Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G2464 Papaver somniferum HOM05D005910 ORTHO05D007088 9.2e-99 363.6 192 100.0
CANSAT64G0849 Cannabis sativa HOM05D005910 ORTHO05D007088 1.1e-78 297.0 191 82.7
AL3G23640 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 1.4e-78 296.6 197 79.7
Manes.09G037701 Manihot esculenta HOM05D005910 ORTHO05D007088 1.4e-78 296.6 188 81.4
RcHm_v2.0_Chr3g0479191 Rosa chinensis HOM05D005910 ORTHO05D007088 2.4e-78 295.8 190 82.1
Glyma.16G043900 Glycine max HOM05D005910 ORTHO05D007088 3.1e-78 295.4 192 79.2
Aqoxy7G00427 Aquilegia oxysepala HOM05D005910 ORTHO05D007088 4.0e-78 295.0 189 83.1
AT3G12030 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 4.0e-78 295.0 197 79.2
CARHR206550 Cardamine hirsuta HOM05D005910 ORTHO05D007088 6.9e-78 294.3 189 81.0
DCAR_019862 Daucus carota HOM05D005910 ORTHO05D007088 6.9e-78 294.3 195 81.5
Carub.0003s1137 Capsella rubella HOM05D005910 ORTHO05D007088 9.0e-78 293.9 197 79.2
ClCG10G017690 Citrullus lanatus HOM05D005910 ORTHO05D007088 9.0e-78 293.9 187 80.7
FAN02G0902 Fragaria x ananassa HOM05D005910 ORTHO05D007088 9.0e-78 293.9 191 81.7
Lalb_Chr22g0359441 Lupinus albus HOM05D005910 ORTHO05D007088 9.0e-78 293.9 192 80.2
FAN05G0623 Fragaria x ananassa HOM05D005910 ORTHO05D007088 1.5e-77 293.1 191 81.7
FAN14G5103 Fragaria x ananassa HOM05D005910 ORTHO05D007088 1.5e-77 293.1 191 81.7
CARHR086590 Cardamine hirsuta HOM05D005910 ORTHO05D007088 2.6e-77 292.4 197 78.7
Dinv16345 Davidia involucrata HOM05D005910 ORTHO05D007088 3.4e-77 292.0 195 80.0
FvH4_6g21840 Fragaria vesca HOM05D005910 ORTHO05D007088 3.4e-77 292.0 191 81.2
Hma1.2p1_0124F.1_g058350 Hydrangea macrophylla HOM05D005910 ORTHO05D007088 3.4e-77 292.0 195 80.5
VMungo1383G3424 Vigna mungo HOM05D005910 ORTHO05D007088 3.4e-77 292.0 192 79.7
AL6G16750 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 4.5e-77 291.6 189 79.9
BcaC09g48209 Brassica carinata HOM05D005910 ORTHO05D007088 4.5e-77 291.6 197 79.2
MELO3C009607.2 Cucumis melo HOM05D005910 ORTHO05D007088 4.5e-77 291.6 187 79.7
Phvul.001G097100 Phaseolus vulgaris HOM05D005910 ORTHO05D007088 4.5e-77 291.6 192 79.2
CSS0007798 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 5.8e-77 291.2 190 80.0
Carub.0006s0554 Capsella rubella HOM05D005910 ORTHO05D007088 5.8e-77 291.2 189 79.9
Ca_08246_v3 Cicer arietinum L. HOM05D005910 ORTHO05D007088 5.8e-77 291.2 192 79.7
Glyma.19G108300 Glycine max HOM05D005910 ORTHO05D007088 5.8e-77 291.2 192 79.7
Lj1g0011929 Lotus japonicus HOM05D005910 ORTHO05D007088 5.8e-77 291.2 192 80.2
Medtr7g085050 Medicago truncatula HOM05D005910 ORTHO05D007088 5.8e-77 291.2 192 79.7
Aa31LG3G5420 Aethionema arabicum HOM05D005910 ORTHO05D007088 7.6e-77 290.8 197 77.7
Psat3g091080 Pisum sativum HOM05D005910 ORTHO05D007088 7.6e-77 290.8 192 79.2
