Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 2.3e-94 349.0 184 100.0
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 1.6e-92 342.8 184 98.4
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 7.6e-74 280.8 184 79.3
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 2.9e-73 278.9 185 79.5
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 8.3e-73 277.3 184 77.7
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 1.1e-72 276.9 184 76.6
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 1.1e-72 276.9 184 76.6
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 1.5e-69 266.5 190 74.2
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 5.6e-69 264.6 193 71.0
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 1.6e-68 263.1 161 82.0
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 2.1e-68 262.7 190 72.6
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 1.4e-67 260.0 187 71.1
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 4.0e-67 258.5 190 72.1
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 6.8e-67 257.7 177 74.0
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 8.9e-67 257.3 192 71.4
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 8.9e-67 257.3 190 71.6
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 1.5e-66 256.5 174 74.7
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 1.5e-66 256.5 190 71.6
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 2.0e-66 256.1 155 82.6
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 2.0e-66 256.1 189 70.4
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 4.4e-66 255.0 189 70.4
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 4.4e-66 255.0 189 71.4
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 5.8e-66 254.6 186 72.6
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 5.8e-66 254.6 189 69.8
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 9.9e-66 253.8 189 72.0
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 9.9e-66 253.8 189 70.9
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 1.3e-65 253.4 192 69.3
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 1.3e-65 253.4 161 78.3
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 2.2e-65 252.7 188 71.3
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 2.2e-65 252.7 190 70.0
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 2.9e-65 252.3 189 70.4
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 2.9e-65 252.3 189 70.4
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 3.8e-65 251.9 186 72.0
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 3.8e-65 251.9 186 72.0
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 3.8e-65 251.9 189 69.8
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 4.9e-65 251.5 159 78.0
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 4.9e-65 251.5 189 68.8
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.1e-64 250.4 182 70.9
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 1.1e-64 250.4 158 79.1
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 1.1e-64 250.4 156 79.5
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 1.1e-64 250.4 189 70.4
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 1.4e-64 250.0 183 71.0
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 2.4e-64 249.2 182 70.9
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 4.2e-64 248.4 182 70.9
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 4.2e-64 248.4 189 67.7
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 4.2e-64 248.4 169 72.8
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 5.4e-64 248.1 156 78.8
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 7.1e-64 247.7 156 78.8
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 9.3e-64 247.3 187 67.9
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 9.3e-64 247.3 189 67.2
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 1.2e-63 246.9 190 68.4
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 1.2e-63 246.9 189 68.8
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 1.6e-63 246.5 181 69.6
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 1.6e-63 246.5 183 70.5
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 2.1e-63 246.1 189 68.3
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 2.1e-63 246.1 157 76.4
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.5e-63 245.4 162 75.3
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 6.0e-63 244.6 182 69.8
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 6.0e-63 244.6 156 78.2
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 6.0e-63 244.6 156 78.2
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 7.8e-63 244.2 156 77.6
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 1.0e-62 243.8 157 76.4
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 1.0e-62 243.8 193 66.3
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 1.0e-62 243.8 193 66.3
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.3e-62 243.4 156 77.6
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 1.3e-62 243.4 156 76.9
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 1.7e-62 243.0 189 67.7
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 5.1e-62 241.5 189 66.1
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 5.1e-62 241.5 184 69.0
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 5.1e-62 241.5 193 66.8
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 6.6e-62 241.1 156 77.6
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 6.6e-62 241.1 188 66.0
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 6.6e-62 241.1 192 65.6
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 1.1e-61 240.4 188 66.0
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 1.1e-61 240.4 191 66.0
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 1.1e-61 240.4 156 76.3
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 1.1e-61 240.4 178 70.2
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 1.5e-61 240.0 158 74.7
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 1.9e-61 239.6 177 70.1
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 2.5e-61 239.2 180 67.2
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 3.3e-61 238.8 190 66.8
