Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 1.1e-167 593.2 307 100.0
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 1.2e-164 583.2 307 98.4
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 2.4e-56 223.4 282 48.2
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 1.2e-55 221.1 305 50.8
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 5.9e-55 218.8 315 49.2
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 9.4e-53 211.5 243 52.7
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 2.1e-52 210.3 286 49.0
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 3.6e-52 209.5 225 58.2
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 1.4e-51 207.6 221 59.3
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 1.4e-51 207.6 309 48.5
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 3.0e-51 206.5 235 57.4
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 5.2e-51 205.7 324 44.8
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 6.7e-51 205.3 307 47.6
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 8.8e-51 204.9 323 45.5
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 1.1e-50 204.5 235 57.0
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 2.0e-50 203.8 252 53.6
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 4.4e-50 202.6 142 75.4
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 9.7e-50 201.4 309 47.2
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 1.3e-49 201.1 317 43.2
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 1.7e-49 200.7 305 46.6
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 2.2e-49 200.3 234 53.0
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 2.2e-49 200.3 312 43.9
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 2.8e-49 199.9 234 53.0
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 2.8e-49 199.9 307 47.6
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 2.8e-49 199.9 234 53.8
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 4.8e-49 199.1 296 48.0
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 4.8e-49 199.1 226 56.6
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 6.3e-49 198.7 253 50.2
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 6.3e-49 198.7 154 71.4
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 6.3e-49 198.7 234 53.0
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 8.2e-49 198.4 280 50.0
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 8.2e-49 198.4 234 52.6
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 1.4e-48 197.6 293 47.8
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 1.4e-48 197.6 242 51.7
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 1.4e-48 197.6 287 46.3
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 4.1e-48 196.1 290 48.6
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 5.3e-48 195.7 259 51.4
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 5.3e-48 195.7 310 44.5
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 7.0e-48 195.3 312 43.3
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 1.2e-47 194.5 241 53.5
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 1.6e-47 194.1 296 46.6
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 3.5e-47 193.0 311 43.4
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 3.5e-47 193.0 294 46.3
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 4.5e-47 192.6 312 43.9
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 5.9e-47 192.2 299 47.2
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 7.7e-47 191.8 297 46.1
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 7.7e-47 191.8 314 44.3
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 1.3e-46 191.0 306 46.4
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 1.7e-46 190.7 216 54.6
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 1.7e-46 190.7 290 45.2
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 2.2e-46 190.3 311 44.4
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 2.9e-46 189.9 311 43.4
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 8.5e-46 188.3 294 44.9
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 1.1e-45 188.0 225 52.9
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 1.5e-45 187.6 152 68.4
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 1.5e-45 187.6 296 47.0
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 1.5e-45 187.6 301 44.9
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 4.2e-45 186.0 265 50.6
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 4.2e-45 186.0 278 47.8
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 4.2e-45 186.0 278 47.8
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 4.2e-45 186.0 224 54.9
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 4.2e-45 186.0 208 55.8
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 5.5e-45 185.7 297 45.1
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 7.2e-45 185.3 292 45.5
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 7.2e-45 185.3 301 44.5
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 9.4e-45 184.9 285 46.3
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 1.2e-44 184.5 349 43.6
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 1.2e-44 184.5 222 53.2
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 1.2e-44 184.5 310 42.6
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 1.2e-44 184.5 283 46.3
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 1.6e-44 184.1 315 42.9
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 1.6e-44 184.1 160 65.0
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 1.6e-44 184.1 307 45.0
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 2.1e-44 183.7 270 49.3
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 2.1e-44 183.7 238 50.8
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 3.6e-44 183.0 297 44.1
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 4.7e-44 182.6 304 43.4
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 4.7e-44 182.6 291 45.0
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 8.0e-44 181.8 275 46.9
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 1.4e-43 181.0 323 41.5
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 1.8e-43 180.6 285 44.9
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 1.8e-43 180.6 170 60.6