BolC1t05270H Brassica oleracea HOM05D005910 ORTHO05D007088 9.9e-77 290.4 197 79.2
Lalb_Chr14g0364291 Lupinus albus HOM05D005910 ORTHO05D007088 9.9e-77 290.4 192 79.2
THA.LOC104799285 Tarenaya hassleriana HOM05D005910 ORTHO05D007088 9.9e-77 290.4 189 80.4
TPR.G5912 Trifolium pratense HOM05D005910 ORTHO05D007088 9.9e-77 290.4 192 79.7
Atru.chr8.1156 Acer truncatum HOM05D005910 ORTHO05D007088 1.3e-76 290.0 195 79.0
AT5G06660 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 2.2e-76 289.3 189 79.9
CiPaw.09G028200 Carya illinoinensis HOM05D005910 ORTHO05D007088 2.2e-76 289.3 187 80.7
Thhalv10016091m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 2.9e-76 288.9 189 79.4
Thhalv10022159m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 3.8e-76 288.5 189 79.9
Sed0016712 Sechium edule HOM05D005910 ORTHO05D007088 3.8e-76 288.5 188 78.7
BcaB04g21099 Brassica carinata HOM05D005910 ORTHO05D007088 4.9e-76 288.1 198 77.8
MD12G1054500 Malus domestica HOM05D005910 ORTHO05D007088 4.9e-76 288.1 193 79.3
Sp6g36210 Schrenkiella parvula HOM05D005910 ORTHO05D007088 4.9e-76 288.1 189 79.4
TWI77G0716 Tripterygium wilfordii HOM05D005910 ORTHO05D007088 4.9e-76 288.1 190 78.9
TAR369G0766 Trochodendron aralioides HOM05D005910 ORTHO05D007088 4.9e-76 288.1 192 79.2
BraA01t04144Z Brassica rapa HOM05D005910 ORTHO05D007088 8.4e-76 287.3 197 78.7
Gohir.A09G128900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 8.4e-76 287.3 190 78.9
TAR623G1561 Trochodendron aralioides HOM05D005910 ORTHO05D007088 8.4e-76 287.3 192 80.2
Sp3g10260 Schrenkiella parvula HOM05D005910 ORTHO05D007088 1.1e-75 287.0 197 78.2
Lsat_1_v5_gn_2_56160 Lactuca sativa HOM05D005910 ORTHO05D007088 1.4e-75 286.6 194 79.9
COL.COLO4_29362 Corchorus olitorius HOM05D005910 ORTHO05D007088 1.9e-75 286.2 190 79.5
Gohir.D09G124900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 2.4e-75 285.8 190 78.9
Gorai.006G143800 Gossypium raimondii HOM05D005910 ORTHO05D007088 2.4e-75 285.8 190 78.9
CiPaw.10G025100 Carya illinoinensis HOM05D005910 ORTHO05D007088 3.2e-75 285.4 187 80.2
PGR142G2565 Punica granatum HOM05D005910 ORTHO05D007088 4.2e-75 285.0 190 80.0
Actinidia17287 Actinidia chinensis HOM05D005910 ORTHO05D007088 5.5e-75 284.6 194 77.8
Cpa.g.sc85.46 Carica papaya HOM05D005910 ORTHO05D007088 7.1e-75 284.3 190 77.9
Oeu057587.1 Olea europaea HOM05D005910 ORTHO05D007088 7.1e-75 284.3 195 78.5
Thecc.05G175100 Theobroma cacao HOM05D005910 ORTHO05D007088 9.3e-75 283.9 190 78.9
Solyc10g079000.1 Solanum lycopersicum HOM05D005910 ORTHO05D007088 1.2e-74 283.5 193 79.3
Sopen10g029620 Solanum pennellii HOM05D005910 ORTHO05D007088 1.2e-74 283.5 193 79.3
PGSC0003DMG400011451 Solanum tuberosum HOM05D005910 ORTHO05D007088 1.2e-74 283.5 193 79.3
Prupe.7G082200 Prunus persica HOM05D005910 ORTHO05D007088 1.6e-74 283.1 190 79.5
