM05D003932 ORTHO05D004546 4.5e-16 89.0 91 47.3
Sed0002580 Sechium edule HOM05D003932 ORTHO05D004546 4.5e-16 89.0 115 43.5
Nitab4.5_0006421g0030 Nicotiana tabacum HOM05D003932 ORTHO05D004546 5.8e-16 88.6 166 36.1
FAN10G0548 Fragaria x ananassa HOM05D003932 ORTHO05D004546 7.6e-16 88.2 132 41.7
PGSC0003DMG400027782 Solanum tuberosum HOM05D003932 ORTHO05D004546 7.6e-16 88.2 127 40.2
HPP92_025613 Vanilla planifolia HOM05D003932 ORTHO05D004546 7.6e-16 88.2 116 42.2
FAN01G0068 Fragaria x ananassa HOM05D003932 ORTHO05D004546 9.9e-16 87.8 132 40.9
FAN06G4428 Fragaria x ananassa HOM05D003932 ORTHO05D004546 9.9e-16 87.8 132 40.9
VMungo0331G1015 Vigna mungo HOM05D003932 ORTHO05D004546 1.3e-15 87.4 129 38.0
FvH4_7g13461 Fragaria vesca HOM05D003932 ORTHO05D004546 3.8e-15 85.9 132 40.2
FAN10G1165 Fragaria x ananassa HOM05D003932 ORTHO05D004546 3.8e-15 85.9 164 38.4
Glyma.07G075400 Glycine max HOM05D003932 ORTHO05D004546 3.8e-15 85.9 168 36.9
arahy.Tifrunner.gnm1.ann1.LBI1HC Arachis hypogaea HOM05D003932 ORTHO05D004546 4.9e-15 85.5 90 46.7
DCAR_025147 Daucus carota HOM05D003932 ORTHO05D004546 4.9e-15 85.5 162 34.6
arahy.Tifrunner.gnm1.ann1.NCU55Y Arachis hypogaea HOM05D003932 ORTHO05D004546 6.4e-15 85.1 90 46.7
DCAR_020430 Daucus carota HOM05D003932 ORTHO05D004546 8.4e-15 84.7 96 47.9
FAN01G1053 Fragaria x ananassa HOM05D003932 ORTHO05D004546 8.4e-15 84.7 132 40.2
Manes.05G038400 Manihot esculenta HOM05D003932 ORTHO05D004546 8.4e-15 84.7 125 36.8
MELO3C006135.2 Cucumis melo HOM05D003932 ORTHO05D004546 1.1e-14 84.3 115 43.5
Glyma.18G224900 Glycine max HOM05D003932 ORTHO05D004546 1.1e-14 84.3 131 37.4
AUR62022757 Chenopodium quinoa HOM05D003932 ORTHO05D004546 1.4e-14 84.0 93 47.3
Gohir.A08G129700 Gossypium hirsutum HOM05D003932 ORTHO05D004546 3.2e-14 82.8 90 46.7
Sed0026606 Sechium edule HOM05D003932 ORTHO05D004546 7.1e-14 81.6 107 44.9
Gorai.004G156800 Gossypium raimondii HOM05D003932 ORTHO05D004546 9.3e-14 81.3 142 37.3
Gohir.D08G151100 Gossypium hirsutum HOM05D003932 ORTHO05D004546 1.6e-13 80.5 142 37.3
SGA_v2.0_scaffold11G05654 Striga asiatica HOM05D003932 ORTHO05D004546 2.1e-13 80.1 139 34.5
AUR62004306 Chenopodium quinoa HOM05D003932 ORTHO05D004546 3.5e-13 79.3 93 46.2
CsaV3_3G009140 Cucumis sativus L. HOM05D003932 ORTHO05D004546 6.0e-13 78.6 161 36.6
CDE07G1632 Ceratophyllum demersum HOM05D003932 ORTHO05D004546 1.0e-12 77.8 89 42.7
BolC4t24695H Brassica oleracea HOM05D003932 ORTHO05D004546 3.9e-12 75.9 142 40.8
Sp5g02170 Schrenkiella parvula HOM05D003932 ORTHO05D004546 5.1e-12 75.5 98 41.8
BcaC02g10211 Brassica carinata HOM05D003932 ORTHO05D004546 6.7e-12 75.1 142 40.8