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 5.2e-43 179.1 218 54.1
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 5.2e-43 179.1 231 52.8
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 2.0e-42 177.2 263 47.1
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 2.6e-42 176.8 320 40.0
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 2.6e-42 176.8 252 50.0
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 3.3e-42 176.4 291 44.0
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 3.3e-42 176.4 306 43.8
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 3.3e-42 176.4 303 44.6
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 4.4e-42 176.0 313 41.5
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 9.7e-42 174.9 291 43.6
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 9.7e-42 174.9 260 48.1
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 1.3e-41 174.5 291 43.6
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 2.2e-41 173.7 256 45.7
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 2.2e-41 173.7 312 42.9
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.4e-40 171.0 305 45.2
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.4e-40 171.0 311 43.4
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 1.6e-39 167.5 231 51.9
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 1.6e-39 167.5 298 43.3
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 1.6e-39 167.5 317 41.3
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 3.5e-39 166.4 304 42.4
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 7.7e-39 165.2 282 47.2
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 1.0e-38 164.9 230 50.4
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 1.3e-38 164.5 291 45.7
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 3.8e-38 162.9 340 42.1
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 6.5e-38 162.2 193 52.8
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 1.5e-37 161.0 295 42.0
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 2.5e-37 160.2 282 42.9
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 4.2e-37 159.5 234 50.0
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 9.4e-37 158.3 235 50.2
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 2.1e-36 157.1 143 63.6
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 2.7e-36 156.8 233 50.2
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 3.6e-36 156.4 233 49.4
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 6.1e-36 155.6 233 50.2
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 1.4e-35 154.5 274 46.4
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 1.8e-35 154.1 231 49.4
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 1.8e-35 154.1 280 45.4
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 1.8e-35 154.1 233 48.5
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 2.3e-35 153.7 233 49.4
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 2.3e-35 153.7 300 38.0
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 5.2e-35 152.5 274 44.5
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 5.2e-35 152.5 234 47.9
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 5.2e-35 152.5 274 44.5
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 5.2e-35 152.5 234 47.9
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 6.8e-35 152.1 275 45.5
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 6.8e-35 152.1 275 45.5
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 8.8e-35 151.8 234 49.1
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 2.0e-34 150.6 265 43.8
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 2.0e-34 150.6 302 39.7
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 4.4e-34 149.4 284 41.5
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 4.4e-34 149.4 273 44.0
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 9.8e-34 148.3 250 44.8
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 9.8e-34 148.3 290 41.0
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 2.2e-33 147.1 272 42.3
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 1.4e-32 144.4 182 50.0
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 1.8e-32 144.1 283 41.7
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 2.4e-32 143.7 191 50.8
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 1.2e-31 141.4 290 41.7
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 2.7e-31 140.2 283 42.0
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 1.0e-30 138.3 213 46.5
Oeu052991.1 Olea europaea HOM05D004418 ORTHO05D005222 8.5e-30 135.2 103 70.9
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 2.5e-29 133.7 270 40.7
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 4.7e-28 129.4 277 41.9
RcHm_v2.0_Chr4g0404491 Rosa chinensis HOM05D004418 ORTHO05D005222 3.0e-27 126.7 109 67.0
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 6.3e-25 119.0 167 46.1
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 1.1e-24 118.2 277 39.7
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 3.1e-24 116.7 277 39.7
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 3.1e-24 116.7 276 38.0
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 5.4e-24 115.9 276 38.0
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 7.0e-24 115.5 170 42.4
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 4.5e-23 112.8 165 46.1
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 4.5e-23 112.8 238 39.1
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 1.2e-20 104.8 245 35.5
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 2.0e-18 97.4 303 30.4
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 2.6e-18 97.1 143 44.1
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 1.7e-17 94.4 297 33.0
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 2.0e-15 87.4 131 42.0
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 2.7e-15 87.0 176 39.8
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 1.0e-14 85.1 191 36.6
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 2.8e-12 77.0 60 66.7
CAN.G144.13 Capsicum annuum HOM05D004418 ORTHO05D005222 4.0e-11 73.2 65 72.3


User provided reference genes

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