Actinidia38597 Actinidia chinensis HOM05D005910 ORTHO05D007088 2.7e-74 282.3 194 77.3
Duzib106G1486 Durio zibethinus HOM05D005910 ORTHO05D007088 2.7e-74 282.3 190 78.4
QL07p024560 Quercus lobata HOM05D005910 ORTHO05D007088 2.7e-74 282.3 196 77.0
GSVIVG01033465001 Vitis vinifera HOM05D005910 ORTHO05D007088 6.0e-74 281.2 192 76.6
Nitab4.5_0000009g0230 Nicotiana tabacum HOM05D005910 ORTHO05D007088 8.7e-73 277.3 193 76.2
CAN.G960.19 Capsicum annuum HOM05D005910 ORTHO05D007088 1.1e-72 276.9 193 75.6
Cc06_g15530 Coffea canephora HOM05D005910 ORTHO05D007088 1.5e-72 276.6 194 78.4
Manes.08G042400 Manihot esculenta HOM05D005910 ORTHO05D007088 1.5e-72 276.6 188 77.1
ATR0598G129 Amborella trichopoda HOM05D005910 ORTHO05D007088 2.5e-72 275.8 188 78.2
Peaxi162Scf00463g00044 Petunia axillaris HOM05D005910 ORTHO05D007088 2.5e-72 275.8 193 76.7
MSTRG.19925 Avicennia marina HOM05D005910 ORTHO05D007088 3.3e-72 275.4 190 76.3
Sc13g0002410 Simmondsia chinensis HOM05D005910 ORTHO05D007088 9.6e-72 273.9 189 76.2
CsaV3_3G038630 Cucumis sativus L. HOM05D005910 ORTHO05D007088 1.6e-71 273.1 171 81.3
Nitab4.5_0009361g0020 Nicotiana tabacum HOM05D005910 ORTHO05D007088 1.6e-71 273.1 193 75.1
SGA_v2.0_scaffold69G23042 Striga asiatica HOM05D005910 ORTHO05D007088 2.8e-71 272.3 198 74.7
AUR62015329 Chenopodium quinoa HOM05D005910 ORTHO05D007088 8.2e-71 270.8 188 75.5
AUR62012008 Chenopodium quinoa HOM05D005910 ORTHO05D007088 1.4e-70 270.0 188 75.5
Rhsim04G0093900 Rhododendron simsii HOM05D005910 ORTHO05D007088 1.8e-70 269.6 196 75.0
HPP92_021275 Vanilla planifolia HOM05D005910 ORTHO05D007088 1.8e-70 269.6 203 70.0
Rhsim04G0095300 Rhododendron simsii HOM05D005910 ORTHO05D007088 3.1e-70 268.9 196 75.0
unitig_26.g10040 Utricularia gibba HOM05D005910 ORTHO05D007088 4.0e-70 268.5 197 72.6
Migut.J01866 Erythranthe guttata HOM05D005910 ORTHO05D007088 9.0e-70 267.3 198 73.2
EL10Ac3g06882 Beta vulgaris HOM05D005910 ORTHO05D007088 3.4e-69 265.4 188 73.9
Potri.016G060300 Populus trichocarpa HOM05D005910 ORTHO05D007088 2.2e-68 262.7 188 72.9
HanXRQChr14g0438251 Helianthus annuus HOM05D005910 ORTHO05D007088 4.9e-68 261.5 194 73.7
Lsat_1_v5_gn_6_36581 Lactuca sativa HOM05D005910 ORTHO05D007088 3.2e-67 258.8 181 75.1
Pp3c21_11350 Physcomitrium patens HOM05D005910 ORTHO05D007088 1.2e-66 256.9 188 70.7
Haze_20022 Corylus avellana HOM05D005910 ORTHO05D007088 2.1e-66 256.1 188 73.4
Haze_20025 Corylus avellana HOM05D005910 ORTHO05D007088 2.1e-66 256.1 188 73.4
Mapoly0107s0023 Marchantia polymorpha HOM05D005910 ORTHO05D007088 4.6e-66 255.0 185 72.4
Sed0026900 Sechium edule HOM05D005910 ORTHO05D007088 4.6e-66 255.0 194 70.6
ECA238G3575 Erigeron canadensis HOM05D005910 ORTHO05D007088 7.9e-66 254.2 185 74.6
Zm00001eb215980 Zea mays HOM05D005910 ORTHO05D007088 7.9e-66 254.2 202 65.8
Zm00001eb055560 Zea mays HOM05D005910 ORTHO05D007088 3.9e-65 251.9 200 66.5