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 5.6e-61 238.0 151 80.1
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 7.3e-61 237.7 173 71.1
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 7.3e-61 237.7 190 66.3
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 9.6e-61 237.3 190 66.3
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 9.6e-61 237.3 176 69.3
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 1.3e-60 236.9 200 64.0
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 2.8e-60 235.7 185 65.4
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 3.6e-60 235.3 156 74.4
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 4.8e-60 235.0 187 65.8
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 8.1e-60 234.2 156 74.4
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 1.1e-59 233.8 186 66.1
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 1.4e-59 233.4 182 67.6
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 1.8e-59 233.0 159 72.3
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 3.1e-59 232.3 187 64.7
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 3.1e-59 232.3 199 59.3
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 4.0e-59 231.9 193 63.7
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 5.3e-59 231.5 169 70.4
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 2.0e-58 229.6 156 73.1
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 3.4e-58 228.8 181 67.4
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 4.4e-58 228.4 168 67.9
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 5.8e-58 228.0 185 64.3
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 5.8e-58 228.0 173 70.5
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 5.8e-58 228.0 187 63.1
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 2.9e-57 225.7 193 63.2
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 1.1e-56 223.8 185 63.8
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 1.4e-56 223.4 187 63.1
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 2.4e-56 222.6 177 64.4
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 3.2e-56 222.2 179 63.1
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 4.2e-56 221.9 193 62.2
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 7.1e-56 221.1 192 64.6
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 9.3e-56 220.7 208 59.1
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 9.3e-56 220.7 179 62.6
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 1.7e-54 216.5 195 60.5
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 3.9e-54 215.3 156 69.9
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 1.5e-53 213.4 178 65.2
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 3.3e-53 212.2 186 62.4
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 5.6e-53 211.5 157 65.6
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 1.8e-51 206.5 170 65.9
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 6.9e-51 204.5 253 48.6
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 1.7e-49 199.9 192 60.4
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 2.2e-49 199.5 168 64.3
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 2.9e-49 199.1 163 65.0
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 1.9e-48 196.4 187 59.4
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 5.4e-48 194.9 151 69.5
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 1.3e-46 190.3 135 67.4
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 1.8e-46 189.9 168 61.3
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 1.3e-44 183.7 106 84.9
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 1.6e-44 183.3 162 59.3
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 3.1e-43 179.1 156 57.1
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 1.0e-41 174.1 199 52.3
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 1.3e-41 173.7 108 75.9
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 2.9e-41 172.6 158 56.3
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 1.4e-40 170.2 193 51.3
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 3.2e-40 169.1 193 50.8
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 3.2e-40 169.1 132 65.9
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 3.0e-38 162.5 181 51.9
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 3.0e-38 162.5 110 70.9
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 6.7e-38 161.4 146 53.4
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 2.5e-37 159.5 136 64.0
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 5.7e-37 158.3 143 58.0
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 4.1e-35 152.1 159 52.2
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.5e-34 150.2 129 60.5
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 5.8e-34 148.3 144 50.0
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 7.6e-34 147.9 93 75.3
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 7.6e-34 147.9 154 59.1
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.7e-33 146.7 132 62.9
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.7e-33 146.7 130 60.8
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 1.4e-32 143.7 171 43.9
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.4e-32 143.7 130 60.8
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.2e-32 142.5 132 62.9
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 5.5e-32 141.7 82 81.7
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 4.6e-31 138.7 125 56.0
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.4e-19 100.5 125 48.0
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 2.0e-18 96.7 181 40.3
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 1.4e-14 84.0 86 55.8
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 2.6e-13 79.7 57 64.9
TAR374G0495 Trochodendron aralioides HOM05D004525 ORTHO05D005295 2.8e-12 76.3 105 50.5
BcaB05g21931 Brassica carinata HOM05D004525 ORTHO05D005295 4.7e-07 58.9 79 50.6
SGA_v2.0_scaffold104G30259 Striga asiatica HOM05D004525 ORTHO05D005295 4.7e-07 58.9 178 33.7


User provided reference genes

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