C04p31500 Brassica napus HOM05D003932 ORTHO05D004546 6.7e-12 75.1 142 40.8
Zm00001eb306670 Zea mays HOM05D003932 ORTHO05D004546 6.7e-12 75.1 116 37.9
TAR629G2445 Trochodendron aralioides HOM05D003932 ORTHO05D004546 1.1e-11 74.3 54 64.8
A04p01220 Brassica napus HOM05D003932 ORTHO05D004546 1.5e-11 73.9 142 40.1
Aa31LG10G15280 Aethionema arabicum HOM05D003932 ORTHO05D004546 1.9e-11 73.6 161 33.5
CSS0035798 Camellia sinensis var. sinensis HOM05D003932 ORTHO05D004546 1.9e-11 73.6 78 50.0
BraA04t15840Z Brassica rapa HOM05D003932 ORTHO05D004546 2.5e-11 73.2 142 40.1
Sed0003987 Sechium edule HOM05D003932 ORTHO05D004546 3.3e-11 72.8 167 35.9
SEGI_37049 Sequoiadendron giganteum HOM05D003932 ORTHO05D004546 5.6e-11 72.0 98 39.8
Thhalv10006257m.g Eutrema salsugineum HOM05D003932 ORTHO05D004546 7.4e-11 71.6 75 46.7
Carub.0005s2787 Capsella rubella HOM05D003932 ORTHO05D004546 9.6e-11 71.2 69 50.7
AT3G61200 Arabidopsis thaliana HOM05D003932 ORTHO05D004546 2.8e-10 69.7 138 36.2
QL08p050131 Quercus lobata HOM05D003932 ORTHO05D004546 3.7e-10 69.3 47 68.1
Os07g0463500 Oryza sativa ssp. japonica HOM05D003932 ORTHO05D004546 4.8e-10 68.9 72 48.6
SEGI_14275 Sequoiadendron giganteum HOM05D003932 ORTHO05D004546 4.8e-10 68.9 114 36.8
Ca_07852_v3 Cicer arietinum L. HOM05D003932 ORTHO05D004546 6.2e-10 68.6 84 41.7
AL5G43470 Arabidopsis lyrata HOM05D003932 ORTHO05D004546 8.2e-10 68.2 141 36.2
CARHR171510 Cardamine hirsuta HOM05D003932 ORTHO05D004546 8.2e-10 68.2 134 36.6
Os07g0462700 Oryza sativa ssp. japonica HOM05D003932 ORTHO05D004546 1.4e-09 67.4 72 48.6
RcHm_v2.0_Chr5g0032131 Rosa chinensis HOM05D003932 ORTHO05D004546 1.8e-09 67.0 58 55.2
SalBow5G2036 Salvia bowleyana HOM05D003932 ORTHO05D004546 5.3e-09 65.5 97 36.1
Prupe.2G157800 Prunus persica HOM05D003932 ORTHO05D004546 2.6e-08 63.2 43 69.8
EL10Ac1g00517 Beta vulgaris HOM05D003932 ORTHO05D004546 2.2e-07 60.1 55 54.5
Sc16g0009830 Simmondsia chinensis HOM05D001332 ORTHO05D001894 2.2e-07 60.1 80 41.2
Ah.02g118260 Amaranthus hybridus HOM05D001332 ORTHO05D001894 6.5e-07 58.5 80 41.2
SalBow8G0886 Salvia bowleyana HOM05D021639 ORTHO05D001894 6.5e-07 58.5 79 39.2
SalBow8G0934 Salvia bowleyana HOM05D021639 ORTHO05D001894 6.5e-07 58.5 79 39.2
Migut.H02538 Erythranthe guttata HOM05D001332 ORTHO05D001894 1.9e-06 57.0 75 41.3
AUR62006976 Chenopodium quinoa HOM05D001332 ORTHO05D001894 2.5e-06 56.6 76 42.1
unitig_899.g14978 Utricularia gibba HOM05D000916 ORTHO05D008340 2.5e-06 56.6 79 38.0
MBI04_g04733_MAGBIO Magnolia biondii HOM05D003932 ORTHO05D004546 5.5e-06 55.5 46 58.7


User provided reference genes

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