AagrBONN_evm.TU.Sc2ySwM_117.1513 Anthoceros agrestis HOM05D005910 ORTHO05D007088 8.7e-65 250.8 190 70.5
SHI31753 Sapria himalayana HOM05D005910 ORTHO05D007088 4.3e-64 248.4 189 68.8
Os03g0721400 Oryza sativa ssp. japonica HOM05D005910 ORTHO05D007088 7.4e-64 247.7 210 63.3
Cfa020141 Carpinus fangiana HOM05D005910 ORTHO05D007088 1.6e-63 246.5 188 71.3
vmacro22120 Vaccinium macrocarpon HOM05D005910 ORTHO05D007088 3.7e-63 245.4 175 76.0
HanXRQChr03g0075461 Helianthus annuus HOM05D005910 ORTHO05D007088 5.3e-62 241.5 193 68.9
SMO367G0437 Selaginella moellendorffii HOM05D005910 ORTHO05D007088 2.9e-60 235.7 184 66.3
CBR_g49549 Chara braunii HOM05D005910 ORTHO05D007088 4.2e-59 231.9 184 59.8
Ciclev10013918m.g Citrus clementina HOM05D005910 ORTHO05D007088 2.0e-53 213.0 129 83.7
Lj1P1133T16 Lonicera japonica HOM05D005910 ORTHO05D007088 2.0e-53 213.0 137 82.5
Sabra16G0063200 Salix brachista HOM05D005910 ORTHO05D007088 9.4e-51 204.1 135 77.0
Dinv24042 Davidia involucrata HOM05D005910 ORTHO05D007088 7.9e-50 201.1 196 62.8
SEGI_08450 Sequoiadendron giganteum HOM05D005910 ORTHO05D007088 2.3e-49 199.5 167 65.9
CSS0031188 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 3.3e-48 195.7 194 58.2
CSS0042896 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 3.6e-42 175.6 186 56.5
CSS0024230 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 1.4e-41 173.7 197 53.8
Actinidia38594 Actinidia chinensis HOM05D005910 ORTHO05D007088 1.8e-38 163.3 124 72.6
MD14G1053500 Malus domestica HOM05D005910 ORTHO05D007088 1.5e-35 153.7 115 73.0
DCAR_009688 Daucus carota HOM05D005910 ORTHO05D007088 1.2e-34 150.6 100 74.0
MD11G1118600 Malus domestica HOM05D005910 ORTHO05D007088 1.4e-33 147.1 122 66.4
Haze_26182 Corylus avellana HOM05D005910 ORTHO05D007088 2.6e-32 142.9 164 44.5
QL03p020127 Quercus lobata HOM05D005910 ORTHO05D007088 8.0e-26 121.3 92 69.6
MD03G1239200 Malus domestica HOM05D005910 ORTHO05D007088 2.3e-25 119.8 114 61.4
MD00G1019800 Malus domestica HOM05D005910 ORTHO05D007088 3.0e-25 119.4 97 63.9
QL07p006238 Quercus lobata HOM05D005910 ORTHO05D007088 4.4e-24 115.5 92 65.2
CDE06G1328 Ceratophyllum demersum HOM05D005910 ORTHO05D007088 6.3e-23 111.7 82 72.0
Glyma.07G000600 Glycine max HOM05D005910 ORTHO05D007088 2.1e-18 96.7 70 77.1
PRCOL_00005630 Prasinoderma coloniale HOM05D005910 ORTHO05D007088 2.8e-18 96.3 174 31.0
Sabra08G0162900 Salix brachista HOM05D003359 ORTHO05D007088 8.3e-15 84.7 45 82.2
Cre03.g182900 Chlamydomonas reinhardtii HOM05D005910 ORTHO05D007088 1.4e-14 84.0 160 33.1
AUR62043130 Chenopodium quinoa HOM05D005910 ORTHO05D007088 2.4e-14 83.2 74 63.5
HanXRQChr13g0398341 Helianthus annuus HOM05D005910 ORTHO05D007088 3.1e-09 66.2 40 75.0


User provided reference genes

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