Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 2.9e-275 951.4 543 100.0
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 5.4e-237 824.3 555 83.8
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 1.3e-52 211.8 162 69.8
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 1.3e-52 211.8 162 69.8
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.4e-51 208.4 709 30.9
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 1.8e-51 208.0 675 31.4
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 4.1e-51 206.8 162 68.5
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 1.3e-49 201.8 681 30.8
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 4.2e-48 196.8 601 34.8
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 4.2e-48 196.8 162 65.4
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 9.4e-48 195.7 549 32.1
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 2.1e-47 194.5 162 63.0
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 2.1e-47 194.5 461 36.0
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 2.7e-47 194.1 672 30.8
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 2.6e-45 187.6 605 31.1
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 3.4e-45 187.2 166 63.3
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 7.5e-45 186.0 634 31.2
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 1.7e-44 184.9 161 65.2
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 3.7e-44 183.7 740 29.1
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 8.3e-44 182.6 679 31.1
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 8.3e-44 182.6 633 32.9
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 3.1e-43 180.6 715 29.5
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 4.1e-43 180.3 433 35.1
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 1.6e-42 178.3 734 29.2
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 2.0e-42 177.9 465 32.7
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 3.5e-42 177.2 161 60.2
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 1.0e-41 175.6 160 61.9
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 1.0e-41 175.6 434 35.5
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 1.0e-41 175.6 639 28.8
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 1.3e-41 175.3 171 60.2
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 1.7e-41 174.9 161 59.6
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 1.7e-41 174.9 161 62.1
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 2.9e-41 174.1 441 34.9
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 2.5e-40 171.0 617 30.8
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 5.5e-40 169.9 160 61.2
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 7.2e-40 169.5 162 59.3
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 2.1e-39 167.9 669 28.4
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 2.7e-39 167.5 604 30.1
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 3.6e-39 167.2 161 59.6
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 4.7e-39 166.8 604 30.5
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 6.1e-39 166.4 160 60.0
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 1.8e-38 164.9 539 29.7
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 5.2e-38 163.3 160 60.6
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 5.2e-38 163.3 168 56.0
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 1.5e-37 161.8 162 58.0
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 1.5e-37 161.8 196 49.0
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 1.5e-37 161.8 646 30.0
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 1.5e-37 161.8 162 58.6
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 3.4e-37 160.6 717 29.8
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 5.7e-37 159.8 573 32.5
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 9.8e-37 159.1 660 29.4
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.7e-36 158.3 164 57.3
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 8.3e-36 156.0 631 29.3
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 5.4e-35 153.3 134 65.7
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 9.2e-35 152.5 673 28.1
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 9.2e-35 152.5 162 53.7
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 1.2e-34 152.1 245 42.9
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 1.6e-34 151.8 649 28.0
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 2.0e-34 151.4 442 31.7
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 3.5e-34 150.6 162 54.3
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 1.3e-33 148.7 162 53.1
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 5.0e-33 146.7 445 31.5
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 1.1e-32 145.6 610 29.3
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 1.1e-32 145.6 220 44.1
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 1.5e-32 145.2 785 27.0
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 1.9e-32 144.8 162 52.5
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 1.9e-32 144.8 448 29.0
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 5.6e-32 143.3 158 57.0
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 7.3e-32 142.9 163 52.1
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 2.1e-31 141.4 687 26.6
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 2.1e-31 141.4 606 29.4
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 2.8e-31 141.0 161 52.2
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 3.6e-31 140.6 114 66.7
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 3.6e-31 140.6 165 52.7
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 6.1e-31 139.8 513 29.4
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 8.0e-31 139.4 658 27.8
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 1.8e-30 138.3 726 27.0
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 1.8e-30 138.3 606 28.7
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 1.8e-30 138.3 165 50.3
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 4.0e-30 137.1 149 55.0
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 5.2e-30 136.7 164 53.7
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 1.2e-29 135.6 284 36.6
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 2.0e-29 134.8 594 27.6
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 2.6e-29 134.4 586 29.7
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 2.6e-29 134.4 170 51.2
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 7.5e-29 132.9 158 51.3
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.7e-28 131.7 164 51.2
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 1.7e-28 131.7 164 51.2
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 1.1e-27 129.0 162 48.1
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 1.1e-27 129.0 162 52.5
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 1.8e-27 128.3 164 50.6
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 1.8e-27 128.3 418 30.4
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 5.4e-27 126.7 166 50.0
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 9.2e-27 125.9 164 50.0
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 1.6e-26 125.2 153 50.3
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 2.7e-26 124.4 469 30.3
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 1.3e-25 122.1 162 46.9
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 2.3e-25 121.3 158 48.1
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 2.3e-25 121.3 515 28.0
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 5.0e-25 120.2 163 49.1
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 6.6e-25 119.8 437 28.6
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 8.6e-25 119.4 440 30.2
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 8.6e-25 119.4 176 47.7
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 1.1e-24 119.0 163 49.7
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 2.5e-24 117.9 133 51.9
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 2.1e-23 114.8 158 42.4
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 2.8e-23 114.4 162 45.7
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 2.8e-23 114.4 166 44.6
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 2.8e-23 114.4 165 45.5
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 3.6e-23 114.0 163 46.6
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 8.0e-23 112.8 560 27.3
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 1.4e-22 112.1 478 28.0
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 1.8e-22 111.7 159 44.0
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 3.1e-22 110.9 163 45.4
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 3.4e-21 107.5 142 47.2
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 5.8e-21 106.7 163 45.4
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 7.5e-21 106.3 163 45.4
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 9.8e-21 105.9 521 27.4
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 1.7e-20 105.1 159 44.7
Nn3g17525 Nelumbo nucifera HOM05D005042 ORTHO05D006080 2.9e-20 104.4 630 25.4
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 4.9e-20 103.6 160 43.8
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 6.4e-20 103.2 89 66.3
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 8.3e-20 102.8 133 48.9
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 1.4e-19 102.1 101 54.5
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 1.9e-19 101.7 142 47.9
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 2.4e-19 101.3 448 29.5
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 2.4e-19 101.3 74 71.6
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 3.2e-19 100.9 166 42.2
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 5.4e-19 100.1 162 45.7
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 4.6e-18 97.1 496 28.4
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 7.8e-18 96.3 577 25.8
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 3.9e-17 94.0 520 24.8
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.5e-16 92.0 87 58.6
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 3.3e-16 90.9 512 24.6
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 5.6e-16 90.1 159 40.3
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 5.6e-16 90.1 159 40.3
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 9.5e-16 89.4 85 57.6
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 1.6e-15 88.6 495 27.7
CBR_g19648 Chara braunii HOM05D005042 ORTHO05D006080 2.1e-15 88.2 103 49.5
TAR371G1032 Trochodendron aralioides HOM05D005042 ORTHO05D006080 2.6e-13 81.3 387 25.6
Manes.14G088800 Manihot esculenta HOM05D005042 ORTHO05D006080 1.1e-11 75.9 454 25.1
Sed0017498 Sechium edule HOM05D005042 ORTHO05D006080 9.2e-11 72.8 118 41.5
SMO361G0045 Selaginella moellendorffii HOM05D005042 ORTHO05D006080 2.8e-07 61.2 78 46.2
Dinv15584 Davidia involucrata HOM05D000485 ORTHO05D000341 4.0e-06 57.4 573 22.9


User provided reference genes

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